Wall clock time and date at job start Wed Apr 1 2020 01:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38235 * 120.00088 * 2 1 4 4 C 1.38234 * 119.99882 * 180.02562 * 3 2 1 5 5 C 1.50698 * 119.99847 * 179.97438 * 4 3 2 6 6 C 1.38229 * 120.00253 * 359.97438 * 4 3 2 7 7 C 1.38237 * 120.00065 * 359.96198 * 6 4 3 8 8 C 1.50702 * 120.00210 * 179.97438 * 7 6 4 9 9 C 1.50704 * 109.46907 * 90.00157 * 8 7 6 10 10 O 1.21282 * 119.99655 * 0.02562 * 9 8 7 11 11 N 1.34771 * 119.99815 * 179.97438 * 9 8 7 12 12 C 1.47677 * 134.45047 * 179.97438 * 11 9 8 13 13 C 1.53444 * 85.96941 * 155.71345 * 12 11 9 14 14 C 1.47665 * 134.45637 * 0.02562 * 11 9 8 15 15 C 1.52628 * 113.71744 * 268.85066 * 13 12 11 16 16 C 1.53186 * 109.35647 * 171.27591 * 15 13 12 17 17 C 1.52669 * 109.42823 * 58.92861 * 16 15 13 18 18 N 1.46895 * 109.34484 * 303.77394 * 17 16 15 19 19 C 1.36941 * 120.68886 * 235.30832 * 18 17 16 20 20 H 1.07999 * 120.00331 * 151.85862 * 19 18 17 21 21 C 1.38812 * 120.00065 * 331.87001 * 19 18 17 22 22 N 1.31627 * 119.99737 * 335.04228 * 21 19 18 23 23 Si 1.86800 * 120.00421 * 155.04594 * 21 19 18 24 24 H 1.48499 * 109.46785 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47053 * 119.99848 * 23 21 19 26 26 H 1.48498 * 109.47104 * 239.99637 * 23 21 19 27 27 C 1.47110 * 118.62431 * 55.03629 * 18 17 16 28 28 C 1.38235 * 119.99905 * 180.21697 * 2 1 3 29 29 H 1.09004 * 109.46798 * 89.99645 * 1 2 3 30 30 H 1.08998 * 109.47073 * 210.00019 * 1 2 3 31 31 H 1.09000 * 109.47150 * 330.00084 * 1 2 3 32 32 H 1.07997 * 119.99769 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.47383 * 270.01902 * 5 4 3 34 34 H 1.09004 * 109.47423 * 30.01626 * 5 4 3 35 35 H 1.09001 * 109.47442 * 150.01957 * 5 4 3 36 36 H 1.07999 * 120.00130 * 179.97438 * 6 4 3 37 37 H 1.08996 * 109.47015 * 330.00158 * 8 7 6 38 38 H 1.08997 * 109.47097 * 209.99838 * 8 7 6 39 39 H 1.08997 * 113.79514 * 41.45269 * 12 11 9 40 40 H 1.08994 * 113.79584 * 269.97738 * 12 11 9 41 41 H 1.09002 * 113.79643 * 90.02067 * 14 11 9 42 42 H 1.09000 * 113.79467 * 318.54909 * 14 11 9 43 43 H 1.09002 * 109.49357 * 291.24383 * 15 13 12 44 44 H 1.09005 * 109.49027 * 51.31330 * 15 13 12 45 45 H 1.08998 * 109.49150 * 179.03004 * 16 15 13 46 46 H 1.09005 * 109.48818 * 299.09987 * 16 15 13 47 47 H 1.08998 * 109.43757 * 183.78551 * 17 16 15 48 48 H 1.09004 * 109.36592 * 63.70916 * 17 16 15 49 49 H 0.96996 * 119.99632 * 354.27097 * 22 21 19 50 50 H 1.09002 * 109.63459 * 68.57930 * 27 18 17 51 51 H 1.09005 * 109.64107 * 188.98574 * 27 18 17 52 52 H 1.08004 * 119.99988 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3341 2.5022 -0.0011 6 6 4.2717 0.0000 -0.0005 7 6 3.5806 -1.1972 0.0008 8 6 4.3340 -2.5023 0.0002 9 6 4.5871 -2.9369 1.4209 10 8 4.1938 -2.2542 2.3430 11 7 5.2494 -4.0846 1.6666 12 6 5.6634 -4.7977 2.8918 13 6 5.6647 -6.0635 2.0244 14 6 5.8528 -5.1323 0.8189 15 6 4.3323 -6.8081 2.0229 16 6 4.3725 -7.9186 0.9685 17 6 5.5180 -8.8772 1.2841 18 7 6.7767 -8.1235 1.3587 19 6 7.8485 -8.4742 0.5818 20 1 8.5671 -7.7254 0.2833 21 6 8.0111 -9.7923 0.1779 22 7 7.4819 -10.7676 0.8858 23 14 8.9811 -10.1819 -1.3703 24 1 9.4680 -8.9185 -1.9803 25 1 10.1399 -11.0439 -1.0246 26 1 8.1062 -10.8928 -2.3368 27 6 6.8599 -6.9803 2.2808 28 6 2.1982 -1.1972 -0.0045 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6582 2.1324 -0.0004 33 1 4.5151 2.8168 -1.0289 34 1 3.7453 3.2619 0.5130 35 1 5.2868 2.3719 0.5121 36 1 5.3517 0.0000 -0.0014 37 1 5.2857 -2.3721 -0.5149 38 1 3.7443 -3.2621 -0.5125 39 1 4.9056 -4.8023 3.6752 40 1 6.6507 -4.5122 3.2545 41 1 6.8966 -4.9461 0.5657 42 1 5.2457 -5.4028 -0.0450 43 1 4.1592 -7.2460 3.0060 44 1 3.5271 -6.1121 1.7875 45 1 3.4281 -8.4629 0.9774 46 1 4.5302 -7.4793 -0.0165 47 1 5.5892 -9.6287 0.4978 48 1 5.3282 -9.3651 2.2401 49 1 7.0502 -10.5733 1.7324 50 1 6.8334 -7.3374 3.3103 51 1 7.7876 -6.4353 2.1059 52 1 1.6581 -2.1325 -0.0085 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981979793.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:38 Heat of formation + Delta-G solvation = 26.623042 kcal Electronic energy + Delta-G solvation = -29894.895979 eV Core-core repulsion = 26053.085623 eV Total energy + Delta-G solvation = -3841.810356 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.70356 -39.78474 -38.18384 -36.05512 -33.68035 -33.61218 -32.85124 -30.81885 -30.12464 -28.47797 -27.26302 -26.85099 -26.12055 -25.52600 -25.12671 -22.38405 -21.40863 -20.89573 -20.54765 -18.97815 -17.92716 -17.39412 -16.85279 -16.48132 -16.17416 -15.65387 -15.50502 -14.54194 -14.46170 -14.17999 -14.15980 -14.04416 -13.68047 -13.49389 -13.43286 -13.27927 -13.10113 -13.02189 -12.81981 -12.74991 -12.46974 -12.41179 -12.00514 -11.83085 -11.75857 -11.63341 -11.39197 -11.16326 -11.12361 -11.05568 -10.74802 -10.47632 -10.27377 -10.14047 -10.04079 -9.85074 -9.65405 -9.30452 -8.71612 -8.65380 -8.54872 -8.39118 -6.92749 -6.11280 -3.28714 1.21579 1.26767 2.71411 2.93780 3.47713 3.49975 3.61174 3.62921 4.42969 4.48175 4.58347 4.59307 4.61929 4.68442 4.98106 5.00563 5.09979 5.11624 5.14951 5.19359 5.26646 5.34300 5.37966 5.39274 5.42319 5.43015 5.45119 5.54675 5.59258 5.64338 5.65242 5.69694 5.72305 5.78608 5.91577 5.93162 6.01612 6.04621 6.13563 6.27432 6.38355 6.40738 6.41357 6.43906 6.51231 6.55250 6.63145 6.68458 6.91013 7.03285 7.16318 7.83632 7.94760 8.25403 8.52865 9.05679 9.79089 10.23759 11.17060 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017972 B = 0.002270 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.621826 B =12330.868981 C =12647.685995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.083 4.083 3 C -0.124 4.124 4 C -0.084 4.084 5 C -0.113 4.113 6 C -0.111 4.111 7 C -0.053 4.053 8 C -0.098 4.098 9 C 0.535 3.465 10 O -0.543 6.543 11 N -0.642 5.642 12 C 0.115 3.885 13 C -0.101 4.101 14 C 0.121 3.879 15 C -0.082 4.082 16 C -0.136 4.136 17 C 0.148 3.852 18 N -0.596 5.596 19 C -0.348 4.348 20 H 0.056 0.944 21 C -0.023 4.023 22 N -0.916 5.916 23 Si 1.067 2.933 24 H -0.292 1.292 25 H -0.294 1.294 26 H -0.290 1.290 27 C 0.163 3.837 28 C -0.110 4.110 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.118 0.882 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.118 0.882 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.060 0.940 44 H 0.050 0.950 45 H 0.052 0.948 46 H 0.058 0.942 47 H 0.080 0.920 48 H 0.016 0.984 49 H 0.270 0.730 50 H 0.022 0.978 51 H 0.059 0.941 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.888 20.297 -2.632 22.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.083 4.083 3 C -0.142 4.142 4 C -0.084 4.084 5 C -0.169 4.169 6 C -0.129 4.129 7 C -0.053 4.053 8 C -0.138 4.138 9 C 0.324 3.676 10 O -0.420 6.420 11 N -0.378 5.378 12 C -0.008 4.008 13 C -0.104 4.104 14 C -0.001 4.001 15 C -0.120 4.120 16 C -0.175 4.175 17 C 0.022 3.978 18 N -0.319 5.319 19 C -0.477 4.477 20 H 0.074 0.926 21 C -0.226 4.226 22 N -0.555 5.555 23 Si 0.897 3.103 24 H -0.218 1.218 25 H -0.221 1.221 26 H -0.217 1.217 27 C 0.036 3.964 28 C -0.128 4.128 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.136 0.864 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.136 0.864 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.099 0.901 48 H 0.034 0.966 49 H 0.081 0.919 50 H 0.040 0.960 51 H 0.078 0.922 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.695 19.615 -3.217 22.115 hybrid contribution -0.341 1.206 1.046 1.633 sum -10.036 20.821 -2.171 23.215 Atomic orbital electron populations 1.20776 0.91247 1.02769 1.02164 1.19830 0.95944 0.93013 0.99555 1.20845 0.93470 0.97375 1.02478 1.19822 0.93821 0.95126 0.99611 1.20773 0.99950 0.94064 1.02150 1.20815 0.99465 0.91447 1.01167 1.19257 0.93509 0.93535 0.99043 1.20613 1.02168 0.95952 0.95057 1.20128 0.77796 0.78698 0.90947 1.90705 1.52057 1.52787 1.46485 1.50208 1.55054 1.21377 1.11169 1.23210 0.99859 0.88278 0.89455 1.22577 0.99161 0.93968 0.94687 1.23258 0.98352 0.82899 0.95613 1.21105 0.94097 0.97009 0.99799 1.21991 0.99449 0.97614 0.98419 1.20846 0.84202 0.93433 0.99309 1.44100 1.09634 1.33007 1.45162 1.19968 1.04974 0.94417 1.28387 0.92588 1.25818 1.01044 0.91489 1.04200 1.70721 1.38066 1.33096 1.13666 0.83501 0.75907 0.74984 0.75877 1.21824 1.22145 1.21692 1.20778 0.93529 0.88958 0.93116 1.20829 0.93345 0.97600 1.01072 0.91250 0.91533 0.91648 0.86351 0.91263 0.91647 0.91563 0.86401 0.88110 0.88093 0.90506 0.89883 0.89468 0.90200 0.92110 0.93121 0.92883 0.92360 0.90146 0.96621 0.91900 0.96032 0.92245 0.86358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.01 36.01 0.36 -0.56 16 2 C -0.08 -0.91 5.88 -104.62 -0.62 -1.53 16 3 C -0.12 -1.30 9.36 -39.58 -0.37 -1.67 16 4 C -0.08 -0.91 5.88 -104.63 -0.62 -1.52 16 5 C -0.11 -0.90 10.01 36.00 0.36 -0.54 16 6 C -0.11 -1.33 9.36 -39.59 -0.37 -1.70 16 7 C -0.05 -0.66 4.37 -104.62 -0.46 -1.12 16 8 C -0.10 -1.16 5.58 -29.03 -0.16 -1.32 16 9 C 0.53 8.09 8.05 -10.99 -0.09 8.00 16 10 O -0.54 -10.17 16.76 5.56 0.09 -10.08 16 11 N -0.64 -9.28 3.45 -180.46 -0.62 -9.90 16 12 C 0.11 1.64 7.97 -3.18 -0.03 1.61 16 13 C -0.10 -1.57 0.87 -154.42 -0.13 -1.70 16 14 C 0.12 1.73 7.59 -3.16 -0.02 1.70 16 15 C -0.08 -1.28 5.03 -26.83 -0.13 -1.41 16 16 C -0.14 -2.34 5.99 -26.80 -0.16 -2.50 16 17 C 0.15 3.22 4.62 -4.00 -0.02 3.20 16 18 N -0.60 -13.62 2.86 -172.75 -0.49 -14.11 16 19 C -0.35 -9.04 9.50 -15.06 -0.14 -9.18 16 20 H 0.06 1.46 7.94 -52.49 -0.42 1.04 16 21 C -0.02 -0.63 4.69 -17.43 -0.08 -0.71 16 22 N -0.92 -26.36 12.39 55.49 0.69 -25.67 16 23 Si 1.07 24.26 29.99 -169.99 -5.10 19.16 16 24 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 26 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 27 C 0.16 3.07 5.70 -3.81 -0.02 3.05 16 28 C -0.11 -1.33 9.36 -39.58 -0.37 -1.70 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 31 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 32 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 35 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 36 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.10 1.02 8.09 -51.93 -0.42 0.60 16 38 H 0.10 1.05 8.08 -51.93 -0.42 0.63 16 39 H 0.08 1.10 8.09 -51.93 -0.42 0.68 16 40 H 0.08 1.10 8.09 -51.93 -0.42 0.68 16 41 H 0.09 1.24 7.98 -51.93 -0.41 0.83 16 42 H 0.08 1.11 7.37 -51.93 -0.38 0.73 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.05 0.75 8.02 -51.93 -0.42 0.33 16 45 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.06 1.02 7.37 -51.93 -0.38 0.64 16 47 H 0.08 2.00 6.23 -51.93 -0.32 1.67 16 48 H 0.02 0.35 7.94 -51.93 -0.41 -0.06 16 49 H 0.27 7.83 6.77 -40.82 -0.28 7.56 16 50 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.06 1.11 7.79 -51.93 -0.40 0.70 16 52 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 LS Contribution 413.57 15.07 6.23 6.23 Total: -1.00 -31.50 413.57 -11.24 -42.74 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -8.97 Total: 1.24 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -3.07 Total: -9.60 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: -0.43 Total: -49.69 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 24.26 SS G_CDS: -5.10 Total: 19.16 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -31.50 -11.24 -42.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981979793.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.363 kcal (2) G-P(sol) polarization free energy of solvation -31.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds