Wall clock time and date at job start Wed Apr 1 2020 01:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38236 * 120.00150 * 2 1 4 4 C 1.38231 * 120.00092 * 179.97438 * 3 2 1 5 5 C 1.38240 * 119.99981 * 359.97438 * 4 3 2 6 6 C 1.50694 * 119.99878 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.47122 * 89.99916 * 6 5 4 8 8 O 1.21283 * 120.00241 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00259 * 179.97438 * 7 6 5 10 10 C 1.48113 * 127.84381 * 0.02562 * 9 7 6 11 11 C 1.56805 * 104.74838 * 220.29245 * 10 9 7 12 12 C 1.53001 * 112.93290 * 96.96997 * 11 10 9 13 13 C 1.54055 * 109.11166 * 223.62786 * 11 10 9 14 14 N 1.47207 * 106.25202 * 129.74310 * 13 11 10 15 15 C 1.36943 * 126.69990 * 148.61818 * 14 13 11 16 16 H 1.08003 * 119.99648 * 345.36712 * 15 14 13 17 17 C 1.38804 * 119.99839 * 165.36728 * 15 14 13 18 18 N 1.31622 * 120.00247 * 350.70109 * 17 15 14 19 19 Si 1.86810 * 119.99877 * 170.70063 * 17 15 14 20 20 H 1.48493 * 109.47005 * 90.00021 * 19 17 15 21 21 H 1.48501 * 109.47040 * 209.99959 * 19 17 15 22 22 H 1.48500 * 109.46752 * 329.99813 * 19 17 15 23 23 C 1.47193 * 106.59660 * 328.35059 * 14 13 11 24 24 C 1.53764 * 106.40714 * 31.56949 * 23 14 13 25 25 C 1.52996 * 112.06170 * 103.41837 * 24 23 14 26 26 C 1.48104 * 127.84947 * 180.02562 * 9 7 6 27 27 C 1.38238 * 119.99686 * 0.27441 * 5 4 3 28 28 C 1.38225 * 120.00068 * 359.51312 * 27 5 4 29 29 H 1.08996 * 109.47059 * 90.00199 * 1 2 3 30 30 H 1.09002 * 109.47503 * 210.00090 * 1 2 3 31 31 H 1.08998 * 109.47149 * 330.00221 * 1 2 3 32 32 H 1.08007 * 119.99896 * 359.97438 * 3 2 1 33 33 H 1.07995 * 120.00046 * 180.02562 * 4 3 2 34 34 H 1.09001 * 109.47247 * 330.00036 * 6 5 4 35 35 H 1.09000 * 109.47287 * 209.99994 * 6 5 4 36 36 H 1.09004 * 110.39120 * 338.59204 * 10 9 7 37 37 H 1.09010 * 110.39114 * 100.85549 * 10 9 7 38 38 H 1.09002 * 109.46988 * 303.35153 * 12 11 10 39 39 H 1.08996 * 109.47190 * 63.34707 * 12 11 10 40 40 H 1.09005 * 109.47581 * 183.35387 * 12 11 10 41 41 H 1.09001 * 110.20919 * 10.51904 * 13 11 10 42 42 H 1.08997 * 110.07539 * 248.89375 * 13 11 10 43 43 H 0.97001 * 120.00021 * 180.02562 * 18 17 15 44 44 H 1.09005 * 110.07173 * 150.81119 * 23 14 13 45 45 H 1.09003 * 110.07129 * 272.33890 * 23 14 13 46 46 H 1.09002 * 109.47466 * 61.02114 * 25 24 23 47 47 H 1.09007 * 109.46792 * 181.01403 * 25 24 23 48 48 H 1.08999 * 109.47608 * 301.01571 * 25 24 23 49 49 H 1.09000 * 110.39159 * 21.41061 * 26 9 7 50 50 H 1.09002 * 110.39395 * 259.03300 * 26 9 7 51 51 H 1.08002 * 119.99523 * 179.72608 * 27 5 4 52 52 H 1.08005 * 120.00185 * 180.26817 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 -0.0001 0.0016 6 6 5.7786 -0.0001 0.0028 7 6 6.2799 0.0006 1.4240 8 8 5.4911 0.0005 2.3452 9 7 7.6048 0.0002 1.6713 10 6 8.7127 -0.0003 0.6883 11 6 9.7786 -0.9812 1.2888 12 6 9.6848 -2.3928 0.7061 13 6 11.1792 -0.3576 1.1383 14 7 11.8111 -0.4390 2.4653 15 6 13.1470 -0.5871 2.7280 16 1 13.8216 -0.8908 1.9411 17 6 13.6339 -0.3467 4.0054 18 7 12.8538 0.1967 4.9157 19 14 15.3965 -0.7945 4.4327 20 1 16.2841 0.3608 4.1459 21 1 15.4838 -1.1400 5.8744 22 1 15.8224 -1.9605 3.6176 23 6 10.7275 -0.3238 3.4548 24 6 9.4822 -0.9552 2.8107 25 6 9.1925 -2.3506 3.3670 26 6 8.2834 0.0002 2.9877 27 6 3.5804 -1.1972 -0.0036 28 6 2.1982 -1.1972 0.0003 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6582 2.1325 -0.0004 33 1 4.1205 2.1324 0.0010 34 1 6.1424 0.8897 -0.5112 35 1 6.1424 -0.8903 -0.5104 36 1 8.3653 -0.3733 -0.2752 37 1 9.1248 1.0030 0.5800 38 1 8.6796 -2.7842 0.8620 39 1 9.9003 -2.3601 -0.3619 40 1 10.4078 -3.0399 1.2030 41 1 11.0963 0.6836 0.8267 42 1 11.7634 -0.9209 0.4107 43 1 13.1942 0.3649 5.8083 44 1 10.9925 -0.8630 4.3643 45 1 10.5393 0.7254 3.6829 46 1 9.0051 -2.2830 4.4386 47 1 8.3150 -2.7648 2.8702 48 1 10.0507 -2.9985 3.1884 49 1 7.6119 -0.3724 3.7612 50 1 8.6306 1.0032 3.2361 51 1 4.1205 -2.1325 -0.0072 52 1 1.6581 -2.1325 0.0006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982352816.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:00 Heat of formation + Delta-G solvation = 13.371937 kcal Electronic energy + Delta-G solvation = -30439.733002 eV Core-core repulsion = 26597.348035 eV Total energy + Delta-G solvation = -3842.384967 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.63 seconds Orbital eigenvalues (eV) -40.47830 -39.59895 -38.25238 -35.00563 -33.91329 -32.81344 -31.70333 -31.02851 -30.59855 -29.91275 -27.35564 -26.16733 -25.63268 -25.03951 -24.68931 -22.84224 -22.20351 -21.00779 -20.20372 -19.06957 -17.84239 -17.00207 -16.58513 -16.17609 -16.00307 -15.31301 -15.27989 -14.90092 -14.62238 -14.39378 -14.01965 -13.93435 -13.53130 -13.47904 -13.34308 -13.28321 -12.91180 -12.65814 -12.55705 -12.20259 -12.12790 -11.96576 -11.90848 -11.81020 -11.71267 -11.31595 -11.27372 -11.19560 -11.06379 -10.85586 -10.77581 -10.57537 -10.15942 -9.96745 -9.94928 -9.80661 -9.62613 -9.56166 -9.00080 -8.64823 -8.59141 -8.46273 -6.84674 -5.80520 -3.14193 1.19410 1.32937 2.77058 3.11340 3.36529 3.42570 3.44122 3.69300 4.44701 4.52756 4.63973 4.66141 4.73724 4.77869 4.89564 4.95844 5.06218 5.16297 5.29555 5.30323 5.35627 5.38946 5.43361 5.51258 5.54476 5.58826 5.59205 5.60735 5.66574 5.74335 5.85125 5.95725 5.96333 6.01288 6.11297 6.18271 6.21083 6.25427 6.29793 6.31357 6.43180 6.46782 6.49346 6.49910 6.63706 6.73116 6.79759 6.90614 6.93066 7.37766 7.54137 7.72843 7.77776 8.22171 8.31903 9.13009 9.75294 10.47383 11.33200 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.031300 B = 0.002228 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.357306 B =12562.336346 C =12695.500415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.092 4.092 3 C -0.120 4.120 4 C -0.101 4.101 5 C -0.067 4.067 6 C -0.098 4.098 7 C 0.533 3.467 8 O -0.540 6.540 9 N -0.619 5.619 10 C 0.108 3.892 11 C -0.079 4.079 12 C -0.120 4.120 13 C 0.143 3.857 14 N -0.592 5.592 15 C -0.229 4.229 16 H 0.075 0.925 17 C -0.004 4.004 18 N -0.914 5.914 19 Si 0.910 3.090 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.178 3.822 24 C -0.093 4.093 25 C -0.119 4.119 26 C 0.118 3.882 27 C -0.101 4.101 28 C -0.120 4.120 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.049 0.951 39 H 0.049 0.951 40 H 0.065 0.935 41 H 0.020 0.980 42 H 0.044 0.956 43 H 0.254 0.746 44 H 0.077 0.923 45 H 0.025 0.975 46 H 0.051 0.949 47 H 0.043 0.957 48 H 0.061 0.939 49 H 0.076 0.924 50 H 0.074 0.926 51 H 0.119 0.881 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.991 -1.679 -12.659 22.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.092 4.092 3 C -0.138 4.138 4 C -0.119 4.119 5 C -0.067 4.067 6 C -0.138 4.138 7 C 0.321 3.679 8 O -0.417 6.417 9 N -0.353 5.353 10 C -0.015 4.015 11 C -0.081 4.081 12 C -0.177 4.177 13 C 0.016 3.984 14 N -0.316 5.316 15 C -0.358 4.358 16 H 0.093 0.907 17 C -0.202 4.202 18 N -0.561 5.561 19 Si 0.740 3.260 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.206 1.206 23 C 0.052 3.948 24 C -0.096 4.096 25 C -0.176 4.176 26 C -0.004 4.004 27 C -0.119 4.119 28 C -0.138 4.138 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.038 0.962 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.095 0.905 45 H 0.043 0.957 46 H 0.070 0.930 47 H 0.062 0.938 48 H 0.080 0.920 49 H 0.095 0.905 50 H 0.092 0.908 51 H 0.137 0.863 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -19.360 -1.649 -11.986 22.830 hybrid contribution 1.088 -0.049 0.326 1.137 sum -18.272 -1.698 -11.660 21.742 Atomic orbital electron populations 1.20775 0.91388 1.02714 1.02084 1.19898 0.95944 0.93294 1.00017 1.20953 0.94032 0.97450 1.01362 1.20961 0.94225 0.97390 0.99344 1.19286 0.93648 0.93599 1.00160 1.20646 0.92987 1.05096 0.95087 1.20046 0.80371 0.76461 0.90994 1.90717 1.54175 1.50361 1.46473 1.49071 1.04311 1.72328 1.09561 1.23088 0.86775 0.99807 0.91813 1.22748 0.95739 0.94768 0.94886 1.21607 1.01287 0.95235 0.99613 1.21429 0.90200 0.96517 0.90211 1.44442 1.02644 1.85158 0.99323 1.18964 0.82053 1.39181 0.95570 0.90684 1.24867 0.98002 1.00164 0.97118 1.69927 1.35253 1.46683 1.04195 0.86171 0.84238 0.78137 0.77486 1.21529 1.21611 1.20624 1.21268 0.83109 0.97108 0.93278 1.22508 0.96520 0.95524 0.95005 1.21631 1.00553 0.95514 0.99893 1.22580 0.93052 0.99766 0.84968 1.20959 0.94220 0.97382 0.99340 1.20952 0.94035 0.97449 1.01355 0.91349 0.91643 0.91645 0.86219 0.86254 0.88155 0.88125 0.90964 0.90486 0.93187 0.93158 0.91600 0.96204 0.93779 0.93600 0.90460 0.95724 0.93016 0.93779 0.91963 0.90527 0.90753 0.86261 0.86221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.01 36.01 0.36 -0.45 16 2 C -0.09 -0.92 5.88 -104.62 -0.62 -1.53 16 3 C -0.12 -1.25 9.70 -39.58 -0.38 -1.63 16 4 C -0.10 -1.15 9.70 -39.58 -0.38 -1.53 16 5 C -0.07 -0.79 4.37 -104.62 -0.46 -1.24 16 6 C -0.10 -1.07 4.81 -29.04 -0.14 -1.21 16 7 C 0.53 7.95 7.91 -10.99 -0.09 7.86 16 8 O -0.54 -10.16 16.30 5.55 0.09 -10.07 16 9 N -0.62 -9.18 3.31 -167.87 -0.56 -9.74 16 10 C 0.11 1.43 6.17 -1.10 -0.01 1.42 16 11 C -0.08 -1.24 1.14 -150.80 -0.17 -1.41 16 12 C -0.12 -1.65 7.61 37.16 0.28 -1.37 16 13 C 0.14 2.73 6.50 -3.11 -0.02 2.71 16 14 N -0.59 -14.22 3.38 -170.99 -0.58 -14.80 16 15 C -0.23 -6.12 10.28 -15.06 -0.15 -6.27 16 16 H 0.08 1.94 7.85 -52.48 -0.41 1.53 16 17 C 0.00 -0.12 5.38 -17.43 -0.09 -0.21 16 18 N -0.91 -26.13 10.87 55.49 0.60 -25.53 16 19 Si 0.91 21.51 29.56 -169.99 -5.03 16.48 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 23 C 0.18 4.06 4.82 -3.27 -0.02 4.04 16 24 C -0.09 -1.65 1.07 -152.33 -0.16 -1.81 16 25 C -0.12 -1.98 7.42 37.16 0.28 -1.71 16 26 C 0.12 2.00 6.22 -2.47 -0.02 1.99 16 27 C -0.10 -1.14 9.70 -39.59 -0.38 -1.53 16 28 C -0.12 -1.25 9.70 -39.59 -0.38 -1.63 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 31 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 32 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 33 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.10 0.90 8.09 -51.93 -0.42 0.48 16 35 H 0.10 0.91 7.89 -51.93 -0.41 0.50 16 36 H 0.07 0.75 7.11 -51.93 -0.37 0.38 16 37 H 0.08 1.02 7.24 -51.92 -0.38 0.65 16 38 H 0.05 0.64 7.17 -51.93 -0.37 0.27 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 1.01 7.09 -51.93 -0.37 0.64 16 41 H 0.02 0.38 7.16 -51.93 -0.37 0.01 16 42 H 0.04 0.81 7.88 -51.93 -0.41 0.40 16 43 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.08 1.99 6.49 -51.93 -0.34 1.66 16 45 H 0.02 0.61 7.10 -51.93 -0.37 0.25 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.04 0.67 7.16 -51.92 -0.37 0.30 16 48 H 0.06 1.09 7.10 -51.93 -0.37 0.72 16 49 H 0.08 1.35 7.62 -51.93 -0.40 0.95 16 50 H 0.07 1.31 7.15 -51.93 -0.37 0.94 16 51 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 52 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 LS Contribution 404.36 15.07 6.09 6.09 Total: -1.00 -31.82 404.36 -10.59 -42.41 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -8.65 Total: 0.66 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -2.56 Total: -5.51 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: -0.53 Total: -50.06 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.82 -10.59 -42.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982352816.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.778 kcal (2) G-P(sol) polarization free energy of solvation -31.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.63 seconds