Wall clock time and date at job start Wed Apr 1 2020 01:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38254 * 120.00248 * 2 1 4 4 C 1.38218 * 120.00065 * 180.02562 * 3 2 1 5 5 C 1.38258 * 119.99791 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99791 * 179.97438 * 5 4 3 7 7 C 1.38210 * 120.00173 * 359.97438 * 5 4 3 8 8 C 1.50702 * 120.00036 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.47243 * 84.99864 * 8 7 5 10 10 O 1.21276 * 119.99766 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99894 * 180.02562 * 9 8 7 12 12 C 1.47670 * 134.45503 * 180.02562 * 11 9 8 13 13 C 1.53445 * 85.97550 * 155.70814 * 12 11 9 14 14 C 1.47674 * 134.45181 * 359.97438 * 11 9 8 15 15 C 1.52633 * 113.71483 * 268.85605 * 13 12 11 16 16 C 1.53183 * 109.35298 * 171.27226 * 15 13 12 17 17 C 1.52669 * 109.42857 * 58.92887 * 16 15 13 18 18 N 1.46902 * 109.34308 * 303.76841 * 17 16 15 19 19 C 1.36944 * 120.68830 * 235.31177 * 18 17 16 20 20 H 1.08001 * 119.99828 * 151.86347 * 19 18 17 21 21 C 1.38803 * 119.99932 * 331.86393 * 19 18 17 22 22 N 1.31619 * 120.00435 * 335.05172 * 21 19 18 23 23 Si 1.86799 * 120.00223 * 155.05291 * 21 19 18 24 24 H 1.48500 * 109.47410 * 89.99697 * 23 21 19 25 25 H 1.48495 * 109.47627 * 209.99922 * 23 21 19 26 26 H 1.48507 * 109.46931 * 329.99818 * 23 21 19 27 27 C 1.47119 * 118.62047 * 55.03887 * 18 17 16 28 28 C 1.38212 * 119.99937 * 180.27669 * 2 1 3 29 29 H 1.09005 * 109.46772 * 89.99817 * 1 2 3 30 30 H 1.08989 * 109.47507 * 210.00073 * 1 2 3 31 31 H 1.08997 * 109.46800 * 330.00349 * 1 2 3 32 32 H 1.08005 * 119.99995 * 0.02562 * 3 2 1 33 33 H 1.08004 * 119.99958 * 179.97438 * 4 3 2 34 34 H 1.08998 * 109.47229 * 270.02016 * 6 5 4 35 35 H 1.09004 * 109.47497 * 30.01873 * 6 5 4 36 36 H 1.09000 * 109.47556 * 150.01964 * 6 5 4 37 37 H 1.08995 * 109.46903 * 324.99781 * 8 7 5 38 38 H 1.09000 * 109.47028 * 205.00120 * 8 7 5 39 39 H 1.09001 * 113.78847 * 41.44829 * 12 11 9 40 40 H 1.08993 * 113.79524 * 269.97669 * 12 11 9 41 41 H 1.09000 * 113.79087 * 90.02906 * 14 11 9 42 42 H 1.09000 * 113.79445 * 318.55302 * 14 11 9 43 43 H 1.09008 * 109.48858 * 291.23484 * 15 13 12 44 44 H 1.08998 * 109.49590 * 51.30343 * 15 13 12 45 45 H 1.08999 * 109.49054 * 179.01805 * 16 15 13 46 46 H 1.08997 * 109.49040 * 299.09174 * 16 15 13 47 47 H 1.08998 * 109.44336 * 183.78885 * 17 16 15 48 48 H 1.08998 * 109.37503 * 63.70665 * 17 16 15 49 49 H 0.97001 * 119.99673 * 354.26202 * 22 21 19 50 50 H 1.09000 * 109.63362 * 68.58036 * 27 18 17 51 51 H 1.09001 * 109.63681 * 188.98462 * 27 18 17 52 52 H 1.08008 * 119.99937 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 -0.0002 -0.0016 6 6 5.7787 -0.0002 -0.0028 7 6 3.5806 -1.1971 -0.0016 8 6 4.3341 -2.5022 -0.0034 9 6 4.6942 -2.8763 1.4114 10 8 4.3704 -2.1544 2.3305 11 7 5.3760 -4.0131 1.6550 12 6 5.8817 -4.6744 2.8746 13 6 5.8217 -5.9756 2.0635 14 6 5.9158 -5.0967 0.8094 15 6 4.4947 -6.7187 2.1924 16 6 4.4592 -7.8725 1.1854 17 6 5.6274 -8.8177 1.4547 18 7 6.8863 -8.0623 1.4037 19 6 7.8982 -8.4460 0.5646 20 1 8.5907 -7.7107 0.1823 21 6 8.0336 -9.7799 0.2054 22 7 7.5610 -10.7243 0.9909 23 14 8.8868 -10.2348 -1.3929 24 1 10.3404 -10.4114 -1.1454 25 1 8.3162 -11.5023 -1.9154 26 1 8.6822 -9.1523 -2.3888 27 6 7.0350 -6.8813 2.2684 28 6 2.1981 -1.1969 -0.0058 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6584 2.1327 0.0004 33 1 4.1206 2.1326 -0.0010 34 1 6.1412 0.0006 -1.0307 35 1 6.1425 0.8894 0.5115 36 1 6.1425 -0.8906 0.5101 37 1 5.2440 -2.3956 -0.5938 38 1 3.7086 -3.2822 -0.4375 39 1 5.1843 -4.6457 3.7118 40 1 6.8926 -4.3745 3.1506 41 1 6.9369 -4.9225 0.4701 42 1 5.2455 -5.4033 0.0064 43 1 4.3964 -7.1149 3.2031 44 1 3.6725 -6.0328 1.9887 45 1 3.5195 -8.4154 1.2875 46 1 4.5419 -7.4751 0.1739 47 1 5.6419 -9.6016 0.6975 48 1 5.5105 -9.2650 2.4418 49 1 7.1930 -10.4944 1.8584 50 1 7.0861 -7.1949 3.3111 51 1 7.9457 -6.3448 2.0022 52 1 1.6580 -2.1323 -0.0107 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981975769.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:29 Heat of formation + Delta-G solvation = 13.998330 kcal Electronic energy + Delta-G solvation = -30254.375666 eV Core-core repulsion = 26412.017862 eV Total energy + Delta-G solvation = -3842.357804 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.94792 -40.77437 -39.34953 -37.64110 -35.13662 -34.55594 -33.38569 -32.37437 -31.50148 -30.16687 -29.09625 -27.30206 -27.12419 -26.68427 -25.62285 -24.01498 -23.19156 -22.38979 -21.32322 -20.12672 -19.30234 -19.19361 -18.03093 -17.29975 -17.02948 -16.57756 -16.56236 -16.22866 -15.90227 -15.61272 -15.42172 -15.22353 -15.05248 -14.76228 -14.64027 -14.13935 -14.03336 -13.95286 -13.91297 -13.69829 -13.61022 -13.38012 -13.25769 -12.95723 -12.90671 -12.77325 -12.69348 -12.45994 -12.36878 -11.97971 -11.87999 -11.86582 -11.84084 -11.77171 -11.63734 -11.33511 -11.04633 -10.90580 -10.38330 -9.73962 -9.70116 -9.28695 -8.84965 -8.17251 -5.32905 0.37895 0.46673 1.56809 1.63255 1.70145 1.81979 1.86794 2.69524 2.77372 3.19208 3.33667 3.55014 3.65202 3.69784 3.76566 3.85185 3.97112 4.00070 4.10034 4.20683 4.25704 4.28241 4.31124 4.40319 4.47252 4.49732 4.56083 4.58170 4.60373 4.68258 4.70815 4.73601 4.77526 4.81939 4.83597 4.86623 4.88891 4.91129 5.01772 5.04796 5.08979 5.20153 5.21951 5.26645 5.34812 5.36474 5.51100 5.51310 5.67558 5.71176 5.91440 6.13467 6.45934 6.67740 7.09599 7.11691 7.83926 8.29323 9.07735 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017722 B = 0.002408 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.607288 B =11627.386364 C =11883.039739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.104 4.104 3 C -0.126 4.126 4 C -0.126 4.126 5 C -0.093 4.093 6 C -0.112 4.112 7 C -0.079 4.079 8 C -0.092 4.092 9 C 0.536 3.464 10 O -0.580 6.580 11 N -0.639 5.639 12 C 0.118 3.882 13 C -0.097 4.097 14 C 0.128 3.872 15 C -0.076 4.076 16 C -0.123 4.123 17 C 0.154 3.846 18 N -0.611 5.611 19 C -0.344 4.344 20 H 0.056 0.944 21 C -0.077 4.077 22 N -0.947 5.947 23 Si 1.111 2.889 24 H -0.288 1.288 25 H -0.295 1.295 26 H -0.272 1.272 27 C 0.164 3.836 28 C -0.122 4.122 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.142 0.858 33 H 0.139 0.861 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.049 0.951 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.061 0.939 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.059 0.941 47 H 0.044 0.956 48 H 0.000 1.000 49 H 0.254 0.746 50 H 0.016 0.984 51 H 0.060 0.940 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.303 21.514 -3.879 24.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.104 4.104 3 C -0.143 4.143 4 C -0.144 4.144 5 C -0.093 4.093 6 C -0.169 4.169 7 C -0.079 4.079 8 C -0.132 4.132 9 C 0.327 3.673 10 O -0.460 6.460 11 N -0.374 5.374 12 C -0.005 4.005 13 C -0.099 4.099 14 C 0.006 3.994 15 C -0.113 4.113 16 C -0.162 4.162 17 C 0.028 3.972 18 N -0.335 5.335 19 C -0.474 4.474 20 H 0.074 0.926 21 C -0.273 4.273 22 N -0.589 5.589 23 Si 0.936 3.064 24 H -0.215 1.215 25 H -0.222 1.222 26 H -0.197 1.197 27 C 0.038 3.962 28 C -0.140 4.140 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.160 0.840 33 H 0.157 0.843 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.068 0.932 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.096 0.904 40 H 0.112 0.888 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.078 0.922 47 H 0.063 0.937 48 H 0.018 0.982 49 H 0.064 0.936 50 H 0.034 0.966 51 H 0.079 0.921 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.157 20.824 -4.447 23.592 hybrid contribution -0.081 0.717 1.463 1.631 sum -10.238 21.541 -2.984 24.036 Atomic orbital electron populations 1.20800 0.89512 1.03287 1.03082 1.20197 0.97447 0.92924 0.99851 1.21308 0.94257 0.98241 1.00535 1.21261 0.94689 0.97746 1.00734 1.19967 0.96750 0.92937 0.99686 1.20803 0.90663 1.02532 1.02890 1.19320 0.93800 0.93592 1.01187 1.20626 1.02866 0.96456 0.93229 1.20588 0.76918 0.78169 0.91597 1.90685 1.56272 1.51231 1.47814 1.50186 1.54242 1.21365 1.11621 1.23203 0.99816 0.87909 0.89583 1.22384 0.97632 0.93665 0.96225 1.23212 0.99503 0.81672 0.95016 1.21046 0.94633 0.96324 0.99305 1.21823 0.98027 0.97032 0.99279 1.20705 0.85524 0.93832 0.97153 1.44300 1.12405 1.30681 1.46106 1.20182 1.10009 0.93604 1.23557 0.92641 1.27036 1.01454 0.92227 1.06615 1.70873 1.43370 1.34789 1.09881 0.82917 0.75056 0.75437 0.72948 1.21458 1.22159 1.19705 1.20851 0.95001 0.87627 0.92723 1.21075 0.93397 0.98492 1.01060 0.90069 0.91628 0.90527 0.84018 0.84291 0.89479 0.90818 0.93225 0.86571 0.86798 0.90371 0.88757 0.89083 0.89384 0.92041 0.91564 0.91112 0.92247 0.93706 0.98156 0.93600 0.96605 0.92138 0.85806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 10.01 71.24 0.71 -0.85 16 2 C -0.10 -2.10 5.88 -19.87 -0.12 -2.22 16 3 C -0.13 -2.37 9.70 22.27 0.22 -2.16 16 4 C -0.13 -2.54 9.70 22.27 0.22 -2.32 16 5 C -0.09 -2.12 5.88 -19.87 -0.12 -2.24 16 6 C -0.11 -2.17 9.22 71.23 0.66 -1.51 16 7 C -0.08 -1.89 4.37 -19.87 -0.09 -1.97 16 8 C -0.09 -2.05 4.90 29.10 0.14 -1.91 16 9 C 0.54 15.28 7.27 87.66 0.64 15.92 16 10 O -0.58 -21.04 16.76 -3.02 -0.05 -21.09 16 11 N -0.64 -17.07 3.45 -843.28 -2.91 -19.98 16 12 C 0.12 3.12 7.97 86.30 0.69 3.81 16 13 C -0.10 -2.82 0.87 -52.05 -0.05 -2.86 16 14 C 0.13 3.35 7.59 86.29 0.65 4.01 16 15 C -0.08 -2.20 5.02 30.53 0.15 -2.04 16 16 C -0.12 -4.08 5.99 30.55 0.18 -3.90 16 17 C 0.15 6.76 4.62 86.19 0.40 7.15 16 18 N -0.61 -27.92 2.86 -700.46 -2.00 -29.92 16 19 C -0.34 -17.80 9.50 84.03 0.80 -17.00 16 20 H 0.06 2.83 7.94 -2.91 -0.02 2.81 16 21 C -0.08 -4.19 4.69 84.86 0.40 -3.79 16 22 N -0.95 -55.94 12.38 21.65 0.27 -55.67 16 23 Si 1.11 48.80 29.99 68.60 2.06 50.86 16 24 H -0.29 -12.21 7.11 99.48 0.71 -11.51 16 25 H -0.30 -13.30 7.11 99.48 0.71 -12.59 16 26 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 27 C 0.16 6.03 5.70 86.19 0.49 6.52 16 28 C -0.12 -2.80 9.34 22.27 0.21 -2.59 16 29 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.06 0.92 8.09 -2.39 -0.02 0.90 16 31 H 0.08 0.89 8.09 -2.39 -0.02 0.87 16 32 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 33 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 34 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.07 1.27 8.09 -2.38 -0.02 1.25 16 36 H 0.05 1.09 6.16 -2.39 -0.01 1.08 16 37 H 0.12 2.19 6.99 -2.39 -0.02 2.17 16 38 H 0.11 2.16 8.05 -2.39 -0.02 2.14 16 39 H 0.08 2.09 8.09 -2.39 -0.02 2.07 16 40 H 0.09 2.31 8.09 -2.39 -0.02 2.29 16 41 H 0.09 2.36 7.98 -2.39 -0.02 2.34 16 42 H 0.09 2.20 7.36 -2.39 -0.02 2.18 16 43 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 44 H 0.07 1.77 8.02 -2.39 -0.02 1.76 16 45 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.06 1.97 7.36 -2.39 -0.02 1.96 16 47 H 0.04 2.28 6.23 -2.39 -0.01 2.27 16 48 H 0.00 0.02 7.94 -2.39 -0.02 0.00 16 49 H 0.25 15.32 6.77 -92.71 -0.63 14.70 16 50 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 51 H 0.06 2.19 7.79 -2.39 -0.02 2.17 16 52 H 0.12 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -68.48 408.91 4.58 -63.90 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 1.03 Total: 21.86 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: 6.19 Total: -9.95 kcal Atomic # 7 Polarization: -100.93 SS G_CDS: -4.65 Total: -105.58 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.05 Total: -21.09 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 2.06 Total: 50.86 kcal Total: -68.48 4.58 -63.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981975769.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.899 kcal (2) G-P(sol) polarization free energy of solvation -68.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds