Wall clock time and date at job start Wed Apr 1 2020 02:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 115.55005 * 2 1 4 4 C 1.53000 * 117.49731 * 145.67530 * 2 1 3 5 5 H 1.09002 * 117.50250 * 359.97281 * 4 2 1 6 6 C 1.50701 * 117.49692 * 214.97995 * 4 2 1 7 7 O 1.21285 * 119.99874 * 291.09957 * 6 4 2 8 8 N 1.34774 * 120.00312 * 111.10301 * 6 4 2 9 9 C 1.47974 * 119.99971 * 174.69210 * 8 6 4 10 10 C 1.47141 * 110.43089 * 102.40693 * 9 8 6 11 11 C 1.53799 * 111.77717 * 58.34109 * 10 9 8 12 12 N 1.43467 * 107.95775 * 281.71270 * 11 10 9 13 13 C 1.36933 * 118.94289 * 273.62751 * 12 11 10 14 14 H 1.08000 * 120.00248 * 141.70124 * 13 12 11 15 15 C 1.38814 * 119.99812 * 321.69917 * 13 12 11 16 16 N 1.31618 * 120.00188 * 154.53406 * 15 13 12 17 17 Si 1.86798 * 120.00127 * 334.53152 * 15 13 12 18 18 H 1.48498 * 109.47264 * 95.17903 * 17 15 13 19 19 H 1.48501 * 109.47295 * 215.17913 * 17 15 13 20 20 H 1.48499 * 109.47168 * 335.17594 * 17 15 13 21 21 C 1.48860 * 122.11546 * 93.61088 * 12 11 10 22 22 C 1.43619 * 119.97100 * 354.66920 * 8 6 4 23 23 C 1.52995 * 60.00190 * 107.48670 * 4 2 1 24 24 H 1.09001 * 117.50125 * 107.48716 * 23 4 2 25 25 C 1.50696 * 117.49980 * 252.50835 * 23 4 2 26 26 C 1.38241 * 120.00218 * 8.33450 * 25 23 4 27 27 C 1.38232 * 120.00017 * 179.74559 * 26 25 23 28 28 C 1.38226 * 120.00228 * 0.54910 * 27 26 25 29 29 C 1.38235 * 120.00104 * 359.70528 * 28 27 26 30 30 C 1.38238 * 120.00037 * 0.02562 * 29 28 27 31 31 H 1.08997 * 109.47294 * 325.72112 * 1 2 3 32 32 H 1.09003 * 109.47173 * 85.71854 * 1 2 3 33 33 H 1.09004 * 109.47258 * 205.71784 * 1 2 3 34 34 H 1.08996 * 109.47159 * 199.15529 * 3 2 1 35 35 H 1.08999 * 109.47236 * 319.16208 * 3 2 1 36 36 H 1.09000 * 109.47056 * 79.16116 * 3 2 1 37 37 H 1.09004 * 109.22068 * 342.15982 * 9 8 6 38 38 H 1.09002 * 109.35325 * 222.74262 * 9 8 6 39 39 H 1.09000 * 109.00955 * 297.77490 * 10 9 8 40 40 H 1.08998 * 109.00854 * 178.90727 * 10 9 8 41 41 H 1.08991 * 109.76344 * 41.32715 * 11 10 9 42 42 H 1.09002 * 109.76213 * 162.04965 * 11 10 9 43 43 H 0.96998 * 120.00666 * 179.97438 * 16 15 13 44 44 H 1.09004 * 109.48251 * 80.62410 * 21 12 11 45 45 H 1.09006 * 109.47562 * 200.63953 * 21 12 11 46 46 H 1.08997 * 108.88009 * 149.90649 * 22 8 6 47 47 H 1.08998 * 108.79852 * 31.40955 * 22 8 6 48 48 H 1.08003 * 119.99466 * 359.97438 * 26 25 23 49 49 H 1.08001 * 119.99666 * 180.27612 * 27 26 25 50 50 H 1.08003 * 120.00334 * 179.72405 * 28 27 26 51 51 H 1.07999 * 120.00361 * 179.97438 * 29 28 27 52 52 H 1.07993 * 120.00109 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.2365 -1.1208 0.7653 5 1 1.6112 -1.8580 1.2691 6 6 3.5293 -0.7807 1.4610 7 8 4.5198 -0.5258 0.8093 8 7 3.5848 -0.7600 2.8075 9 6 4.8788 -0.5422 3.4913 10 6 4.9749 0.8424 3.9799 11 6 3.8300 1.1868 4.9475 12 7 2.6540 1.4446 4.1673 13 6 2.4452 2.7075 3.6809 14 1 2.0271 2.8441 2.6946 15 6 2.7709 3.8123 4.4557 16 7 3.0560 4.9602 3.8783 17 14 2.8045 3.6700 6.3180 18 1 4.1922 3.3935 6.7684 19 1 2.3329 4.9428 6.9203 20 1 1.9149 2.5606 6.7458 21 6 1.6536 0.3834 3.8693 22 6 2.3875 -0.9489 3.5779 23 6 2.2364 -1.1213 -0.7647 24 1 3.1715 -0.8756 -1.2681 25 6 1.3720 -2.1410 -1.4602 26 6 0.4895 -2.9135 -0.7285 27 6 -0.3072 -3.8452 -1.3672 28 6 -0.2133 -4.0126 -2.7361 29 6 0.6730 -3.2439 -3.4672 30 6 1.4657 -2.3082 -2.8293 31 1 -0.3634 0.8491 0.5788 32 1 -0.3634 0.0767 -1.0248 33 1 -0.3634 -0.9259 0.4460 34 1 3.2224 1.2895 -0.3372 35 1 1.6452 2.0435 -0.6720 36 1 2.1723 1.7915 1.0093 37 1 5.6916 -0.7347 2.7910 38 1 4.9621 -1.2286 4.3340 39 1 4.9372 1.5226 3.1290 40 1 5.9264 0.9717 4.4956 41 1 3.6501 0.3474 5.6191 42 1 4.0908 2.0727 5.5265 43 1 3.2833 5.7323 4.4196 44 1 0.9935 0.2548 4.7271 45 1 1.0654 0.6726 2.9983 46 1 2.6483 -1.4221 4.5246 47 1 1.7162 -1.6082 3.0278 48 1 0.4198 -2.7863 0.3418 49 1 -0.9999 -4.4455 -0.7960 50 1 -0.8326 -4.7437 -3.2345 51 1 0.7467 -3.3749 -4.5367 52 1 2.1584 -1.7080 -3.4004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981164563.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:12 Heat of formation + Delta-G solvation = 49.374307 kcal Electronic energy + Delta-G solvation = -31851.353332 eV Core-core repulsion = 28010.529546 eV Total energy + Delta-G solvation = -3840.823787 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 5.49 seconds Orbital eigenvalues (eV) -40.69355 -39.31022 -37.71021 -36.58131 -34.39798 -32.51899 -31.52187 -31.32560 -31.00671 -28.97990 -27.77588 -27.15702 -25.94086 -24.43575 -23.66805 -22.69249 -22.28018 -20.65014 -20.07303 -19.22955 -17.97808 -17.39682 -16.65783 -16.34308 -15.93318 -15.41111 -15.18003 -15.00667 -14.84530 -14.32724 -14.06602 -13.83831 -13.55263 -13.46241 -13.28615 -13.04307 -12.95917 -12.76046 -12.53733 -12.45027 -12.20091 -12.12616 -12.00555 -11.81951 -11.60159 -11.31676 -11.26804 -11.06748 -10.90822 -10.80550 -10.62376 -10.43579 -10.25327 -10.08302 -9.82434 -9.70826 -9.53835 -9.28501 -9.01226 -8.52499 -8.47808 -8.15505 -6.77644 -6.00373 -3.38280 1.22213 1.30022 2.85913 3.30414 3.31863 3.45912 3.50276 3.61619 4.15669 4.48155 4.52591 4.70975 4.80457 4.82681 4.87402 4.95660 4.98397 5.09410 5.17288 5.26126 5.29982 5.41061 5.43560 5.48095 5.52727 5.60486 5.69637 5.81378 5.83908 5.88916 5.89814 5.92394 5.94613 6.08283 6.12616 6.16278 6.18768 6.32613 6.35082 6.37185 6.40252 6.43943 6.47043 6.56458 6.59114 6.60109 6.78382 6.83727 6.89853 7.00685 7.23308 7.87510 8.09729 8.38559 8.62759 9.04634 9.73027 10.11036 11.15083 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018150 B = 0.003349 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.329143 B = 8358.526320 C = 8702.463095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.066 4.066 3 C -0.127 4.127 4 C -0.175 4.175 5 H 0.121 0.879 6 C 0.554 3.446 7 O -0.547 6.547 8 N -0.583 5.583 9 C 0.131 3.869 10 C -0.165 4.165 11 C 0.153 3.847 12 N -0.599 5.599 13 C -0.268 4.268 14 H 0.077 0.923 15 C 0.039 3.961 16 N -0.894 5.894 17 Si 0.873 3.127 18 H -0.287 1.287 19 H -0.303 1.303 20 H -0.272 1.272 21 C 0.126 3.874 22 C 0.094 3.906 23 C -0.091 4.091 24 H 0.123 0.877 25 C -0.038 4.038 26 C -0.119 4.119 27 C -0.118 4.118 28 C -0.130 4.130 29 C -0.118 4.118 30 C -0.113 4.113 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.055 0.945 41 H 0.034 0.966 42 H 0.051 0.949 43 H 0.262 0.738 44 H 0.031 0.969 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.069 0.931 48 H 0.122 0.878 49 H 0.120 0.880 50 H 0.118 0.882 51 H 0.120 0.880 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.632 -17.510 -7.989 20.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.066 4.066 3 C -0.184 4.184 4 C -0.196 4.196 5 H 0.138 0.862 6 C 0.342 3.658 7 O -0.426 6.426 8 N -0.314 5.314 9 C 0.010 3.990 10 C -0.206 4.206 11 C 0.026 3.974 12 N -0.322 5.322 13 C -0.396 4.396 14 H 0.094 0.906 15 C -0.162 4.162 16 N -0.535 5.535 17 Si 0.703 3.297 18 H -0.215 1.215 19 H -0.231 1.231 20 H -0.197 1.197 21 C 0.000 4.000 22 C -0.032 4.032 23 C -0.109 4.109 24 H 0.141 0.859 25 C -0.038 4.038 26 C -0.137 4.137 27 C -0.136 4.136 28 C -0.148 4.148 29 C -0.137 4.137 30 C -0.131 4.131 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.052 0.948 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.049 0.951 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.088 0.912 48 H 0.140 0.860 49 H 0.138 0.862 50 H 0.136 0.864 51 H 0.138 0.862 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.072 -17.216 -8.290 19.770 hybrid contribution 0.029 0.047 1.321 1.322 sum -5.042 -17.169 -6.968 19.203 Atomic orbital electron populations 1.21429 0.91550 1.02335 1.02075 1.21632 0.94667 0.91187 0.99162 1.21533 1.00058 0.92543 1.04290 1.22620 0.98528 1.04445 0.94029 0.86168 1.19371 0.88465 0.76127 0.81852 1.90635 1.37193 1.49670 1.65070 1.47181 1.08503 1.70572 1.05097 1.20542 0.85076 0.97368 0.96025 1.21710 0.99517 0.96881 1.02450 1.20652 0.86631 0.97941 0.92192 1.43833 1.19183 1.07251 1.61965 1.18740 1.41861 0.80584 0.98432 0.90571 1.25453 0.98345 0.95079 0.97337 1.69916 1.46221 1.02082 1.35263 0.87020 0.77428 0.76487 0.88776 1.21508 1.23068 1.19663 1.22166 0.91307 0.87675 0.98827 1.21808 0.87058 0.98662 0.95662 1.21369 1.00359 0.98021 0.91169 0.85884 1.19149 0.95801 0.95403 0.93412 1.21092 0.96414 0.96240 0.99951 1.21099 0.99334 0.98410 0.94759 1.21102 0.99338 1.00041 0.94343 1.21107 0.96487 0.96315 0.99742 1.20980 0.99725 0.98526 0.93863 0.91304 0.92003 0.92321 0.91823 0.92260 0.89623 0.90429 0.92271 0.90130 0.92667 0.94804 0.93087 0.92803 0.95106 0.91991 0.91641 0.91248 0.86022 0.86223 0.86404 0.86217 0.85987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.41 8.62 37.16 0.32 -1.09 16 2 C -0.07 -0.93 2.70 -154.51 -0.42 -1.35 16 3 C -0.13 -2.17 8.86 37.16 0.33 -1.84 16 4 C -0.18 -2.49 4.18 -91.77 -0.38 -2.87 16 5 H 0.12 1.45 4.48 -51.93 -0.23 1.22 16 6 C 0.55 9.69 6.51 -10.99 -0.07 9.62 16 7 O -0.55 -11.33 14.96 5.55 0.08 -11.25 16 8 N -0.58 -9.67 2.45 -176.86 -0.43 -10.10 16 9 C 0.13 2.18 5.65 -6.05 -0.03 2.14 16 10 C -0.16 -3.18 5.64 -29.13 -0.16 -3.34 16 11 C 0.15 3.18 4.59 -5.23 -0.02 3.16 16 12 N -0.60 -13.26 2.10 -171.99 -0.36 -13.62 16 13 C -0.27 -7.09 9.52 -15.06 -0.14 -7.23 16 14 H 0.08 2.18 6.52 -52.49 -0.34 1.84 16 15 C 0.04 1.08 5.22 -17.43 -0.09 0.99 16 16 N -0.89 -26.72 13.97 55.49 0.78 -25.95 16 17 Si 0.87 21.69 25.31 -169.99 -4.30 17.39 16 18 H -0.29 -6.99 6.65 56.52 0.38 -6.62 16 19 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 C 0.13 2.25 6.85 -1.75 -0.01 2.24 16 22 C 0.09 1.36 5.15 -4.58 -0.02 1.34 16 23 C -0.09 -1.24 5.20 -91.77 -0.48 -1.71 16 24 H 0.12 1.87 7.62 -51.93 -0.40 1.48 16 25 C -0.04 -0.45 5.04 -104.62 -0.53 -0.97 16 26 C -0.12 -1.27 7.78 -39.58 -0.31 -1.58 16 27 C -0.12 -1.11 10.05 -39.59 -0.40 -1.51 16 28 C -0.13 -1.18 10.05 -39.59 -0.40 -1.58 16 29 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 30 C -0.11 -1.24 9.74 -39.58 -0.39 -1.62 16 31 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.62 5.94 -51.93 -0.31 0.31 16 34 H 0.06 1.18 7.14 -51.93 -0.37 0.81 16 35 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 36 H 0.09 1.75 6.60 -51.93 -0.34 1.41 16 37 H 0.08 1.33 7.18 -51.93 -0.37 0.96 16 38 H 0.06 0.83 8.05 -51.93 -0.42 0.41 16 39 H 0.08 1.89 7.91 -51.93 -0.41 1.48 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.03 0.62 7.59 -51.93 -0.39 0.23 16 42 H 0.05 1.19 3.32 -51.93 -0.17 1.02 16 43 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 1.12 7.97 -51.93 -0.41 0.71 16 46 H 0.07 0.86 7.73 -51.93 -0.40 0.46 16 47 H 0.07 0.82 5.89 -51.93 -0.31 0.52 16 48 H 0.12 1.19 5.19 -52.48 -0.27 0.92 16 49 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 50 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 51 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 52 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 391.37 15.07 5.90 5.90 Total: -1.00 -31.55 391.37 -10.06 -41.62 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -8.12 Total: 4.74 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -3.61 Total: -8.73 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: -0.02 Total: -49.67 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.08 Total: -11.25 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.30 Total: 17.39 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.55 -10.06 -41.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981164563.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.990 kcal (2) G-P(sol) polarization free energy of solvation -31.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.49 seconds