Wall clock time and date at job start Wed Apr 1 2020 01:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38254 * 120.00248 * 2 1 4 4 C 1.38218 * 120.00065 * 180.02562 * 3 2 1 5 5 C 1.38258 * 119.99791 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99791 * 179.97438 * 5 4 3 7 7 C 1.38210 * 120.00173 * 359.97438 * 5 4 3 8 8 C 1.50702 * 120.00036 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.47243 * 84.99864 * 8 7 5 10 10 O 1.21276 * 119.99766 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99894 * 180.02562 * 9 8 7 12 12 C 1.47670 * 134.45503 * 180.02562 * 11 9 8 13 13 C 1.53445 * 85.97550 * 155.70814 * 12 11 9 14 14 C 1.47674 * 134.45181 * 359.97438 * 11 9 8 15 15 C 1.52633 * 113.71483 * 268.85605 * 13 12 11 16 16 C 1.53183 * 109.35298 * 171.27226 * 15 13 12 17 17 C 1.52669 * 109.42857 * 58.92887 * 16 15 13 18 18 N 1.46902 * 109.34308 * 303.76841 * 17 16 15 19 19 C 1.36944 * 120.68830 * 235.31177 * 18 17 16 20 20 H 1.08001 * 119.99828 * 151.86347 * 19 18 17 21 21 C 1.38803 * 119.99932 * 331.86393 * 19 18 17 22 22 N 1.31619 * 120.00435 * 335.05172 * 21 19 18 23 23 Si 1.86799 * 120.00223 * 155.05291 * 21 19 18 24 24 H 1.48500 * 109.47410 * 89.99697 * 23 21 19 25 25 H 1.48495 * 109.47627 * 209.99922 * 23 21 19 26 26 H 1.48507 * 109.46931 * 329.99818 * 23 21 19 27 27 C 1.47119 * 118.62047 * 55.03887 * 18 17 16 28 28 C 1.38212 * 119.99937 * 180.27669 * 2 1 3 29 29 H 1.09005 * 109.46772 * 89.99817 * 1 2 3 30 30 H 1.08989 * 109.47507 * 210.00073 * 1 2 3 31 31 H 1.08997 * 109.46800 * 330.00349 * 1 2 3 32 32 H 1.08005 * 119.99995 * 0.02562 * 3 2 1 33 33 H 1.08004 * 119.99958 * 179.97438 * 4 3 2 34 34 H 1.08998 * 109.47229 * 270.02016 * 6 5 4 35 35 H 1.09004 * 109.47497 * 30.01873 * 6 5 4 36 36 H 1.09000 * 109.47556 * 150.01964 * 6 5 4 37 37 H 1.08995 * 109.46903 * 324.99781 * 8 7 5 38 38 H 1.09000 * 109.47028 * 205.00120 * 8 7 5 39 39 H 1.09001 * 113.78847 * 41.44829 * 12 11 9 40 40 H 1.08993 * 113.79524 * 269.97669 * 12 11 9 41 41 H 1.09000 * 113.79087 * 90.02906 * 14 11 9 42 42 H 1.09000 * 113.79445 * 318.55302 * 14 11 9 43 43 H 1.09008 * 109.48858 * 291.23484 * 15 13 12 44 44 H 1.08998 * 109.49590 * 51.30343 * 15 13 12 45 45 H 1.08999 * 109.49054 * 179.01805 * 16 15 13 46 46 H 1.08997 * 109.49040 * 299.09174 * 16 15 13 47 47 H 1.08998 * 109.44336 * 183.78885 * 17 16 15 48 48 H 1.08998 * 109.37503 * 63.70665 * 17 16 15 49 49 H 0.97001 * 119.99673 * 354.26202 * 22 21 19 50 50 H 1.09000 * 109.63362 * 68.58036 * 27 18 17 51 51 H 1.09001 * 109.63681 * 188.98462 * 27 18 17 52 52 H 1.08008 * 119.99937 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 -0.0002 -0.0016 6 6 5.7787 -0.0002 -0.0028 7 6 3.5806 -1.1971 -0.0016 8 6 4.3341 -2.5022 -0.0034 9 6 4.6942 -2.8763 1.4114 10 8 4.3704 -2.1544 2.3305 11 7 5.3760 -4.0131 1.6550 12 6 5.8817 -4.6744 2.8746 13 6 5.8217 -5.9756 2.0635 14 6 5.9158 -5.0967 0.8094 15 6 4.4947 -6.7187 2.1924 16 6 4.4592 -7.8725 1.1854 17 6 5.6274 -8.8177 1.4547 18 7 6.8863 -8.0623 1.4037 19 6 7.8982 -8.4460 0.5646 20 1 8.5907 -7.7107 0.1823 21 6 8.0336 -9.7799 0.2054 22 7 7.5610 -10.7243 0.9909 23 14 8.8868 -10.2348 -1.3929 24 1 10.3404 -10.4114 -1.1454 25 1 8.3162 -11.5023 -1.9154 26 1 8.6822 -9.1523 -2.3888 27 6 7.0350 -6.8813 2.2684 28 6 2.1981 -1.1969 -0.0058 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6584 2.1327 0.0004 33 1 4.1206 2.1326 -0.0010 34 1 6.1412 0.0006 -1.0307 35 1 6.1425 0.8894 0.5115 36 1 6.1425 -0.8906 0.5101 37 1 5.2440 -2.3956 -0.5938 38 1 3.7086 -3.2822 -0.4375 39 1 5.1843 -4.6457 3.7118 40 1 6.8926 -4.3745 3.1506 41 1 6.9369 -4.9225 0.4701 42 1 5.2455 -5.4033 0.0064 43 1 4.3964 -7.1149 3.2031 44 1 3.6725 -6.0328 1.9887 45 1 3.5195 -8.4154 1.2875 46 1 4.5419 -7.4751 0.1739 47 1 5.6419 -9.6016 0.6975 48 1 5.5105 -9.2650 2.4418 49 1 7.1930 -10.4944 1.8584 50 1 7.0861 -7.1949 3.3111 51 1 7.9457 -6.3448 2.0022 52 1 1.6580 -2.1323 -0.0107 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981975769.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:30 Heat of formation + Delta-G solvation = 28.838285 kcal Electronic energy + Delta-G solvation = -30253.732158 eV Core-core repulsion = 26412.017862 eV Total energy + Delta-G solvation = -3841.714296 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.75236 -39.84771 -38.13658 -36.05416 -34.33003 -32.88277 -32.49063 -30.78449 -30.03271 -29.45368 -28.03061 -26.12586 -25.60305 -25.18068 -24.83775 -22.38504 -22.32290 -20.96130 -20.30592 -18.94355 -17.92805 -17.39628 -16.87031 -16.31637 -16.09053 -15.60076 -15.47934 -14.81419 -14.52368 -14.15259 -14.11589 -14.03456 -13.67292 -13.52189 -13.38539 -13.33303 -13.08643 -12.87087 -12.85569 -12.76251 -12.40658 -12.18290 -12.09348 -11.85642 -11.80186 -11.63569 -11.40094 -11.09813 -11.08474 -11.03751 -10.75919 -10.47894 -10.27984 -10.11606 -10.04390 -9.85107 -9.66298 -9.30372 -8.86681 -8.55735 -8.48921 -8.39164 -6.92580 -6.11577 -3.28635 1.20601 1.28649 2.71016 2.93712 3.46386 3.49950 3.61411 3.64890 4.42731 4.49385 4.58442 4.61562 4.68770 4.73182 4.85908 5.00476 5.02438 5.10421 5.18182 5.25653 5.27039 5.35957 5.39870 5.40463 5.44938 5.47120 5.54114 5.56881 5.59917 5.60144 5.69535 5.72031 5.76839 5.78548 5.91390 5.92575 6.00670 6.08830 6.13530 6.27297 6.31677 6.38287 6.43806 6.45894 6.54030 6.55153 6.63020 6.68285 6.91492 7.03192 7.16205 7.83271 7.94062 8.25401 8.52744 9.05500 9.79067 10.23753 11.16919 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017722 B = 0.002408 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.607288 B =11627.386364 C =11883.039739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.094 4.094 3 C -0.119 4.119 4 C -0.117 4.117 5 C -0.074 4.074 6 C -0.116 4.116 7 C -0.058 4.058 8 C -0.099 4.099 9 C 0.535 3.465 10 O -0.541 6.541 11 N -0.643 5.643 12 C 0.115 3.885 13 C -0.101 4.101 14 C 0.121 3.879 15 C -0.083 4.083 16 C -0.135 4.135 17 C 0.148 3.852 18 N -0.595 5.595 19 C -0.349 4.349 20 H 0.056 0.944 21 C -0.023 4.023 22 N -0.915 5.915 23 Si 1.064 2.936 24 H -0.294 1.294 25 H -0.286 1.286 26 H -0.292 1.292 27 C 0.163 3.837 28 C -0.103 4.103 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.060 0.940 44 H 0.050 0.950 45 H 0.052 0.948 46 H 0.058 0.942 47 H 0.080 0.920 48 H 0.016 0.984 49 H 0.270 0.730 50 H 0.022 0.978 51 H 0.059 0.941 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.598 19.359 -2.732 21.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.137 4.137 4 C -0.135 4.135 5 C -0.074 4.074 6 C -0.172 4.172 7 C -0.059 4.059 8 C -0.139 4.139 9 C 0.325 3.675 10 O -0.419 6.419 11 N -0.378 5.378 12 C -0.008 4.008 13 C -0.104 4.104 14 C -0.001 4.001 15 C -0.120 4.120 16 C -0.175 4.175 17 C 0.022 3.978 18 N -0.319 5.319 19 C -0.478 4.478 20 H 0.073 0.927 21 C -0.225 4.225 22 N -0.555 5.555 23 Si 0.894 3.106 24 H -0.222 1.222 25 H -0.212 1.212 26 H -0.219 1.219 27 C 0.036 3.964 28 C -0.121 4.121 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.099 0.901 48 H 0.034 0.966 49 H 0.081 0.919 50 H 0.040 0.960 51 H 0.078 0.922 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.450 18.640 -3.303 21.159 hybrid contribution -0.300 1.331 1.030 1.710 sum -9.750 19.972 -2.273 22.341 Atomic orbital electron populations 1.20763 0.91295 1.02713 1.02111 1.19823 0.95950 0.93069 1.00520 1.20958 0.94126 0.97339 1.01309 1.20939 0.94150 0.97238 1.01197 1.19674 0.95883 0.92568 0.99289 1.20811 0.91450 1.02991 1.01973 1.19135 0.93331 0.93165 1.00232 1.20624 1.01980 0.96120 0.95179 1.20101 0.77818 0.78812 0.90793 1.90705 1.54738 1.50070 1.46363 1.50211 1.54543 1.21433 1.11652 1.23208 0.99023 0.88967 0.89596 1.22565 0.99287 0.93892 0.94652 1.23246 0.99015 0.82409 0.95461 1.21107 0.94177 0.96878 0.99863 1.21989 0.99447 0.97316 0.98717 1.20846 0.84040 0.93700 0.99202 1.44093 1.12512 1.29754 1.45523 1.19922 1.09983 0.93791 1.24097 0.92652 1.25811 1.00578 0.91725 1.04396 1.70752 1.40690 1.34135 1.09892 0.83559 0.75767 0.75586 0.75718 1.22196 1.21214 1.21878 1.20773 0.93188 0.88560 0.93839 1.20846 0.93243 0.97649 1.00412 0.91322 0.91607 0.91683 0.86304 0.86183 0.91125 0.91503 0.91697 0.88028 0.88228 0.90514 0.89878 0.89467 0.90220 0.92113 0.93125 0.92889 0.92362 0.90149 0.96620 0.91929 0.96036 0.92250 0.86286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.01 36.01 0.36 -0.54 16 2 C -0.09 -1.02 5.88 -104.62 -0.62 -1.63 16 3 C -0.12 -1.24 9.70 -39.58 -0.38 -1.62 16 4 C -0.12 -1.27 9.70 -39.58 -0.38 -1.66 16 5 C -0.07 -0.89 5.88 -104.63 -0.62 -1.50 16 6 C -0.12 -1.20 9.22 36.00 0.33 -0.86 16 7 C -0.06 -0.73 4.37 -104.62 -0.46 -1.19 16 8 C -0.10 -1.18 4.90 -29.03 -0.14 -1.33 16 9 C 0.54 8.03 7.27 -10.99 -0.08 7.95 16 10 O -0.54 -10.03 16.76 5.56 0.09 -9.94 16 11 N -0.64 -9.21 3.45 -180.47 -0.62 -9.84 16 12 C 0.11 1.63 7.97 -3.18 -0.03 1.60 16 13 C -0.10 -1.56 0.87 -154.45 -0.13 -1.70 16 14 C 0.12 1.72 7.59 -3.18 -0.02 1.69 16 15 C -0.08 -1.28 5.02 -26.82 -0.13 -1.42 16 16 C -0.14 -2.34 5.99 -26.81 -0.16 -2.50 16 17 C 0.15 3.21 4.62 -3.99 -0.02 3.19 16 18 N -0.60 -13.59 2.86 -172.75 -0.49 -14.08 16 19 C -0.35 -9.03 9.50 -15.06 -0.14 -9.18 16 20 H 0.06 1.43 7.94 -52.49 -0.42 1.02 16 21 C -0.02 -0.61 4.69 -17.43 -0.08 -0.70 16 22 N -0.91 -26.30 12.38 55.49 0.69 -25.61 16 23 Si 1.06 24.14 29.99 -169.99 -5.10 19.04 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 27 C 0.16 3.06 5.70 -3.81 -0.02 3.04 16 28 C -0.10 -1.24 9.34 -39.58 -0.37 -1.61 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.51 8.09 -51.94 -0.42 0.09 16 31 H 0.06 0.45 8.09 -51.93 -0.42 0.04 16 32 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 33 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 36 H 0.06 0.75 6.16 -51.93 -0.32 0.43 16 37 H 0.10 1.06 6.99 -51.93 -0.36 0.70 16 38 H 0.10 1.05 8.05 -51.93 -0.42 0.63 16 39 H 0.08 1.09 8.09 -51.93 -0.42 0.67 16 40 H 0.08 1.09 8.09 -51.93 -0.42 0.67 16 41 H 0.09 1.23 7.98 -51.93 -0.41 0.82 16 42 H 0.08 1.11 7.36 -51.93 -0.38 0.73 16 43 H 0.06 0.94 8.14 -51.92 -0.42 0.51 16 44 H 0.05 0.75 8.02 -51.93 -0.42 0.33 16 45 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.06 1.02 7.36 -51.93 -0.38 0.64 16 47 H 0.08 1.99 6.23 -51.93 -0.32 1.67 16 48 H 0.02 0.35 7.94 -51.93 -0.41 -0.06 16 49 H 0.27 7.81 6.77 -40.82 -0.28 7.54 16 50 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 51 H 0.06 1.10 7.79 -51.93 -0.40 0.70 16 52 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 LS Contribution 408.91 15.07 6.16 6.16 Total: -1.00 -31.35 408.91 -11.18 -42.53 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -8.81 Total: 1.71 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -3.10 Total: -9.96 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: -0.43 Total: -49.53 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 14 Polarization: 24.14 SS G_CDS: -5.10 Total: 19.04 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -31.35 -11.18 -42.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981975769.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.363 kcal (2) G-P(sol) polarization free energy of solvation -31.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds