Wall clock time and date at job start Wed Apr 1 2020 02:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38244 * 119.99861 * 2 1 4 4 C 1.38236 * 119.99836 * 180.26661 * 3 2 1 5 5 C 1.38238 * 119.99781 * 359.75459 * 4 3 2 6 6 C 1.38228 * 119.99957 * 359.97438 * 5 4 3 7 7 C 1.50707 * 119.99781 * 179.97438 * 6 5 4 8 8 C 1.38228 * 120.00643 * 0.02562 * 6 5 4 9 9 C 1.50699 * 120.00457 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.46890 * 90.00412 * 9 8 6 11 11 O 1.21284 * 120.00214 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00107 * 180.02562 * 10 9 8 13 13 C 1.46499 * 120.00277 * 179.97438 * 12 10 9 14 14 C 1.51228 * 111.46132 * 291.88843 * 13 12 10 15 15 C 1.55752 * 104.60879 * 275.98662 * 14 13 12 16 16 C 1.56279 * 105.90785 * 352.70631 * 15 14 13 17 17 C 1.50524 * 101.78923 * 335.78226 * 16 15 14 18 18 H 1.09008 * 108.14441 * 293.71975 * 17 16 15 19 19 N 1.42705 * 128.14750 * 161.29105 * 17 16 15 20 20 C 1.36941 * 127.10661 * 28.30952 * 19 17 16 21 21 H 1.08002 * 119.99146 * 352.76492 * 20 19 17 22 22 C 1.38806 * 119.99998 * 172.75850 * 20 19 17 23 23 N 1.31613 * 120.00552 * 5.71364 * 22 20 19 24 24 Si 1.86804 * 119.99725 * 185.70742 * 22 20 19 25 25 H 1.48500 * 109.46989 * 94.96283 * 24 22 20 26 26 H 1.48496 * 109.47362 * 214.96083 * 24 22 20 27 27 H 1.48498 * 109.47198 * 334.96547 * 24 22 20 28 28 C 1.49289 * 105.79254 * 208.28849 * 19 17 16 29 29 C 1.52128 * 111.08733 * 71.69611 * 13 12 10 30 30 H 1.09001 * 109.47458 * 270.23820 * 1 2 3 31 31 H 1.09007 * 109.47242 * 30.23891 * 1 2 3 32 32 H 1.08998 * 109.47288 * 150.23127 * 1 2 3 33 33 H 1.08003 * 119.99820 * 359.97438 * 3 2 1 34 34 H 1.08000 * 119.99856 * 179.72453 * 4 3 2 35 35 H 1.07997 * 119.99434 * 179.97438 * 5 4 3 36 36 H 1.08997 * 109.47006 * 270.02812 * 7 6 5 37 37 H 1.08996 * 109.46907 * 30.01969 * 7 6 5 38 38 H 1.09002 * 109.47287 * 150.02535 * 7 6 5 39 39 H 1.09002 * 109.46941 * 330.00321 * 9 8 6 40 40 H 1.08999 * 109.47452 * 210.00083 * 9 8 6 41 41 H 0.97003 * 119.99895 * 359.97438 * 12 10 9 42 42 H 1.09004 * 110.40767 * 34.73808 * 14 13 12 43 43 H 1.08997 * 110.40730 * 157.05645 * 14 13 12 44 44 H 1.08998 * 110.15014 * 233.60798 * 15 14 13 45 45 H 1.08996 * 110.19155 * 111.82266 * 15 14 13 46 46 H 1.09004 * 110.96916 * 217.64993 * 16 15 14 47 47 H 1.08992 * 110.97418 * 93.91772 * 16 15 14 48 48 H 0.97000 * 120.00582 * 180.02562 * 23 22 20 49 49 H 1.09010 * 110.04969 * 127.92344 * 28 19 17 50 50 H 1.09000 * 110.05174 * 249.39580 * 28 19 17 51 51 H 1.08999 * 111.15008 * 316.07532 * 29 13 12 52 52 H 1.08995 * 111.18887 * 191.86015 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0056 5 6 4.2716 0.0000 -0.0060 6 6 3.5805 -1.1970 -0.0004 7 6 4.3340 -2.5022 -0.0014 8 6 2.1982 -1.1971 0.0052 9 6 1.4447 -2.5022 0.0108 10 6 1.1992 -2.9343 1.4335 11 8 1.5973 -2.2502 2.3524 12 7 0.5381 -4.0816 1.6847 13 6 0.2999 -4.5020 3.0678 14 6 1.5891 -4.8846 3.7596 15 6 1.8309 -6.3671 3.3478 16 6 0.5454 -6.8134 2.5794 17 6 -0.4863 -5.8652 3.1292 18 1 -0.6275 -6.0926 4.1859 19 7 -1.7561 -5.5254 2.5736 20 6 -2.5440 -6.3087 1.7730 21 1 -2.1697 -7.2524 1.4046 22 6 -3.8235 -5.8898 1.4353 23 7 -4.2390 -4.6923 1.7896 24 14 -4.9558 -7.0258 0.4777 25 1 -5.8298 -7.7657 1.4232 26 1 -5.7953 -6.2232 -0.4476 27 1 -4.1425 -7.9918 -0.3036 28 6 -2.0484 -4.1396 3.0459 29 6 -0.7457 -3.6214 3.7352 30 1 -0.3634 0.0043 1.0276 31 1 -0.3634 0.8879 -0.5176 32 1 -0.3634 -0.8920 -0.5102 33 1 1.6581 2.1325 -0.0004 34 1 4.1205 2.1326 -0.0101 35 1 5.3516 0.0001 -0.0108 36 1 4.5111 -2.8186 -1.0293 37 1 5.2887 -2.3709 0.5079 38 1 3.7472 -3.2610 0.5163 39 1 2.0318 -3.2628 -0.5039 40 1 0.4902 -2.3729 -0.4994 41 1 0.2200 -4.6290 0.9498 42 1 2.4084 -4.2555 3.4116 43 1 1.4795 -4.8011 4.8408 44 1 1.9719 -6.9849 4.2347 45 1 2.7019 -6.4394 2.6966 46 1 0.2897 -7.8468 2.8138 47 1 0.6664 -6.6778 1.5047 48 1 -5.1333 -4.3997 1.5539 49 1 -2.3021 -3.5019 2.1989 50 1 -2.8698 -4.1544 3.7622 51 1 -0.5743 -2.5686 3.5110 52 1 -0.7756 -3.7920 4.8113 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990935969.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:22 Heat of formation + Delta-G solvation = 1.597963 kcal Electronic energy + Delta-G solvation = -31698.196359 eV Core-core repulsion = 27855.300835 eV Total energy + Delta-G solvation = -3842.895525 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.80 seconds Orbital eigenvalues (eV) -41.99187 -40.80274 -39.13731 -36.14095 -34.46483 -34.42519 -34.18451 -33.49782 -31.62688 -29.74569 -28.53077 -27.73462 -27.50692 -26.94549 -25.91906 -22.96295 -22.12544 -21.57081 -21.36348 -21.05016 -20.08206 -18.37006 -18.01200 -17.44774 -17.18645 -16.98804 -16.36811 -16.05611 -15.80117 -15.67471 -15.36650 -15.20615 -14.96730 -14.43851 -14.11371 -14.06683 -14.05257 -13.80308 -13.76197 -13.56428 -13.49224 -13.27311 -13.03090 -12.95221 -12.84138 -12.64784 -12.48883 -12.37490 -12.16103 -12.10036 -12.01156 -11.80190 -11.75149 -11.68701 -11.54069 -11.35278 -11.03036 -10.71396 -10.56667 -9.83781 -9.45310 -9.38769 -8.84141 -7.84385 -5.18942 0.46874 0.51996 1.48321 1.50080 1.58089 1.81751 2.36650 2.51366 2.91543 3.11265 3.37592 3.71150 3.74760 3.89179 3.92256 4.02798 4.09096 4.12797 4.14187 4.23662 4.32596 4.41414 4.42943 4.43516 4.49856 4.56666 4.59327 4.63892 4.77258 4.77758 4.81424 4.83509 4.84721 4.95693 4.98802 4.99545 5.03015 5.08084 5.12510 5.24250 5.30483 5.31462 5.37255 5.49155 5.58906 5.59880 5.62772 5.67860 5.69005 5.80272 5.85350 6.18999 6.19673 6.76420 7.05464 7.44219 7.77979 8.51286 9.28560 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012710 B = 0.003665 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.546252 B = 7638.087728 C = 8750.705414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.086 4.086 3 C -0.140 4.140 4 C -0.120 4.120 5 C -0.136 4.136 6 C -0.082 4.082 7 C -0.113 4.113 8 C -0.079 4.079 9 C -0.105 4.105 10 C 0.519 3.481 11 O -0.569 6.569 12 N -0.693 5.693 13 C 0.142 3.858 14 C -0.107 4.107 15 C -0.101 4.101 16 C -0.108 4.108 17 C 0.146 3.854 18 H 0.012 0.988 19 N -0.595 5.595 20 C -0.232 4.232 21 H 0.089 0.911 22 C -0.060 4.060 23 N -0.949 5.949 24 Si 0.971 3.029 25 H -0.294 1.294 26 H -0.300 1.300 27 H -0.263 1.263 28 C 0.195 3.805 29 C -0.128 4.128 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.133 0.867 34 H 0.144 0.856 35 H 0.141 0.859 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.055 0.945 39 H 0.121 0.879 40 H 0.104 0.896 41 H 0.402 0.598 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.070 0.930 47 H 0.067 0.933 48 H 0.245 0.755 49 H 0.024 0.976 50 H 0.001 0.999 51 H 0.056 0.944 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.085 4.755 -4.536 19.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.086 4.086 3 C -0.158 4.158 4 C -0.138 4.138 5 C -0.154 4.154 6 C -0.082 4.082 7 C -0.169 4.169 8 C -0.079 4.079 9 C -0.144 4.144 10 C 0.307 3.693 11 O -0.448 6.448 12 N -0.343 5.343 13 C 0.054 3.946 14 C -0.145 4.145 15 C -0.139 4.139 16 C -0.147 4.147 17 C 0.037 3.963 18 H 0.029 0.971 19 N -0.318 5.318 20 C -0.361 4.361 21 H 0.107 0.893 22 C -0.253 4.253 23 N -0.598 5.598 24 Si 0.800 3.200 25 H -0.222 1.222 26 H -0.227 1.227 27 H -0.187 1.187 28 C 0.071 3.929 29 C -0.167 4.167 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.151 0.849 34 H 0.162 0.838 35 H 0.159 0.841 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.139 0.861 40 H 0.122 0.878 41 H 0.238 0.762 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.098 0.902 46 H 0.089 0.911 47 H 0.086 0.914 48 H 0.054 0.946 49 H 0.043 0.957 50 H 0.020 0.980 51 H 0.075 0.925 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 18.136 5.197 -3.980 19.281 hybrid contribution -1.791 -0.372 -0.471 1.889 sum 16.345 4.825 -4.451 17.614 Atomic orbital electron populations 1.20838 0.91405 1.03358 1.01691 1.19928 0.96161 0.93343 0.99199 1.21208 0.95014 0.97429 1.02116 1.21398 0.94080 0.98943 0.99338 1.21251 1.00675 0.91730 1.01754 1.19997 0.92789 0.96792 0.98604 1.20833 0.99803 0.93236 1.03061 1.19137 0.93439 0.93270 1.02090 1.20751 1.02837 0.96815 0.94008 1.20692 0.77057 0.80071 0.91499 1.90650 1.52500 1.54211 1.47459 1.45735 1.56726 1.23702 1.08136 1.21408 0.94459 0.96296 0.82446 1.21851 0.95597 0.97038 1.00057 1.22753 0.96705 0.94136 1.00350 1.21833 0.94076 0.98578 1.00163 1.21038 0.85852 0.93692 0.95704 0.97054 1.43763 1.17635 1.13362 1.57080 1.19392 0.94268 1.00475 1.21916 0.89284 1.25563 0.98864 0.98173 1.02698 1.70139 1.18111 1.18982 1.52520 0.85172 0.79009 0.78124 0.77702 1.22189 1.22678 1.18746 1.21601 0.91877 0.84587 0.94840 1.22623 0.95800 0.98913 0.99411 0.92884 0.89927 0.91569 0.84868 0.83816 0.84102 0.89413 0.90551 0.92559 0.86076 0.87751 0.76212 0.91712 0.90742 0.90045 0.90173 0.91143 0.91419 0.94595 0.95729 0.98049 0.92526 0.90796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.12 9.60 71.23 0.68 -2.44 16 2 C -0.09 -2.37 5.88 -19.86 -0.12 -2.49 16 3 C -0.14 -3.35 9.70 22.27 0.22 -3.14 16 4 C -0.12 -2.54 10.05 22.27 0.22 -2.32 16 5 C -0.14 -2.94 9.70 22.27 0.22 -2.73 16 6 C -0.08 -1.98 5.88 -19.87 -0.12 -2.10 16 7 C -0.11 -2.16 9.19 71.24 0.65 -1.51 16 8 C -0.08 -2.16 4.37 -19.87 -0.09 -2.25 16 9 C -0.10 -2.77 4.75 29.10 0.14 -2.63 16 10 C 0.52 17.00 6.75 87.66 0.59 17.59 16 11 O -0.57 -22.09 14.19 -3.04 -0.04 -22.13 16 12 N -0.69 -23.11 4.39 -419.67 -1.84 -24.95 16 13 C 0.14 5.01 0.40 4.32 0.00 5.01 16 14 C -0.11 -3.14 6.04 30.97 0.19 -2.95 16 15 C -0.10 -2.46 6.94 32.69 0.23 -2.23 16 16 C -0.11 -3.23 6.46 30.93 0.20 -3.03 16 17 C 0.15 5.61 2.64 46.47 0.12 5.73 16 18 H 0.01 0.49 7.94 -2.38 -0.02 0.47 16 19 N -0.60 -28.55 3.12 -668.58 -2.09 -30.64 16 20 C -0.23 -12.05 10.28 84.03 0.86 -11.18 16 21 H 0.09 4.36 7.84 -2.91 -0.02 4.34 16 22 C -0.06 -3.24 5.49 84.86 0.47 -2.77 16 23 N -0.95 -55.64 10.61 21.65 0.23 -55.41 16 24 Si 0.97 44.09 29.56 68.60 2.03 46.11 16 25 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 26 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 27 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 28 C 0.20 9.67 5.29 86.96 0.46 10.13 16 29 C -0.13 -5.23 6.19 31.43 0.19 -5.04 16 30 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.08 1.82 8.09 -2.38 -0.02 1.80 16 32 H 0.07 1.77 5.94 -2.39 -0.01 1.75 16 33 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 34 H 0.14 2.19 8.06 -2.91 -0.02 2.16 16 35 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 36 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.08 1.28 8.09 -2.39 -0.02 1.26 16 38 H 0.06 1.20 6.37 -2.39 -0.02 1.18 16 39 H 0.12 2.55 6.70 -2.39 -0.02 2.53 16 40 H 0.10 2.72 5.94 -2.39 -0.01 2.71 16 41 H 0.40 13.38 7.81 -92.71 -0.72 12.65 16 42 H 0.06 2.00 6.86 -2.39 -0.02 1.98 16 43 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 47 H 0.07 1.99 7.38 -2.39 -0.02 1.97 16 48 H 0.24 14.15 8.31 -92.71 -0.77 13.38 16 49 H 0.02 1.35 7.32 -2.38 -0.02 1.34 16 50 H 0.00 0.07 7.82 -2.39 -0.02 0.05 16 51 H 0.06 2.42 7.18 -2.39 -0.02 2.40 16 52 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 Total: -1.00 -67.33 399.52 3.61 -63.72 By element: Atomic # 1 Polarization: 33.44 SS G_CDS: 0.19 Total: 33.63 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: 5.13 Total: -10.34 kcal Atomic # 7 Polarization: -107.30 SS G_CDS: -3.70 Total: -111.00 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.04 Total: -22.13 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -67.33 3.61 -63.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990935969.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.319 kcal (2) G-P(sol) polarization free energy of solvation -67.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.80 seconds