Wall clock time and date at job start Wed Apr 1 2020 02:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38244 * 119.99861 * 2 1 4 4 C 1.38236 * 119.99836 * 180.26661 * 3 2 1 5 5 C 1.38238 * 119.99781 * 359.75459 * 4 3 2 6 6 C 1.38228 * 119.99957 * 359.97438 * 5 4 3 7 7 C 1.50707 * 119.99781 * 179.97438 * 6 5 4 8 8 C 1.38228 * 120.00643 * 0.02562 * 6 5 4 9 9 C 1.50699 * 120.00457 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.46890 * 90.00412 * 9 8 6 11 11 O 1.21284 * 120.00214 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00107 * 180.02562 * 10 9 8 13 13 C 1.46499 * 120.00277 * 179.97438 * 12 10 9 14 14 C 1.51228 * 111.46132 * 291.88843 * 13 12 10 15 15 C 1.55752 * 104.60879 * 275.98662 * 14 13 12 16 16 C 1.56279 * 105.90785 * 352.70631 * 15 14 13 17 17 C 1.50524 * 101.78923 * 335.78226 * 16 15 14 18 18 H 1.09008 * 108.14441 * 293.71975 * 17 16 15 19 19 N 1.42705 * 128.14750 * 161.29105 * 17 16 15 20 20 C 1.36941 * 127.10661 * 28.30952 * 19 17 16 21 21 H 1.08002 * 119.99146 * 352.76492 * 20 19 17 22 22 C 1.38806 * 119.99998 * 172.75850 * 20 19 17 23 23 N 1.31613 * 120.00552 * 5.71364 * 22 20 19 24 24 Si 1.86804 * 119.99725 * 185.70742 * 22 20 19 25 25 H 1.48500 * 109.46989 * 94.96283 * 24 22 20 26 26 H 1.48496 * 109.47362 * 214.96083 * 24 22 20 27 27 H 1.48498 * 109.47198 * 334.96547 * 24 22 20 28 28 C 1.49289 * 105.79254 * 208.28849 * 19 17 16 29 29 C 1.52128 * 111.08733 * 71.69611 * 13 12 10 30 30 H 1.09001 * 109.47458 * 270.23820 * 1 2 3 31 31 H 1.09007 * 109.47242 * 30.23891 * 1 2 3 32 32 H 1.08998 * 109.47288 * 150.23127 * 1 2 3 33 33 H 1.08003 * 119.99820 * 359.97438 * 3 2 1 34 34 H 1.08000 * 119.99856 * 179.72453 * 4 3 2 35 35 H 1.07997 * 119.99434 * 179.97438 * 5 4 3 36 36 H 1.08997 * 109.47006 * 270.02812 * 7 6 5 37 37 H 1.08996 * 109.46907 * 30.01969 * 7 6 5 38 38 H 1.09002 * 109.47287 * 150.02535 * 7 6 5 39 39 H 1.09002 * 109.46941 * 330.00321 * 9 8 6 40 40 H 1.08999 * 109.47452 * 210.00083 * 9 8 6 41 41 H 0.97003 * 119.99895 * 359.97438 * 12 10 9 42 42 H 1.09004 * 110.40767 * 34.73808 * 14 13 12 43 43 H 1.08997 * 110.40730 * 157.05645 * 14 13 12 44 44 H 1.08998 * 110.15014 * 233.60798 * 15 14 13 45 45 H 1.08996 * 110.19155 * 111.82266 * 15 14 13 46 46 H 1.09004 * 110.96916 * 217.64993 * 16 15 14 47 47 H 1.08992 * 110.97418 * 93.91772 * 16 15 14 48 48 H 0.97000 * 120.00582 * 180.02562 * 23 22 20 49 49 H 1.09010 * 110.04969 * 127.92344 * 28 19 17 50 50 H 1.09000 * 110.05174 * 249.39580 * 28 19 17 51 51 H 1.08999 * 111.15008 * 316.07532 * 29 13 12 52 52 H 1.08995 * 111.18887 * 191.86015 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0056 5 6 4.2716 0.0000 -0.0060 6 6 3.5805 -1.1970 -0.0004 7 6 4.3340 -2.5022 -0.0014 8 6 2.1982 -1.1971 0.0052 9 6 1.4447 -2.5022 0.0108 10 6 1.1992 -2.9343 1.4335 11 8 1.5973 -2.2502 2.3524 12 7 0.5381 -4.0816 1.6847 13 6 0.2999 -4.5020 3.0678 14 6 1.5891 -4.8846 3.7596 15 6 1.8309 -6.3671 3.3478 16 6 0.5454 -6.8134 2.5794 17 6 -0.4863 -5.8652 3.1292 18 1 -0.6275 -6.0926 4.1859 19 7 -1.7561 -5.5254 2.5736 20 6 -2.5440 -6.3087 1.7730 21 1 -2.1697 -7.2524 1.4046 22 6 -3.8235 -5.8898 1.4353 23 7 -4.2390 -4.6923 1.7896 24 14 -4.9558 -7.0258 0.4777 25 1 -5.8298 -7.7657 1.4232 26 1 -5.7953 -6.2232 -0.4476 27 1 -4.1425 -7.9918 -0.3036 28 6 -2.0484 -4.1396 3.0459 29 6 -0.7457 -3.6214 3.7352 30 1 -0.3634 0.0043 1.0276 31 1 -0.3634 0.8879 -0.5176 32 1 -0.3634 -0.8920 -0.5102 33 1 1.6581 2.1325 -0.0004 34 1 4.1205 2.1326 -0.0101 35 1 5.3516 0.0001 -0.0108 36 1 4.5111 -2.8186 -1.0293 37 1 5.2887 -2.3709 0.5079 38 1 3.7472 -3.2610 0.5163 39 1 2.0318 -3.2628 -0.5039 40 1 0.4902 -2.3729 -0.4994 41 1 0.2200 -4.6290 0.9498 42 1 2.4084 -4.2555 3.4116 43 1 1.4795 -4.8011 4.8408 44 1 1.9719 -6.9849 4.2347 45 1 2.7019 -6.4394 2.6966 46 1 0.2897 -7.8468 2.8138 47 1 0.6664 -6.6778 1.5047 48 1 -5.1333 -4.3997 1.5539 49 1 -2.3021 -3.5019 2.1989 50 1 -2.8698 -4.1544 3.7622 51 1 -0.5743 -2.5686 3.5110 52 1 -0.7756 -3.7920 4.8113 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990935969.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:27 Heat of formation + Delta-G solvation = 16.594348 kcal Electronic energy + Delta-G solvation = -31697.546067 eV Core-core repulsion = 27855.300835 eV Total energy + Delta-G solvation = -3842.245233 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 3.86 seconds Orbital eigenvalues (eV) -40.59210 -39.70624 -37.79840 -34.43446 -33.53172 -33.24080 -32.92869 -31.69852 -29.98922 -28.66612 -26.94656 -26.62642 -26.58063 -25.55963 -24.05729 -21.75840 -20.63656 -20.52068 -20.13873 -19.53900 -18.65316 -16.77428 -16.46848 -16.19129 -16.14883 -15.67002 -14.80788 -14.69127 -14.44509 -14.22761 -14.04789 -13.93184 -13.52955 -13.27732 -13.13724 -12.88385 -12.79130 -12.65750 -12.57761 -12.34742 -12.20927 -11.89307 -11.57829 -11.49062 -11.40968 -11.28255 -11.03571 -10.95869 -10.84668 -10.78872 -10.74682 -10.49450 -10.29059 -10.03395 -9.98361 -9.71032 -9.53275 -9.13268 -8.68385 -8.46537 -8.45035 -8.40408 -6.87782 -5.80032 -3.13644 1.42786 1.46653 3.12698 3.35097 3.40848 3.42804 3.59396 3.96340 4.42300 4.63136 4.71369 4.82709 4.96608 5.01282 5.16340 5.21061 5.24581 5.30646 5.38358 5.43269 5.44641 5.55209 5.58470 5.59916 5.68950 5.71233 5.74838 5.83553 5.85579 5.86652 5.94143 5.97723 6.01580 6.15104 6.21223 6.25579 6.31610 6.32902 6.37421 6.44031 6.50418 6.54681 6.60808 6.66723 6.77001 6.82544 6.90563 7.11014 7.24546 7.53324 7.54247 7.73689 8.12104 8.15975 8.77984 9.09342 9.76086 10.46113 11.33082 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012710 B = 0.003665 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.546252 B = 7638.087728 C = 8750.705414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.064 4.064 3 C -0.128 4.128 4 C -0.118 4.118 5 C -0.130 4.130 6 C -0.069 4.069 7 C -0.115 4.115 8 C -0.057 4.057 9 C -0.112 4.112 10 C 0.517 3.483 11 O -0.539 6.539 12 N -0.692 5.692 13 C 0.133 3.867 14 C -0.111 4.111 15 C -0.116 4.116 16 C -0.113 4.113 17 C 0.158 3.842 18 H 0.021 0.979 19 N -0.583 5.583 20 C -0.233 4.233 21 H 0.079 0.921 22 C -0.002 4.002 23 N -0.916 5.916 24 Si 0.907 3.093 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.281 1.281 28 C 0.181 3.819 29 C -0.139 4.139 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.402 0.598 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.063 0.937 47 H 0.064 0.936 48 H 0.253 0.747 49 H 0.057 0.943 50 H 0.038 0.962 51 H 0.067 0.933 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.250 5.775 -3.677 16.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.064 4.064 3 C -0.146 4.146 4 C -0.136 4.136 5 C -0.148 4.148 6 C -0.069 4.069 7 C -0.172 4.172 8 C -0.058 4.058 9 C -0.152 4.152 10 C 0.302 3.698 11 O -0.417 6.417 12 N -0.343 5.343 13 C 0.045 3.955 14 C -0.150 4.150 15 C -0.154 4.154 16 C -0.152 4.152 17 C 0.047 3.953 18 H 0.038 0.962 19 N -0.307 5.307 20 C -0.361 4.361 21 H 0.097 0.903 22 C -0.199 4.199 23 N -0.562 5.562 24 Si 0.738 3.262 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.206 1.206 28 C 0.058 3.942 29 C -0.178 4.178 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.115 0.885 40 H 0.122 0.878 41 H 0.237 0.763 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.083 0.917 48 H 0.063 0.937 49 H 0.076 0.924 50 H 0.056 0.944 51 H 0.085 0.915 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 15.263 6.247 -3.116 16.784 hybrid contribution -0.930 -0.751 -0.783 1.429 sum 14.333 5.496 -3.900 15.838 Atomic orbital electron populations 1.20887 0.91159 1.02625 1.02978 1.19725 0.96006 0.92512 0.98177 1.20925 0.94201 0.97242 1.02213 1.21023 0.94285 0.97699 1.00571 1.20884 0.99321 0.92011 1.02544 1.19653 0.92978 0.95320 0.98949 1.20813 0.99870 0.94648 1.01865 1.18978 0.92632 0.93313 1.00834 1.20785 1.02290 0.96014 0.96112 1.20235 0.78117 0.80916 0.90502 1.90671 1.51275 1.53545 1.46195 1.45720 1.56677 1.23309 1.08606 1.21478 0.93890 0.98344 0.81741 1.21864 0.97504 0.95660 0.99969 1.22821 0.97377 0.95791 0.99444 1.21820 0.94485 0.99133 0.99755 1.20826 0.86805 0.91368 0.96269 0.96173 1.43655 1.16072 1.13599 1.57342 1.19003 0.94094 1.00259 1.22760 0.90345 1.24803 0.97254 0.96904 1.00919 1.69930 1.18345 1.17247 1.50677 0.86179 0.81031 0.79832 0.79163 1.21645 1.21816 1.20634 1.21957 0.91085 0.84358 0.96839 1.22777 0.96751 0.99293 0.98964 0.90638 0.91724 0.91170 0.86379 0.86474 0.86498 0.91304 0.91649 0.91451 0.88459 0.87817 0.76273 0.91289 0.91316 0.92029 0.92330 0.91829 0.91710 0.93676 0.92445 0.94386 0.91475 0.91823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 9.60 36.00 0.35 -1.21 16 2 C -0.06 -0.89 5.88 -104.62 -0.62 -1.50 16 3 C -0.13 -1.60 9.70 -39.58 -0.38 -1.98 16 4 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 5 C -0.13 -1.55 9.70 -39.59 -0.38 -1.93 16 6 C -0.07 -0.89 5.88 -104.63 -0.62 -1.51 16 7 C -0.12 -1.24 9.19 36.01 0.33 -0.91 16 8 C -0.06 -0.80 4.37 -104.63 -0.46 -1.26 16 9 C -0.11 -1.51 4.75 -29.04 -0.14 -1.65 16 10 C 0.52 8.49 6.75 -10.99 -0.07 8.42 16 11 O -0.54 -10.44 14.19 5.55 0.08 -10.37 16 12 N -0.69 -11.66 4.39 -46.58 -0.20 -11.86 16 13 C 0.13 2.38 0.40 -130.71 -0.05 2.33 16 14 C -0.11 -1.75 6.04 -26.16 -0.16 -1.91 16 15 C -0.12 -1.61 6.94 -23.50 -0.16 -1.77 16 16 C -0.11 -1.83 6.46 -26.21 -0.17 -2.00 16 17 C 0.16 3.08 2.64 -68.72 -0.18 2.90 16 18 H 0.02 0.43 7.94 -51.92 -0.41 0.02 16 19 N -0.58 -13.77 3.12 -162.67 -0.51 -14.27 16 20 C -0.23 -6.03 10.28 -15.06 -0.15 -6.18 16 21 H 0.08 1.96 7.84 -52.49 -0.41 1.55 16 22 C 0.00 -0.05 5.49 -17.44 -0.10 -0.14 16 23 N -0.92 -25.75 10.61 55.49 0.59 -25.17 16 24 Si 0.91 21.19 29.56 -169.99 -5.02 16.17 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 C 0.18 4.27 5.29 -0.76 0.00 4.26 16 29 C -0.14 -2.75 6.19 -25.44 -0.16 -2.91 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.06 0.70 8.09 -51.92 -0.42 0.28 16 32 H 0.07 0.90 5.94 -51.93 -0.31 0.59 16 33 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 34 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 38 H 0.07 0.79 6.37 -51.93 -0.33 0.46 16 39 H 0.10 1.10 6.70 -51.93 -0.35 0.75 16 40 H 0.10 1.34 5.94 -51.93 -0.31 1.03 16 41 H 0.40 6.76 7.81 -40.82 -0.32 6.45 16 42 H 0.07 1.14 6.86 -51.93 -0.36 0.78 16 43 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.06 1.03 7.38 -51.93 -0.38 0.65 16 48 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 49 H 0.06 1.49 7.32 -51.92 -0.38 1.11 16 50 H 0.04 0.99 7.82 -51.93 -0.41 0.58 16 51 H 0.07 1.38 7.18 -51.93 -0.37 1.00 16 52 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 399.52 15.07 6.02 6.02 Total: -1.00 -30.24 399.52 -11.11 -41.35 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -8.54 Total: 8.85 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -3.52 Total: -10.72 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: -0.12 Total: -51.30 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.08 Total: -10.37 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.24 -11.11 -41.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990935969.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.943 kcal (2) G-P(sol) polarization free energy of solvation -30.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.86 seconds