Wall clock time and date at job start Wed Apr 1 2020 03:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47212 * 2 1 4 4 C 1.50700 * 109.47138 * 119.99703 * 2 1 3 5 5 O 1.21277 * 120.00662 * 240.04907 * 4 2 1 6 6 N 1.34783 * 119.99745 * 60.05505 * 4 2 1 7 7 C 1.47679 * 134.45264 * 185.01273 * 6 4 2 8 8 C 1.53440 * 85.97203 * 155.70777 * 7 6 4 9 9 C 1.47672 * 134.45790 * 5.00964 * 6 4 2 10 10 C 1.52681 * 113.71023 * 268.86035 * 8 7 6 11 11 C 1.53182 * 109.32558 * 171.27761 * 10 8 7 12 12 C 1.53142 * 109.37433 * 59.05001 * 11 10 8 13 13 N 1.46895 * 109.09066 * 303.53138 * 12 11 10 14 14 C 1.36939 * 120.68905 * 235.33001 * 13 12 11 15 15 H 1.08003 * 119.99983 * 30.06257 * 14 13 12 16 16 C 1.38813 * 120.00036 * 210.07257 * 14 13 12 17 17 N 1.31625 * 119.99839 * 10.53453 * 16 14 13 18 18 Si 1.86797 * 119.99906 * 190.53493 * 16 14 13 19 19 H 1.48498 * 109.47454 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47019 * 119.99825 * 18 16 14 21 21 H 1.48505 * 109.46932 * 239.99518 * 18 16 14 22 22 C 1.47114 * 118.62375 * 55.34635 * 13 12 11 23 23 C 1.50699 * 109.47001 * 239.99591 * 2 1 3 24 24 C 1.38240 * 119.99919 * 232.68491 * 23 2 1 25 25 C 1.38235 * 119.99514 * 179.76900 * 24 23 2 26 26 C 1.38239 * 120.00371 * 0.50439 * 25 24 23 27 27 C 1.38241 * 119.99677 * 359.75038 * 26 25 24 28 28 C 1.38234 * 119.99977 * 359.97438 * 27 26 25 29 29 H 1.09001 * 109.46602 * 304.24355 * 1 2 3 30 30 H 1.08995 * 109.46919 * 64.24257 * 1 2 3 31 31 H 1.08998 * 109.46949 * 184.24157 * 1 2 3 32 32 H 1.09007 * 109.47271 * 184.79568 * 3 2 1 33 33 H 1.09003 * 109.47420 * 304.79162 * 3 2 1 34 34 H 1.08998 * 109.47514 * 64.80027 * 3 2 1 35 35 H 1.09000 * 113.78928 * 41.44775 * 7 6 4 36 36 H 1.08995 * 113.79218 * 269.97481 * 7 6 4 37 37 H 1.08994 * 113.78964 * 90.01947 * 9 6 4 38 38 H 1.09005 * 113.78702 * 318.55551 * 9 6 4 39 39 H 1.09002 * 109.52329 * 51.30930 * 10 8 7 40 40 H 1.08999 * 109.48422 * 291.21997 * 10 8 7 41 41 H 1.09004 * 109.49021 * 299.06835 * 11 10 8 42 42 H 1.09001 * 109.49139 * 179.02343 * 11 10 8 43 43 H 1.08997 * 109.53520 * 63.41276 * 12 11 10 44 44 H 1.09007 * 109.53522 * 183.56842 * 12 11 10 45 45 H 0.96996 * 119.99542 * 180.02562 * 17 16 14 46 46 H 1.08992 * 109.63567 * 68.30965 * 22 13 12 47 47 H 1.09001 * 109.63623 * 188.92607 * 22 13 12 48 48 H 1.07995 * 120.00027 * 359.97438 * 24 23 2 49 49 H 1.07999 * 120.00243 * 180.23430 * 25 24 23 50 50 H 1.07995 * 120.00447 * 179.72081 * 26 25 24 51 51 H 1.08001 * 119.99776 * 179.97438 * 27 26 25 52 52 H 1.08002 * 119.99951 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.7289 -0.1208 2.0293 6 7 1.7076 -2.0011 1.4432 7 6 1.9335 -2.9559 2.5469 8 6 0.6956 -3.6927 2.0186 9 6 0.9835 -3.0270 0.6662 10 6 -0.6118 -3.2354 2.6611 11 6 -1.7912 -3.8690 1.9167 12 6 -1.6714 -5.3944 1.9796 13 7 -0.3723 -5.7975 1.4250 14 6 -0.3007 -6.6993 0.3969 15 1 -1.1032 -6.7619 -0.3233 16 6 0.8030 -7.5330 0.2805 17 7 1.6779 -7.6073 1.2611 18 14 1.0465 -8.5495 -1.2677 19 1 -0.0693 -8.2882 -2.2121 20 1 2.3342 -8.1770 -1.9069 21 1 1.0681 -9.9918 -0.9145 22 6 0.8504 -5.2126 1.9971 23 6 2.0323 -0.7105 -1.2304 24 6 2.9470 -1.7400 -1.1091 25 6 3.4040 -2.3948 -2.2375 26 6 2.9545 -2.0134 -3.4878 27 6 2.0439 -0.9804 -3.6094 28 6 1.5825 -0.3293 -2.4807 29 1 -0.3632 0.5783 0.8496 30 1 -0.3633 0.4466 -0.9255 31 1 -0.3633 -1.0248 0.0760 32 1 3.1267 1.4436 -0.0859 33 1 1.6083 1.9805 -0.8440 34 1 1.7487 1.9309 0.9298 35 1 1.7977 -2.5227 3.5379 36 1 2.8578 -3.5259 2.4531 37 1 1.6252 -3.6179 0.0128 38 1 0.0930 -2.6502 0.1631 39 1 -0.6860 -2.1495 2.6029 40 1 -0.6317 -3.5463 3.7056 41 1 -1.7802 -3.5458 0.8758 42 1 -2.7256 -3.5580 2.3841 43 1 -1.7428 -5.7232 3.0164 44 1 -2.4740 -5.8474 1.3975 45 1 2.4493 -8.1896 1.1795 46 1 0.9917 -5.5808 3.0132 47 1 1.7087 -5.4848 1.3829 48 1 3.3018 -2.0347 -0.1327 49 1 4.1157 -3.2016 -2.1426 50 1 3.3150 -2.5220 -4.3697 51 1 1.6930 -0.6821 -4.5863 52 1 0.8713 0.4780 -2.5757 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982141381.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:19 Heat of formation + Delta-G solvation = 46.064139 kcal Electronic energy + Delta-G solvation = -32263.707784 eV Core-core repulsion = 28422.740457 eV Total energy + Delta-G solvation = -3840.967327 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.91 seconds Orbital eigenvalues (eV) -41.04686 -39.37498 -38.10502 -35.78392 -35.08094 -32.88214 -31.06852 -30.22607 -29.95466 -29.76828 -27.38057 -26.12651 -25.85867 -25.38591 -23.53029 -22.48489 -22.25393 -21.36124 -20.33564 -18.57314 -17.82347 -17.40193 -16.77549 -16.30531 -15.79176 -15.41432 -15.16305 -14.64825 -14.37292 -14.22679 -14.01498 -13.73747 -13.53643 -13.46397 -13.34936 -13.04924 -12.90566 -12.64307 -12.50397 -12.39545 -12.15378 -12.10365 -11.89892 -11.76982 -11.61274 -11.24432 -11.17131 -10.99912 -10.93890 -10.79908 -10.72624 -10.48936 -10.27185 -10.14829 -9.95196 -9.73173 -9.50264 -9.25721 -8.86488 -8.68864 -8.54248 -8.32801 -6.67497 -5.83737 -3.29624 1.35777 1.43317 2.80794 3.10696 3.32509 3.41288 3.42353 3.79646 4.40519 4.44047 4.55477 4.79679 4.93671 4.99114 5.00532 5.07483 5.15858 5.24039 5.37883 5.40623 5.46849 5.51848 5.55312 5.55972 5.64885 5.68576 5.72038 5.76834 5.81205 5.87894 5.93876 5.94906 6.02168 6.05035 6.09165 6.13841 6.15517 6.20187 6.33267 6.36998 6.48281 6.50719 6.56290 6.60006 6.61849 6.73606 6.83369 6.96282 7.00750 7.24297 7.57308 7.74773 8.01733 8.37508 8.40768 9.16934 9.78519 10.36634 11.24642 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010342 B = 0.004790 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.780457 B = 5843.785951 C = 7311.061027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.036 4.036 3 C -0.121 4.121 4 C 0.544 3.456 5 O -0.551 6.551 6 N -0.637 5.637 7 C 0.115 3.885 8 C -0.113 4.113 9 C 0.125 3.875 10 C -0.083 4.083 11 C -0.133 4.133 12 C 0.145 3.855 13 N -0.590 5.590 14 C -0.248 4.248 15 H 0.065 0.935 16 C 0.005 3.995 17 N -0.906 5.906 18 Si 0.900 3.100 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.290 1.290 22 C 0.191 3.809 23 C -0.070 4.070 24 C -0.113 4.113 25 C -0.111 4.111 26 C -0.120 4.120 27 C -0.120 4.120 28 C -0.111 4.111 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.048 0.952 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.051 0.949 43 H 0.018 0.982 44 H 0.052 0.948 45 H 0.254 0.746 46 H 0.024 0.976 47 H 0.093 0.907 48 H 0.124 0.876 49 H 0.123 0.877 50 H 0.120 0.880 51 H 0.120 0.880 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.407 14.181 -5.078 15.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.039 4.039 3 C -0.179 4.179 4 C 0.333 3.667 5 O -0.430 6.430 6 N -0.371 5.371 7 C -0.008 4.008 8 C -0.115 4.115 9 C 0.004 3.996 10 C -0.120 4.120 11 C -0.172 4.172 12 C 0.018 3.982 13 N -0.312 5.312 14 C -0.378 4.378 15 H 0.083 0.917 16 C -0.193 4.193 17 N -0.550 5.550 18 Si 0.730 3.270 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.217 1.217 22 C 0.064 3.936 23 C -0.071 4.071 24 C -0.131 4.131 25 C -0.129 4.129 26 C -0.138 4.138 27 C -0.138 4.138 28 C -0.129 4.129 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.036 0.964 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.042 0.958 47 H 0.111 0.889 48 H 0.142 0.858 49 H 0.141 0.859 50 H 0.138 0.862 51 H 0.138 0.862 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.858 14.574 -4.690 15.334 hybrid contribution 0.278 -0.693 -0.828 1.115 sum -0.580 13.881 -5.518 14.949 Atomic orbital electron populations 1.22002 0.91838 1.03568 1.02577 1.19713 0.97339 0.96145 0.90733 1.21658 1.01706 0.92401 1.02123 1.19977 0.79242 0.80726 0.86723 1.90662 1.38348 1.66176 1.47782 1.50288 1.56037 1.08502 1.22287 1.23235 0.98916 0.87346 0.91302 1.22857 0.93843 1.00425 0.94393 1.23369 0.95107 0.85468 0.95686 1.21102 0.93544 0.98414 0.98972 1.22018 0.96347 0.99040 0.99837 1.20888 0.89499 0.91370 0.96420 1.43994 0.99576 1.48319 1.39332 1.19205 1.05463 1.11083 1.02035 0.91724 1.25098 0.99327 0.97475 0.97417 1.69960 1.14122 1.40515 1.30443 0.86255 0.77747 0.80053 0.82951 1.20262 1.21593 1.21679 1.20711 0.91413 0.83587 0.97847 1.19488 0.97538 0.96486 0.93548 1.21310 0.96928 0.95581 0.99306 1.21169 0.99883 0.99459 0.92425 1.21156 0.97825 0.97393 0.97468 1.21073 0.97838 0.96613 0.98252 1.20864 1.00216 1.00177 0.91662 0.91893 0.91401 0.91058 0.92035 0.92014 0.91553 0.90760 0.89673 0.89293 0.90550 0.93374 0.92167 0.92485 0.93077 0.96438 0.92895 0.93623 0.95785 0.88903 0.85796 0.85929 0.86197 0.86174 0.86128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 8.20 37.16 0.30 -1.33 16 2 C -0.04 -0.48 0.62 -156.81 -0.10 -0.58 16 3 C -0.12 -1.46 7.65 37.15 0.28 -1.17 16 4 C 0.54 8.86 5.37 -10.98 -0.06 8.80 16 5 O -0.55 -10.69 16.65 5.56 0.09 -10.59 16 6 N -0.64 -10.10 2.39 -180.46 -0.43 -10.53 16 7 C 0.11 1.85 7.98 -3.18 -0.03 1.83 16 8 C -0.11 -1.92 0.87 -154.41 -0.13 -2.06 16 9 C 0.13 2.04 5.35 -3.17 -0.02 2.02 16 10 C -0.08 -1.30 5.03 -26.80 -0.13 -1.43 16 11 C -0.13 -2.13 6.00 -26.56 -0.16 -2.29 16 12 C 0.14 2.82 6.45 -3.75 -0.02 2.79 16 13 N -0.59 -13.54 3.00 -172.46 -0.52 -14.06 16 14 C -0.25 -6.34 9.60 -15.06 -0.14 -6.49 16 15 H 0.07 1.65 7.85 -52.48 -0.41 1.24 16 16 C 0.01 0.14 5.06 -17.43 -0.09 0.05 16 17 N -0.91 -24.74 11.00 55.49 0.61 -24.13 16 18 Si 0.90 20.78 29.57 -169.99 -5.03 15.75 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 C 0.19 4.10 4.37 -3.81 -0.02 4.09 16 23 C -0.07 -0.93 4.29 -104.62 -0.45 -1.38 16 24 C -0.11 -1.64 6.94 -39.58 -0.27 -1.91 16 25 C -0.11 -1.50 10.05 -39.58 -0.40 -1.89 16 26 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 27 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 28 C -0.11 -1.27 8.84 -39.58 -0.35 -1.62 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.64 6.87 -51.93 -0.36 0.29 16 31 H 0.07 0.90 5.21 -51.93 -0.27 0.63 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.59 8.03 -51.93 -0.42 0.17 16 34 H 0.07 0.82 7.96 -51.93 -0.41 0.40 16 35 H 0.07 1.16 8.09 -51.93 -0.42 0.74 16 36 H 0.09 1.38 8.09 -51.93 -0.42 0.96 16 37 H 0.09 1.60 7.07 -51.93 -0.37 1.23 16 38 H 0.08 1.21 5.05 -51.93 -0.26 0.95 16 39 H 0.05 0.72 8.02 -51.93 -0.42 0.30 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.06 0.93 7.37 -51.93 -0.38 0.55 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 45 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 46 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.09 2.25 5.98 -51.93 -0.31 1.94 16 48 H 0.12 1.98 5.64 -52.49 -0.30 1.68 16 49 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 50 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 51 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 52 H 0.12 1.12 7.13 -52.49 -0.37 0.75 16 LS Contribution 394.31 15.07 5.94 5.94 Total: -1.00 -29.11 394.31 -10.38 -39.49 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -8.47 Total: 4.25 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -2.58 Total: -6.12 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: -0.34 Total: -48.72 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.75 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.11 -10.38 -39.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982141381.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.557 kcal (2) G-P(sol) polarization free energy of solvation -29.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.92 seconds