Wall clock time and date at job start Wed Apr 1 2020 02:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38238 * 119.99987 * 2 1 4 4 C 1.38230 * 119.99547 * 180.29755 * 3 2 1 5 5 C 1.38237 * 120.00308 * 359.69656 * 4 3 2 6 6 C 1.38232 * 119.99770 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.99960 * 179.97438 * 6 5 4 8 8 C 1.38230 * 119.99903 * 179.73846 * 2 1 3 9 9 C 1.50707 * 119.99987 * 0.02562 * 8 2 1 10 10 C 1.50693 * 109.46981 * 269.72543 * 9 8 2 11 11 O 1.21281 * 120.00401 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00076 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00198 * 179.97438 * 12 10 9 14 14 C 1.51232 * 111.07012 * 68.33433 * 13 12 10 15 15 C 1.55052 * 104.92122 * 84.45103 * 14 13 12 16 16 C 1.56282 * 105.91810 * 6.66073 * 15 14 13 17 17 C 1.50511 * 101.75806 * 24.64090 * 16 15 14 18 18 H 1.08995 * 107.74685 * 66.77411 * 17 16 15 19 19 N 1.42704 * 128.16433 * 198.67348 * 17 16 15 20 20 C 1.36938 * 127.10620 * 331.74763 * 19 17 16 21 21 H 1.08001 * 119.99678 * 8.11242 * 20 19 17 22 22 C 1.38805 * 120.00247 * 188.10833 * 20 19 17 23 23 N 1.31621 * 119.99758 * 7.94687 * 22 20 19 24 24 Si 1.86796 * 120.00235 * 187.94491 * 22 20 19 25 25 H 1.48499 * 109.47438 * 94.78082 * 24 22 20 26 26 H 1.48498 * 109.47382 * 214.78317 * 24 22 20 27 27 H 1.48504 * 109.47011 * 334.78426 * 24 22 20 28 28 C 1.49297 * 105.79369 * 151.73284 * 19 17 16 29 29 C 1.52138 * 111.09311 * 288.30915 * 13 12 10 30 30 H 1.08998 * 109.47148 * 270.26308 * 1 2 3 31 31 H 1.09004 * 109.47006 * 30.25669 * 1 2 3 32 32 H 1.08991 * 109.47326 * 150.26061 * 1 2 3 33 33 H 1.08001 * 119.99992 * 0.02562 * 3 2 1 34 34 H 1.08003 * 120.00079 * 179.72440 * 4 3 2 35 35 H 1.08003 * 119.99923 * 180.02562 * 5 4 3 36 36 H 1.08994 * 109.46946 * 270.02261 * 7 6 5 37 37 H 1.09001 * 109.47021 * 30.02015 * 7 6 5 38 38 H 1.09001 * 109.46705 * 150.02062 * 7 6 5 39 39 H 1.09006 * 109.46910 * 29.72445 * 9 8 2 40 40 H 1.09003 * 109.46768 * 149.72353 * 9 8 2 41 41 H 0.97003 * 119.99833 * 0.02562 * 12 10 9 42 42 H 1.08996 * 110.40853 * 202.66893 * 14 13 12 43 43 H 1.08996 * 110.41186 * 325.10425 * 14 13 12 44 44 H 1.08995 * 109.84151 * 247.71776 * 15 14 13 45 45 H 1.08997 * 110.54742 * 125.97809 * 15 14 13 46 46 H 1.09002 * 110.96674 * 266.52127 * 16 15 14 47 47 H 1.09002 * 111.00124 * 142.77776 * 16 15 14 48 48 H 0.97006 * 119.99843 * 179.97438 * 23 22 20 49 49 H 1.08995 * 110.05043 * 110.59831 * 28 19 17 50 50 H 1.08997 * 110.04891 * 232.02830 * 28 19 17 51 51 H 1.08997 * 111.14912 * 43.91222 * 29 13 12 52 52 H 1.08996 * 111.14852 * 168.14176 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 -0.0062 5 6 4.2717 -0.0001 -0.0061 6 6 3.5805 -1.1972 -0.0003 7 6 4.3340 -2.5024 -0.0007 8 6 2.1982 -1.1971 0.0055 9 6 1.4446 -2.5022 0.0108 10 6 1.1988 -2.9345 1.4334 11 8 1.5968 -2.2504 2.3524 12 7 0.5367 -4.0812 1.6844 13 6 0.2983 -4.5017 3.0674 14 6 -0.6791 -3.5759 3.7563 15 6 -2.0805 -4.1092 3.3613 16 6 -1.8288 -5.4431 2.5870 17 6 -0.4892 -5.8642 3.1288 18 1 -0.6195 -6.1103 4.1826 19 7 0.4371 -6.7927 2.5664 20 6 0.1487 -7.8640 1.7637 21 1 -0.8542 -8.0024 1.3875 22 6 1.1452 -8.7721 1.4336 23 7 2.3243 -8.6949 2.0134 24 14 0.8129 -10.1038 0.1665 25 1 1.2754 -9.6441 -1.1677 26 1 1.5433 -11.3402 0.5446 27 1 -0.6442 -10.3857 0.1152 28 6 1.7858 -6.3546 3.0335 29 6 1.5868 -4.9691 3.7275 30 1 -0.3633 0.0047 1.0276 31 1 -0.3633 0.8877 -0.5178 32 1 -0.3633 -0.8922 -0.5097 33 1 1.6582 2.1325 0.0004 34 1 4.1206 2.1324 -0.0107 35 1 5.3517 -0.0001 -0.0105 36 1 4.5113 -2.8191 -1.0284 37 1 5.2885 -2.3710 0.5088 38 1 3.7469 -3.2609 0.5171 39 1 0.4902 -2.3728 -0.4997 40 1 2.0318 -3.2629 -0.5038 41 1 0.2188 -4.6286 0.9494 42 1 -0.5555 -3.6293 4.8379 43 1 -0.5434 -2.5522 3.4075 44 1 -2.5819 -3.3886 2.7153 45 1 -2.6822 -4.2985 4.2502 46 1 -1.7772 -5.2667 1.5126 47 1 -2.5948 -6.1820 2.8226 48 1 3.0206 -9.3298 1.7830 49 1 2.1867 -7.0753 3.7461 50 1 2.4611 -6.2542 2.1838 51 1 2.4120 -4.2938 3.5012 52 1 1.4583 -5.0832 4.8038 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990935976.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:38 Heat of formation + Delta-G solvation = 16.069570 kcal Electronic energy + Delta-G solvation = -31694.222393 eV Core-core repulsion = 27851.954405 eV Total energy + Delta-G solvation = -3842.267989 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -40.61368 -39.72213 -37.81592 -34.45749 -33.54799 -33.25638 -32.95347 -31.70894 -29.99275 -28.68129 -26.96718 -26.64605 -26.59577 -25.56914 -24.06192 -21.77243 -20.65045 -20.54302 -20.14608 -19.53719 -18.66768 -16.79212 -16.46655 -16.21075 -16.16269 -15.68222 -14.83165 -14.70395 -14.43588 -14.21843 -14.10418 -13.94662 -13.56153 -13.26183 -13.15659 -12.90743 -12.80960 -12.68305 -12.56433 -12.35861 -12.22978 -11.92141 -11.60836 -11.48888 -11.43389 -11.30489 -11.03000 -10.91773 -10.84724 -10.80797 -10.78049 -10.49552 -10.28614 -10.04579 -10.01675 -9.71105 -9.54507 -9.14468 -8.68202 -8.48467 -8.45931 -8.42799 -6.87291 -5.80115 -3.13993 1.41588 1.45113 3.10682 3.34473 3.40550 3.42760 3.57573 3.94754 4.42197 4.62224 4.69195 4.81751 4.95199 4.98874 5.14442 5.16070 5.24423 5.31802 5.36515 5.43685 5.46003 5.48478 5.60046 5.65665 5.68971 5.72445 5.72776 5.75305 5.82822 5.86905 5.93361 5.96082 6.00140 6.14725 6.20521 6.24261 6.29872 6.32399 6.36842 6.43440 6.50266 6.53409 6.59641 6.65408 6.75245 6.81936 6.90102 7.09581 7.22140 7.45584 7.58517 7.71806 8.10018 8.15484 8.75958 9.08547 9.76025 10.46189 11.33388 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012404 B = 0.003703 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.716056 B = 7559.202553 C = 8659.041564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.069 4.069 3 C -0.129 4.129 4 C -0.118 4.118 5 C -0.128 4.128 6 C -0.064 4.064 7 C -0.119 4.119 8 C -0.057 4.057 9 C -0.113 4.113 10 C 0.516 3.484 11 O -0.539 6.539 12 N -0.693 5.693 13 C 0.135 3.865 14 C -0.111 4.111 15 C -0.116 4.116 16 C -0.114 4.114 17 C 0.157 3.843 18 H 0.021 0.979 19 N -0.582 5.582 20 C -0.234 4.234 21 H 0.078 0.922 22 C -0.002 4.002 23 N -0.915 5.915 24 Si 0.907 3.093 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.181 3.819 29 C -0.137 4.137 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.402 0.598 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.057 0.943 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.063 0.937 48 H 0.253 0.747 49 H 0.049 0.951 50 H 0.043 0.957 51 H 0.067 0.933 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.516 16.501 -4.063 17.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.069 4.069 3 C -0.147 4.147 4 C -0.136 4.136 5 C -0.146 4.146 6 C -0.064 4.064 7 C -0.176 4.176 8 C -0.058 4.058 9 C -0.152 4.152 10 C 0.302 3.698 11 O -0.416 6.416 12 N -0.344 5.344 13 C 0.047 3.953 14 C -0.150 4.150 15 C -0.154 4.154 16 C -0.152 4.152 17 C 0.047 3.953 18 H 0.038 0.962 19 N -0.306 5.306 20 C -0.362 4.362 21 H 0.096 0.904 22 C -0.199 4.199 23 N -0.561 5.561 24 Si 0.738 3.262 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.206 1.206 28 C 0.057 3.943 29 C -0.176 4.176 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.237 0.763 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.082 0.918 48 H 0.063 0.937 49 H 0.067 0.933 50 H 0.062 0.938 51 H 0.085 0.915 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.118 16.733 -3.479 17.221 hybrid contribution -0.131 -1.065 -0.971 1.447 sum -2.249 15.668 -4.451 16.442 Atomic orbital electron populations 1.20851 0.91559 1.02368 1.02556 1.19653 0.95768 0.92556 0.98949 1.20883 0.94224 0.97106 1.02507 1.21024 0.94280 0.97711 1.00548 1.20929 0.99485 0.91975 1.02198 1.19721 0.93022 0.95457 0.98213 1.20853 1.00104 0.94498 1.02107 1.18976 0.92728 0.93204 1.00849 1.20790 1.02063 0.96259 0.96104 1.20236 0.77953 0.81106 0.90510 1.90672 1.50664 1.54106 1.46172 1.45744 1.57186 1.22843 1.08650 1.21467 0.95999 0.96146 0.81698 1.21738 0.93919 0.99246 1.00057 1.22702 0.96782 0.96426 0.99525 1.21830 0.97551 0.96119 0.99727 1.20809 0.90201 0.88037 0.96277 0.96205 1.43629 1.01064 1.28323 1.57563 1.18995 0.95672 0.99833 1.21682 0.90381 1.24800 0.96382 0.98565 1.00199 1.69944 1.03910 1.38356 1.43863 0.86178 0.77406 0.81370 0.81252 1.21665 1.21795 1.20611 1.21912 0.86482 0.89125 0.96753 1.22756 0.96719 0.99028 0.99121 0.90958 0.91796 0.91431 0.86482 0.86464 0.86375 0.91154 0.91492 0.91090 0.88236 0.88039 0.76299 0.91421 0.91207 0.92389 0.91972 0.91736 0.91825 0.93685 0.93286 0.93821 0.91468 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 9.60 36.01 0.35 -0.89 16 2 C -0.07 -0.89 5.88 -104.62 -0.62 -1.50 16 3 C -0.13 -1.53 9.70 -39.58 -0.38 -1.91 16 4 C -0.12 -1.36 10.05 -39.58 -0.40 -1.75 16 5 C -0.13 -1.58 9.70 -39.58 -0.38 -1.97 16 6 C -0.06 -0.88 5.88 -104.62 -0.62 -1.49 16 7 C -0.12 -1.53 9.19 36.01 0.33 -1.20 16 8 C -0.06 -0.79 4.37 -104.62 -0.46 -1.25 16 9 C -0.11 -1.49 4.75 -29.04 -0.14 -1.63 16 10 C 0.52 8.40 6.73 -10.99 -0.07 8.32 16 11 O -0.54 -10.35 14.19 5.56 0.08 -10.27 16 12 N -0.69 -11.55 4.38 -46.57 -0.20 -11.75 16 13 C 0.13 2.40 0.42 -130.70 -0.05 2.34 16 14 C -0.11 -1.74 6.01 -26.54 -0.16 -1.90 16 15 C -0.12 -1.61 6.91 -23.88 -0.17 -1.77 16 16 C -0.11 -1.84 6.46 -26.21 -0.17 -2.01 16 17 C 0.16 3.07 2.62 -68.72 -0.18 2.89 16 18 H 0.02 0.43 7.98 -51.93 -0.41 0.01 16 19 N -0.58 -13.75 3.12 -162.69 -0.51 -14.26 16 20 C -0.23 -6.06 10.26 -15.06 -0.15 -6.21 16 21 H 0.08 1.96 7.84 -52.49 -0.41 1.55 16 22 C 0.00 -0.06 5.45 -17.43 -0.10 -0.15 16 23 N -0.91 -25.89 10.80 55.49 0.60 -25.30 16 24 Si 0.91 21.17 29.56 -169.99 -5.02 16.15 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 C 0.18 4.25 5.28 -0.75 0.00 4.25 16 29 C -0.14 -2.71 6.22 -25.43 -0.16 -2.87 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 32 H 0.07 0.66 5.94 -51.93 -0.31 0.35 16 33 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 34 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 35 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 38 H 0.07 1.04 6.37 -51.93 -0.33 0.71 16 39 H 0.10 1.10 5.94 -51.93 -0.31 0.79 16 40 H 0.10 1.29 6.70 -51.93 -0.35 0.94 16 41 H 0.40 6.66 7.81 -40.82 -0.32 6.34 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.07 1.14 6.84 -51.93 -0.36 0.79 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.06 1.02 7.38 -51.93 -0.38 0.64 16 47 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 49 H 0.05 1.29 7.51 -51.93 -0.39 0.90 16 50 H 0.04 1.12 7.75 -51.93 -0.40 0.72 16 51 H 0.07 1.37 7.18 -51.93 -0.37 1.00 16 52 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 399.75 15.07 6.02 6.02 Total: -1.00 -30.42 399.75 -11.11 -41.53 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -8.55 Total: 8.58 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -3.53 Total: -10.70 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: -0.11 Total: -51.31 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.08 Total: -10.27 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.42 -11.11 -41.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990935976.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.600 kcal (2) G-P(sol) polarization free energy of solvation -30.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds