Wall clock time and date at job start Wed Apr 1 2020 01:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38237 * 119.99999 * 2 1 4 4 C 1.38234 * 119.99805 * 180.28774 * 3 2 1 5 5 C 1.38242 * 120.00138 * 359.70870 * 4 3 2 6 6 C 1.38228 * 119.99916 * 0.02562 * 5 4 3 7 7 C 1.50700 * 120.00081 * 179.97438 * 6 5 4 8 8 C 1.38233 * 120.00000 * 179.73959 * 2 1 3 9 9 C 1.50703 * 119.99955 * 0.02562 * 8 2 1 10 10 C 1.50700 * 109.47083 * 269.72402 * 9 8 2 11 11 O 1.21280 * 119.99970 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00133 * 179.97438 * 10 9 8 13 13 C 1.47665 * 134.45773 * 179.97438 * 12 10 9 14 14 C 1.53457 * 85.97514 * 155.73782 * 13 12 10 15 15 C 1.47677 * 134.45185 * 0.03951 * 12 10 9 16 16 C 1.52632 * 113.69795 * 268.84492 * 14 13 12 17 17 C 1.53190 * 109.36237 * 171.34473 * 16 14 13 18 18 C 1.53145 * 109.35560 * 59.05452 * 17 16 14 19 19 N 1.46893 * 109.07697 * 303.52224 * 18 17 16 20 20 C 1.36941 * 120.69048 * 235.34839 * 19 18 17 21 21 H 1.08005 * 119.99657 * 26.92598 * 20 19 18 22 22 C 1.38804 * 120.00292 * 206.93267 * 20 19 18 23 23 N 1.31621 * 119.99909 * 17.09860 * 22 20 19 24 24 Si 1.86798 * 120.00220 * 197.09789 * 22 20 19 25 25 H 1.48499 * 109.47014 * 89.99845 * 24 22 20 26 26 H 1.48505 * 109.47278 * 209.99663 * 24 22 20 27 27 H 1.48498 * 109.47229 * 329.99832 * 24 22 20 28 28 C 1.47111 * 118.62398 * 55.36405 * 19 18 17 29 29 H 1.09002 * 109.47235 * 270.26105 * 1 2 3 30 30 H 1.09004 * 109.46778 * 30.26128 * 1 2 3 31 31 H 1.08998 * 109.47055 * 150.25850 * 1 2 3 32 32 H 1.07996 * 120.00100 * 0.02562 * 3 2 1 33 33 H 1.08002 * 119.99990 * 179.71924 * 4 3 2 34 34 H 1.07995 * 119.99755 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.47449 * 270.02215 * 7 6 5 36 36 H 1.09000 * 109.46856 * 30.02614 * 7 6 5 37 37 H 1.09002 * 109.46934 * 150.01813 * 7 6 5 38 38 H 1.09006 * 109.46742 * 149.73104 * 9 8 2 39 39 H 1.08993 * 109.47260 * 29.72578 * 9 8 2 40 40 H 1.08996 * 113.79167 * 41.47636 * 13 12 10 41 41 H 1.08997 * 113.79357 * 270.00139 * 13 12 10 42 42 H 1.09000 * 113.79605 * 89.99605 * 15 12 10 43 43 H 1.09006 * 113.78807 * 318.52618 * 15 12 10 44 44 H 1.08996 * 109.49119 * 51.37937 * 16 14 13 45 45 H 1.08990 * 109.48856 * 291.30681 * 16 14 13 46 46 H 1.09003 * 109.48960 * 299.08915 * 17 16 14 47 47 H 1.08998 * 109.49007 * 179.02517 * 17 16 14 48 48 H 1.09003 * 109.53682 * 63.39941 * 18 17 16 49 49 H 1.09000 * 109.53599 * 183.56063 * 18 17 16 50 50 H 0.97008 * 120.00071 * 180.02562 * 23 22 20 51 51 H 1.09003 * 109.63524 * 68.32519 * 28 19 18 52 52 H 1.09003 * 109.63677 * 188.72668 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 -0.0060 5 6 4.2717 -0.0001 -0.0059 6 6 3.5806 -1.1972 -0.0004 7 6 4.3340 -2.5023 -0.0009 8 6 2.1982 -1.1971 0.0054 9 6 1.4446 -2.5022 0.0108 10 6 1.1989 -2.9345 1.4334 11 8 1.5960 -2.2500 2.3524 12 7 0.5368 -4.0813 1.6844 13 6 0.1296 -4.7929 2.9126 14 6 -0.9681 -5.4300 2.0500 15 6 -0.0711 -5.1304 0.8413 16 6 -2.2793 -4.6486 2.0500 17 6 -3.2246 -5.2427 1.0013 18 6 -3.4829 -6.7166 1.3276 19 7 -2.1982 -7.4255 1.3954 20 6 -1.9688 -8.5320 0.6217 21 1 -2.4910 -8.6529 -0.3159 22 6 -1.0654 -9.4980 1.0426 23 7 -0.6853 -9.5394 2.3021 24 14 -0.3890 -10.7395 -0.1783 25 1 0.8515 -10.2031 -0.7938 26 1 -0.0825 -12.0103 0.5262 27 1 -1.3982 -10.9919 -1.2381 28 6 -1.1631 -6.9226 2.3118 29 1 -0.3634 0.0047 1.0277 30 1 -0.3633 0.8877 -0.5179 31 1 -0.3633 -0.8923 -0.5098 32 1 1.6582 2.1324 0.0004 33 1 4.1205 2.1324 -0.0106 34 1 5.3517 0.0000 -0.0111 35 1 4.5116 -2.8190 -1.0286 36 1 5.2885 -2.3709 0.5089 37 1 3.7470 -3.2609 0.5168 38 1 2.0319 -3.2629 -0.5037 39 1 0.4904 -2.3729 -0.4997 40 1 -0.2515 -4.1367 3.6950 41 1 0.8718 -5.5039 3.2754 42 1 0.6115 -5.9417 0.5883 43 1 -0.6115 -4.7423 -0.0221 44 1 -2.0802 -3.6042 1.8100 45 1 -2.7415 -4.7140 3.0349 46 1 -2.7690 -5.1632 0.0142 47 1 -4.1682 -4.6972 1.0115 48 1 -3.9926 -6.7933 2.2881 49 1 -4.1041 -7.1589 0.5489 50 1 -0.0536 -10.2143 2.5962 51 1 -1.4815 -7.0750 3.3431 52 1 -0.2278 -7.4537 2.1349 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981795574.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:24 Heat of formation + Delta-G solvation = 34.705421 kcal Electronic energy + Delta-G solvation = -30827.328505 eV Core-core repulsion = 26985.868628 eV Total energy + Delta-G solvation = -3841.459877 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 3.18 seconds Orbital eigenvalues (eV) -40.61844 -39.78823 -37.92379 -35.75441 -33.66571 -33.36916 -32.89202 -30.56361 -30.04284 -28.84793 -26.93885 -26.72875 -25.91699 -25.40595 -25.17943 -22.30908 -21.36799 -20.76862 -20.52713 -18.90221 -17.80984 -16.86551 -16.75105 -16.35085 -16.28018 -15.39349 -15.34132 -14.69532 -14.50432 -14.07559 -13.99712 -13.84854 -13.58448 -13.29013 -13.24536 -13.07486 -13.00987 -12.85583 -12.79135 -12.56458 -12.35205 -12.33068 -11.84675 -11.75340 -11.63805 -11.52398 -11.22662 -11.03109 -10.96205 -10.89982 -10.80288 -10.50761 -10.33392 -10.20986 -9.97101 -9.77587 -9.54568 -9.38365 -8.61032 -8.57768 -8.54541 -8.34695 -6.75057 -5.86051 -3.27205 1.29455 1.34053 2.85497 3.11660 3.32524 3.40675 3.41513 3.70401 4.42500 4.57022 4.68342 4.70124 4.83220 4.85704 4.88518 5.03249 5.20604 5.21486 5.30324 5.33541 5.38064 5.39004 5.51915 5.53232 5.56151 5.58571 5.63867 5.69838 5.75879 5.77130 5.80776 5.84629 5.91129 5.94863 6.05774 6.07420 6.14825 6.15962 6.23361 6.34678 6.42843 6.48353 6.48720 6.58512 6.62879 6.70915 6.80279 6.93626 6.98493 7.19784 7.51436 7.73351 8.02125 8.35992 8.40969 9.13624 9.77043 10.33937 11.22659 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015308 B = 0.002918 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.714438 B = 9593.122411 C =10501.028168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.068 4.068 3 C -0.128 4.128 4 C -0.116 4.116 5 C -0.128 4.128 6 C -0.067 4.067 7 C -0.118 4.118 8 C -0.062 4.062 9 C -0.104 4.104 10 C 0.535 3.465 11 O -0.544 6.544 12 N -0.642 5.642 13 C 0.116 3.884 14 C -0.110 4.110 15 C 0.121 3.879 16 C -0.082 4.082 17 C -0.133 4.133 18 C 0.144 3.856 19 N -0.590 5.590 20 C -0.250 4.250 21 H 0.067 0.933 22 C 0.003 3.997 23 N -0.903 5.903 24 Si 0.900 3.100 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.279 1.279 28 C 0.190 3.810 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.075 0.925 44 H 0.048 0.952 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.051 0.949 48 H 0.018 0.982 49 H 0.053 0.947 50 H 0.254 0.746 51 H 0.025 0.975 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.418 17.052 -5.366 18.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.068 4.068 3 C -0.146 4.146 4 C -0.134 4.134 5 C -0.146 4.146 6 C -0.067 4.067 7 C -0.174 4.174 8 C -0.062 4.062 9 C -0.143 4.143 10 C 0.324 3.676 11 O -0.422 6.422 12 N -0.378 5.378 13 C -0.006 4.006 14 C -0.113 4.113 15 C -0.001 4.001 16 C -0.120 4.120 17 C -0.172 4.172 18 C 0.018 3.982 19 N -0.313 5.313 20 C -0.380 4.380 21 H 0.085 0.915 22 C -0.196 4.196 23 N -0.548 5.548 24 Si 0.730 3.270 25 H -0.215 1.215 26 H -0.218 1.218 27 H -0.205 1.205 28 C 0.063 3.937 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.107 0.893 43 H 0.093 0.907 44 H 0.066 0.934 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.070 0.930 48 H 0.036 0.964 49 H 0.072 0.928 50 H 0.064 0.936 51 H 0.043 0.957 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.825 17.446 -4.853 18.740 hybrid contribution 0.511 -0.687 -0.547 1.015 sum 5.335 16.760 -5.400 18.398 Atomic orbital electron populations 1.20867 0.91413 1.02539 1.02647 1.19684 0.95886 0.92543 0.98648 1.20915 0.94247 0.97168 1.02243 1.21048 0.94279 0.97767 1.00309 1.20923 0.99495 0.91945 1.02208 1.19696 0.92962 0.95469 0.98585 1.20836 0.99985 0.94487 1.02099 1.19004 0.92766 0.93249 1.01205 1.20685 1.02140 0.96061 0.95430 1.20056 0.76646 0.80162 0.90742 1.90692 1.50863 1.53934 1.46689 1.50290 1.55666 1.20384 1.11420 1.23208 0.95251 0.93031 0.89120 1.22798 0.93473 1.00622 0.94375 1.23278 0.93562 0.87783 0.95504 1.21088 0.94228 0.97183 0.99504 1.22019 0.97860 0.98685 0.98667 1.20887 0.88945 0.90179 0.98203 1.44039 1.09321 1.29837 1.48060 1.19184 1.23086 0.96699 0.99021 0.91549 1.25008 1.01968 0.97161 0.95451 1.70016 1.35507 1.35963 1.13270 0.86324 0.79235 0.80764 0.80671 1.21455 1.21800 1.20455 1.20691 0.95027 0.85477 0.92502 0.90915 0.91585 0.91386 0.86300 0.86314 0.86293 0.91049 0.91446 0.91524 0.88164 0.88026 0.90806 0.89683 0.89285 0.90699 0.93371 0.92145 0.92394 0.93035 0.96424 0.92841 0.93560 0.95742 0.89044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 9.60 36.01 0.35 -0.91 16 2 C -0.07 -0.85 5.88 -104.62 -0.62 -1.46 16 3 C -0.13 -1.45 9.70 -39.58 -0.38 -1.83 16 4 C -0.12 -1.26 10.05 -39.58 -0.40 -1.65 16 5 C -0.13 -1.46 9.70 -39.58 -0.38 -1.85 16 6 C -0.07 -0.85 5.88 -104.62 -0.62 -1.47 16 7 C -0.12 -1.30 9.19 36.01 0.33 -0.97 16 8 C -0.06 -0.82 4.37 -104.62 -0.46 -1.28 16 9 C -0.10 -1.33 4.49 -29.03 -0.13 -1.46 16 10 C 0.53 8.57 7.65 -10.99 -0.08 8.49 16 11 O -0.54 -10.62 16.76 5.56 0.09 -10.53 16 12 N -0.64 -10.08 3.45 -180.42 -0.62 -10.70 16 13 C 0.12 1.88 7.97 -3.18 -0.03 1.85 16 14 C -0.11 -1.85 0.87 -154.42 -0.13 -1.98 16 15 C 0.12 1.88 7.59 -3.16 -0.02 1.86 16 16 C -0.08 -1.28 5.02 -26.82 -0.13 -1.41 16 17 C -0.13 -2.08 6.01 -26.56 -0.16 -2.24 16 18 C 0.14 2.77 6.45 -3.75 -0.02 2.75 16 19 N -0.59 -13.40 3.01 -172.47 -0.52 -13.92 16 20 C -0.25 -6.34 9.60 -15.06 -0.14 -6.48 16 21 H 0.07 1.67 7.89 -52.48 -0.41 1.25 16 22 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 23 N -0.90 -24.62 11.16 55.49 0.62 -24.00 16 24 Si 0.90 20.55 29.59 -169.99 -5.03 15.52 16 25 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 C 0.19 4.02 4.43 -3.82 -0.02 4.01 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 31 H 0.07 0.68 5.94 -51.93 -0.31 0.37 16 32 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 34 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 37 H 0.07 0.83 6.37 -51.93 -0.33 0.50 16 38 H 0.10 1.16 6.70 -51.93 -0.35 0.81 16 39 H 0.10 1.15 5.94 -51.93 -0.31 0.84 16 40 H 0.07 1.17 8.09 -51.93 -0.42 0.75 16 41 H 0.09 1.38 8.09 -51.93 -0.42 0.96 16 42 H 0.09 1.47 7.98 -51.93 -0.41 1.06 16 43 H 0.07 1.08 7.38 -51.93 -0.38 0.69 16 44 H 0.05 0.71 8.02 -51.93 -0.42 0.29 16 45 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 46 H 0.06 0.91 7.38 -51.93 -0.38 0.53 16 47 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.05 1.01 7.93 -51.93 -0.41 0.60 16 50 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 51 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 52 H 0.09 2.18 5.95 -51.93 -0.31 1.87 16 LS Contribution 405.83 15.07 6.12 6.12 Total: -1.00 -30.10 405.83 -11.13 -41.23 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -8.65 Total: 2.35 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -3.14 Total: -6.07 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: -0.52 Total: -48.62 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.03 Total: 15.52 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -30.10 -11.13 -41.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981795574.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.933 kcal (2) G-P(sol) polarization free energy of solvation -30.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.19 seconds