Wall clock time and date at job start Wed Apr 1 2020 02:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38260 * 119.99915 * 2 1 4 4 C 1.38216 * 119.99760 * 179.97438 * 3 2 1 5 5 C 1.38255 * 119.99811 * 359.75105 * 4 3 2 6 6 C 1.38211 * 120.00242 * 0.50064 * 5 4 3 7 7 C 1.50705 * 120.00228 * 179.76567 * 6 5 4 8 8 C 1.50699 * 109.47416 * 269.73336 * 7 6 5 9 9 O 1.21284 * 119.99717 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00130 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99871 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.26242 * 34.50967 * 11 10 8 13 13 C 1.51191 * 109.26778 * 274.99986 * 11 10 8 14 14 C 1.49313 * 116.94526 * 272.62745 * 13 11 10 15 15 C 1.49186 * 121.13960 * 359.73992 * 14 13 11 16 16 H 1.09005 * 108.41677 * 122.31854 * 15 14 13 17 17 C 1.54195 * 111.21666 * 240.33667 * 15 14 13 18 18 N 1.46898 * 106.35170 * 154.10144 * 17 15 14 19 19 C 1.36935 * 125.36396 * 162.42603 * 18 17 15 20 20 H 1.07999 * 119.99714 * 189.02677 * 19 18 17 21 21 C 1.38814 * 119.99941 * 9.02844 * 19 18 17 22 22 N 1.31612 * 120.00227 * 8.71121 * 21 19 18 23 23 Si 1.86804 * 119.99655 * 188.70976 * 21 19 18 24 24 H 1.48500 * 109.47043 * 94.42661 * 23 21 19 25 25 H 1.48502 * 109.47180 * 214.42535 * 23 21 19 26 26 H 1.48497 * 109.47241 * 334.42355 * 23 21 19 27 27 C 1.46796 * 109.26561 * 342.15766 * 18 17 15 28 28 C 1.52591 * 116.85541 * 359.63332 * 15 14 13 29 29 H 1.09001 * 110.46766 * 91.64104 * 28 15 14 30 30 C 1.52796 * 110.38436 * 328.35740 * 28 15 14 31 31 C 1.38212 * 120.00070 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.46937 * 270.02128 * 1 2 3 33 33 H 1.09002 * 109.47024 * 30.02356 * 1 2 3 34 34 H 1.09001 * 109.47278 * 150.02188 * 1 2 3 35 35 H 1.08000 * 120.00299 * 359.97438 * 3 2 1 36 36 H 1.08000 * 120.00124 * 180.02562 * 4 3 2 37 37 H 1.08010 * 119.99647 * 180.27500 * 5 4 3 38 38 H 1.08993 * 109.46864 * 149.72929 * 7 6 5 39 39 H 1.09003 * 109.46378 * 29.73211 * 7 6 5 40 40 H 0.97001 * 119.99949 * 359.97438 * 10 8 7 41 41 H 1.09004 * 107.95279 * 150.74177 * 13 11 10 42 42 H 1.09002 * 107.92964 * 34.49457 * 13 11 10 43 43 H 1.09002 * 107.07775 * 236.74069 * 14 13 11 44 44 H 1.09004 * 107.07810 * 122.74040 * 14 13 11 45 45 H 1.09000 * 110.07663 * 34.88256 * 17 15 14 46 46 H 1.08997 * 110.07837 * 273.32229 * 17 15 14 47 47 H 0.96998 * 120.00125 * 180.02562 * 22 21 19 48 48 H 1.09004 * 109.82745 * 120.55364 * 27 18 17 49 49 H 1.08999 * 109.83070 * 241.53186 * 27 18 17 50 50 H 1.09009 * 109.83995 * 183.67548 * 30 28 15 51 51 H 1.09000 * 109.84360 * 304.64857 * 30 28 15 52 52 H 1.07995 * 119.99649 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 0.0000 0.0063 6 6 3.5806 -1.1970 0.0010 7 6 4.3341 -2.5021 0.0019 8 6 4.5858 -2.9379 -1.4185 9 8 4.1925 -2.2556 -2.3409 10 7 5.2488 -4.0853 -1.6640 11 6 5.4930 -4.5092 -3.0449 12 1 5.6576 -3.6297 -3.6673 13 6 4.2865 -5.2635 -3.5560 14 6 4.2435 -6.7319 -3.2887 15 6 5.3483 -7.4152 -2.5551 16 1 4.9272 -7.9054 -1.6772 17 6 6.0052 -8.5055 -3.4253 18 7 7.3793 -8.6586 -2.9290 19 6 8.1966 -9.7291 -3.1761 20 1 9.1363 -9.8234 -2.6522 21 6 7.8173 -10.6932 -4.1001 22 7 6.7621 -10.4959 -4.8615 23 14 8.8047 -12.2706 -4.2627 24 1 8.1908 -13.3279 -3.4198 25 1 8.8080 -12.7085 -5.6817 26 1 10.2002 -12.0294 -3.8159 27 6 7.7405 -7.4800 -2.1319 28 6 6.5178 -6.5451 -2.1041 29 1 6.3471 -6.1705 -1.0948 30 6 6.7370 -5.3965 -3.0877 31 6 2.1981 -1.1969 0.0005 32 1 -0.3633 0.0004 1.0277 33 1 -0.3633 0.8898 -0.5142 34 1 -0.3634 -0.8902 -0.5135 35 1 1.6583 2.1327 -0.0004 36 1 4.1205 2.1326 0.0010 37 1 5.3517 0.0000 0.0112 38 1 3.7448 -3.2614 0.5159 39 1 5.2863 -2.3714 0.5161 40 1 5.5644 -4.6305 -0.9263 41 1 4.2306 -5.1166 -4.6346 42 1 3.3977 -4.8150 -3.1124 43 1 4.1433 -7.2300 -4.2530 44 1 3.3234 -6.9303 -2.7389 45 1 6.0171 -8.1939 -4.4698 46 1 5.4628 -9.4451 -3.3207 47 1 6.4968 -11.1697 -5.5068 48 1 7.9965 -7.7844 -1.1170 49 1 8.5867 -6.9685 -2.5905 50 1 7.6135 -4.8193 -2.7931 51 1 6.8747 -5.7923 -4.0939 52 1 1.6580 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980161223.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:25 Heat of formation + Delta-G solvation = -1.363282 kcal Electronic energy + Delta-G solvation = -29829.082476 eV Core-core repulsion = 25986.058542 eV Total energy + Delta-G solvation = -3843.023934 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -40.49564 -39.59680 -38.49511 -35.66392 -33.70541 -33.32367 -32.25411 -32.10139 -30.69638 -29.33892 -27.94136 -27.02378 -26.31965 -24.98151 -22.72227 -22.32231 -21.70693 -20.88133 -20.47781 -19.97543 -17.67151 -17.19818 -16.79673 -16.65625 -16.02222 -15.71816 -15.65741 -15.11061 -14.75499 -14.42709 -14.22630 -14.03798 -13.83206 -13.59886 -13.35705 -13.18628 -13.16354 -12.68057 -12.62540 -12.39018 -12.17669 -12.08496 -12.04817 -11.87291 -11.44076 -11.30735 -11.26156 -11.16990 -11.07955 -10.88397 -10.74898 -10.42167 -9.99732 -9.96217 -9.84737 -9.79692 -9.46975 -9.33436 -8.94865 -8.91292 -8.75390 -8.56307 -6.78130 -5.73988 -3.06494 1.15702 1.23818 2.65580 3.18236 3.39222 3.44687 3.46657 3.67276 4.41240 4.49839 4.56653 4.69491 4.79805 4.91773 4.96082 5.01645 5.04120 5.06154 5.09445 5.27303 5.30348 5.34590 5.35493 5.40164 5.46799 5.48434 5.53083 5.58506 5.71634 5.81341 5.88003 5.88114 5.93966 5.95821 6.04808 6.24137 6.28175 6.32510 6.37736 6.39883 6.42999 6.43974 6.57519 6.65880 6.72173 6.77660 6.84157 6.89357 6.98110 7.53862 7.55797 7.64109 7.81041 8.26376 8.27825 9.21964 9.83484 10.49902 11.38618 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.031452 B = 0.001996 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.029177 B =14027.155157 C =14393.003511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.087 4.087 3 C -0.124 4.124 4 C -0.116 4.116 5 C -0.112 4.112 6 C -0.058 4.058 7 C -0.106 4.106 8 C 0.512 3.488 9 O -0.536 6.536 10 N -0.722 5.722 11 C 0.152 3.848 12 H 0.084 0.916 13 C -0.115 4.115 14 C -0.099 4.099 15 C -0.104 4.104 16 H 0.055 0.945 17 C 0.185 3.815 18 N -0.603 5.603 19 C -0.229 4.229 20 H 0.076 0.924 21 C -0.008 4.008 22 N -0.918 5.918 23 Si 0.910 3.090 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.140 3.860 28 C -0.086 4.086 29 H 0.062 0.938 30 C -0.113 4.113 31 C -0.105 4.105 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.400 0.600 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.044 0.956 45 H 0.032 0.968 46 H 0.054 0.946 47 H 0.252 0.748 48 H 0.019 0.981 49 H 0.023 0.977 50 H 0.065 0.935 51 H 0.086 0.914 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.179 20.811 11.694 25.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.087 4.087 3 C -0.142 4.142 4 C -0.134 4.134 5 C -0.130 4.130 6 C -0.058 4.058 7 C -0.146 4.146 8 C 0.298 3.702 9 O -0.413 6.413 10 N -0.376 5.376 11 C 0.049 3.951 12 H 0.102 0.898 13 C -0.154 4.154 14 C -0.137 4.137 15 C -0.124 4.124 16 H 0.074 0.926 17 C 0.060 3.940 18 N -0.329 5.329 19 C -0.358 4.358 20 H 0.094 0.906 21 C -0.204 4.204 22 N -0.565 5.565 23 Si 0.741 3.259 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.206 1.206 27 C 0.014 3.986 28 C -0.105 4.105 29 H 0.081 0.919 30 C -0.151 4.151 31 C -0.123 4.123 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.236 0.764 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.063 0.937 45 H 0.050 0.950 46 H 0.073 0.927 47 H 0.062 0.938 48 H 0.037 0.963 49 H 0.041 0.959 50 H 0.084 0.916 51 H 0.105 0.895 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.475 21.096 10.867 25.551 hybrid contribution 0.649 -1.259 0.169 1.426 sum -8.826 19.837 11.036 24.355 Atomic orbital electron populations 1.20787 0.91274 1.02844 1.02160 1.19865 0.96005 0.93116 0.99719 1.20999 0.94296 0.97380 1.01492 1.21063 0.94291 0.97840 1.00187 1.20957 0.99662 0.92010 1.00329 1.19254 0.93484 0.93638 0.99441 1.20714 1.02268 0.96264 0.95325 1.20461 0.77910 0.80820 0.90997 1.90721 1.50406 1.54007 1.46118 1.46379 1.58017 1.23651 1.09526 1.20583 0.95211 0.97221 0.82132 0.89803 1.20763 0.97961 0.95389 1.01299 1.19825 0.97968 0.94499 1.01446 1.21049 0.94384 0.97357 0.99609 0.92629 1.21332 0.84347 0.94376 0.93966 1.44274 1.11746 1.17472 1.59379 1.19028 1.00876 0.97934 1.17956 0.90650 1.24823 0.98578 0.99479 0.97553 1.69965 1.27411 1.34377 1.24750 0.86128 0.79265 0.83584 0.76950 1.21674 1.21780 1.20619 1.21274 0.94276 0.88255 0.94800 1.21442 0.96580 0.95266 0.97174 0.91946 1.21778 0.95626 0.95795 1.01860 1.20852 0.93394 0.97621 1.00472 0.91270 0.91612 0.91509 0.86335 0.86160 0.86311 0.87982 0.87973 0.76421 0.91834 0.92436 0.91927 0.93679 0.94992 0.92727 0.93761 0.96294 0.95875 0.91603 0.89505 0.86309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.01 36.01 0.36 -0.45 16 2 C -0.09 -0.84 5.88 -104.62 -0.62 -1.45 16 3 C -0.12 -1.14 9.70 -39.58 -0.38 -1.52 16 4 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 5 C -0.11 -1.12 9.70 -39.59 -0.38 -1.51 16 6 C -0.06 -0.60 4.37 -104.62 -0.46 -1.06 16 7 C -0.11 -0.93 5.83 -29.03 -0.17 -1.10 16 8 C 0.51 6.21 7.57 -10.99 -0.08 6.12 16 9 O -0.54 -8.67 15.68 5.55 0.09 -8.58 16 10 N -0.72 -8.18 4.90 -54.77 -0.27 -8.45 16 11 C 0.15 2.03 2.77 -68.91 -0.19 1.84 16 12 H 0.08 1.20 7.55 -51.93 -0.39 0.80 16 13 C -0.12 -1.62 5.46 -29.46 -0.16 -1.78 16 14 C -0.10 -1.54 5.40 -30.42 -0.16 -1.70 16 15 C -0.10 -1.84 2.85 -92.08 -0.26 -2.10 16 16 H 0.06 0.98 8.13 -51.93 -0.42 0.56 16 17 C 0.18 4.33 4.64 -3.20 -0.01 4.32 16 18 N -0.60 -15.08 3.39 -171.37 -0.58 -15.66 16 19 C -0.23 -6.35 10.22 -15.06 -0.15 -6.50 16 20 H 0.08 2.03 7.84 -52.49 -0.41 1.61 16 21 C -0.01 -0.22 5.42 -17.43 -0.09 -0.31 16 22 N -0.92 -26.79 10.57 55.49 0.59 -26.20 16 23 Si 0.91 22.01 29.56 -169.99 -5.03 16.99 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 C 0.14 2.79 6.85 -3.39 -0.02 2.76 16 28 C -0.09 -1.34 2.72 -90.45 -0.25 -1.58 16 29 H 0.06 0.81 6.16 -51.93 -0.32 0.49 16 30 C -0.11 -1.61 4.71 -26.91 -0.13 -1.74 16 31 C -0.11 -1.09 9.36 -39.59 -0.37 -1.46 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 34 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 35 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 36 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 38 H 0.10 0.71 8.08 -51.93 -0.42 0.29 16 39 H 0.10 0.68 8.08 -51.93 -0.42 0.26 16 40 H 0.40 3.81 6.44 -40.82 -0.26 3.55 16 41 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 42 H 0.06 0.82 7.76 -51.93 -0.40 0.41 16 43 H 0.06 1.06 7.20 -51.93 -0.37 0.68 16 44 H 0.04 0.65 8.09 -51.93 -0.42 0.23 16 45 H 0.03 0.83 7.36 -51.93 -0.38 0.45 16 46 H 0.05 1.45 7.20 -51.93 -0.37 1.08 16 47 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 48 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.02 0.47 7.71 -51.93 -0.40 0.07 16 50 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 51 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 52 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 403.95 15.07 6.09 6.09 Total: -1.00 -32.89 403.95 -11.83 -44.72 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -8.78 Total: 1.81 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -3.94 Total: -10.72 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: -0.26 Total: -50.31 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.09 Total: -8.58 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.89 -11.83 -44.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980161223.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.362 kcal (2) G-P(sol) polarization free energy of solvation -32.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds