Wall clock time and date at job start Wed Apr 1 2020 02:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38238 * 119.99987 * 2 1 4 4 C 1.38230 * 119.99547 * 180.29755 * 3 2 1 5 5 C 1.38237 * 120.00308 * 359.69656 * 4 3 2 6 6 C 1.38232 * 119.99770 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.99960 * 179.97438 * 6 5 4 8 8 C 1.38230 * 119.99903 * 179.73846 * 2 1 3 9 9 C 1.50707 * 119.99987 * 0.02562 * 8 2 1 10 10 C 1.50693 * 109.46981 * 269.72543 * 9 8 2 11 11 O 1.21281 * 120.00401 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00076 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00198 * 179.97438 * 12 10 9 14 14 C 1.51232 * 111.07012 * 68.33433 * 13 12 10 15 15 C 1.55052 * 104.92122 * 84.45103 * 14 13 12 16 16 C 1.56282 * 105.91810 * 6.66073 * 15 14 13 17 17 C 1.50511 * 101.75806 * 24.64090 * 16 15 14 18 18 H 1.08995 * 107.74685 * 66.77411 * 17 16 15 19 19 N 1.42704 * 128.16433 * 198.67348 * 17 16 15 20 20 C 1.36938 * 127.10620 * 331.74763 * 19 17 16 21 21 H 1.08001 * 119.99678 * 8.11242 * 20 19 17 22 22 C 1.38805 * 120.00247 * 188.10833 * 20 19 17 23 23 N 1.31621 * 119.99758 * 7.94687 * 22 20 19 24 24 Si 1.86796 * 120.00235 * 187.94491 * 22 20 19 25 25 H 1.48499 * 109.47438 * 94.78082 * 24 22 20 26 26 H 1.48498 * 109.47382 * 214.78317 * 24 22 20 27 27 H 1.48504 * 109.47011 * 334.78426 * 24 22 20 28 28 C 1.49297 * 105.79369 * 151.73284 * 19 17 16 29 29 C 1.52138 * 111.09311 * 288.30915 * 13 12 10 30 30 H 1.08998 * 109.47148 * 270.26308 * 1 2 3 31 31 H 1.09004 * 109.47006 * 30.25669 * 1 2 3 32 32 H 1.08991 * 109.47326 * 150.26061 * 1 2 3 33 33 H 1.08001 * 119.99992 * 0.02562 * 3 2 1 34 34 H 1.08003 * 120.00079 * 179.72440 * 4 3 2 35 35 H 1.08003 * 119.99923 * 180.02562 * 5 4 3 36 36 H 1.08994 * 109.46946 * 270.02261 * 7 6 5 37 37 H 1.09001 * 109.47021 * 30.02015 * 7 6 5 38 38 H 1.09001 * 109.46705 * 150.02062 * 7 6 5 39 39 H 1.09006 * 109.46910 * 29.72445 * 9 8 2 40 40 H 1.09003 * 109.46768 * 149.72353 * 9 8 2 41 41 H 0.97003 * 119.99833 * 0.02562 * 12 10 9 42 42 H 1.08996 * 110.40853 * 202.66893 * 14 13 12 43 43 H 1.08996 * 110.41186 * 325.10425 * 14 13 12 44 44 H 1.08995 * 109.84151 * 247.71776 * 15 14 13 45 45 H 1.08997 * 110.54742 * 125.97809 * 15 14 13 46 46 H 1.09002 * 110.96674 * 266.52127 * 16 15 14 47 47 H 1.09002 * 111.00124 * 142.77776 * 16 15 14 48 48 H 0.97006 * 119.99843 * 179.97438 * 23 22 20 49 49 H 1.08995 * 110.05043 * 110.59831 * 28 19 17 50 50 H 1.08997 * 110.04891 * 232.02830 * 28 19 17 51 51 H 1.08997 * 111.14912 * 43.91222 * 29 13 12 52 52 H 1.08996 * 111.14852 * 168.14176 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 -0.0062 5 6 4.2717 -0.0001 -0.0061 6 6 3.5805 -1.1972 -0.0003 7 6 4.3340 -2.5024 -0.0007 8 6 2.1982 -1.1971 0.0055 9 6 1.4446 -2.5022 0.0108 10 6 1.1988 -2.9345 1.4334 11 8 1.5968 -2.2504 2.3524 12 7 0.5367 -4.0812 1.6844 13 6 0.2983 -4.5017 3.0674 14 6 -0.6791 -3.5759 3.7563 15 6 -2.0805 -4.1092 3.3613 16 6 -1.8288 -5.4431 2.5870 17 6 -0.4892 -5.8642 3.1288 18 1 -0.6195 -6.1103 4.1826 19 7 0.4371 -6.7927 2.5664 20 6 0.1487 -7.8640 1.7637 21 1 -0.8542 -8.0024 1.3875 22 6 1.1452 -8.7721 1.4336 23 7 2.3243 -8.6949 2.0134 24 14 0.8129 -10.1038 0.1665 25 1 1.2754 -9.6441 -1.1677 26 1 1.5433 -11.3402 0.5446 27 1 -0.6442 -10.3857 0.1152 28 6 1.7858 -6.3546 3.0335 29 6 1.5868 -4.9691 3.7275 30 1 -0.3633 0.0047 1.0276 31 1 -0.3633 0.8877 -0.5178 32 1 -0.3633 -0.8922 -0.5097 33 1 1.6582 2.1325 0.0004 34 1 4.1206 2.1324 -0.0107 35 1 5.3517 -0.0001 -0.0105 36 1 4.5113 -2.8191 -1.0284 37 1 5.2885 -2.3710 0.5088 38 1 3.7469 -3.2609 0.5171 39 1 0.4902 -2.3728 -0.4997 40 1 2.0318 -3.2629 -0.5038 41 1 0.2188 -4.6286 0.9494 42 1 -0.5555 -3.6293 4.8379 43 1 -0.5434 -2.5522 3.4075 44 1 -2.5819 -3.3886 2.7153 45 1 -2.6822 -4.2985 4.2502 46 1 -1.7772 -5.2667 1.5126 47 1 -2.5948 -6.1820 2.8226 48 1 3.0206 -9.3298 1.7830 49 1 2.1867 -7.0753 3.7461 50 1 2.4611 -6.2542 2.1838 51 1 2.4120 -4.2938 3.5012 52 1 1.4583 -5.0832 4.8038 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990935976.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:35 Heat of formation + Delta-G solvation = 0.867503 kcal Electronic energy + Delta-G solvation = -31694.881604 eV Core-core repulsion = 27851.954405 eV Total energy + Delta-G solvation = -3842.927200 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 4.25 seconds Orbital eigenvalues (eV) -42.00626 -40.80693 -39.14246 -36.16150 -34.46342 -34.44356 -34.19260 -33.50928 -31.62825 -29.74796 -28.55287 -27.74490 -27.50854 -26.94781 -25.92836 -22.96889 -22.14251 -21.57326 -21.35854 -21.05001 -20.08701 -18.36789 -18.01559 -17.45473 -17.19626 -16.99348 -16.37415 -16.06435 -15.77914 -15.70712 -15.37079 -15.20714 -14.99683 -14.43203 -14.11473 -14.06868 -14.05376 -13.79080 -13.77297 -13.57763 -13.52922 -13.28331 -13.05548 -12.98456 -12.80085 -12.63257 -12.48038 -12.37910 -12.17464 -12.09829 -12.03280 -11.80987 -11.75415 -11.68597 -11.54866 -11.34804 -11.04708 -10.72741 -10.54780 -9.84765 -9.45245 -9.39112 -8.84525 -7.85062 -5.20022 0.46686 0.51906 1.48962 1.49201 1.58276 1.81434 2.35846 2.51403 2.91364 3.10558 3.35580 3.70752 3.75237 3.89143 3.92201 4.02200 4.08156 4.12445 4.14976 4.22724 4.31685 4.40624 4.42482 4.44235 4.47667 4.57501 4.59863 4.63214 4.71576 4.79477 4.81416 4.84029 4.86662 4.95497 4.97113 5.00413 5.03657 5.07647 5.12277 5.24251 5.29991 5.31811 5.37861 5.43438 5.57002 5.61431 5.62683 5.67856 5.67907 5.80021 5.84274 6.18312 6.19503 6.76101 7.04244 7.43866 7.77452 8.50927 9.28358 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012404 B = 0.003703 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.716056 B = 7559.202553 C = 8659.041564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.082 4.082 3 C -0.136 4.136 4 C -0.120 4.120 5 C -0.140 4.140 6 C -0.086 4.086 7 C -0.115 4.115 8 C -0.079 4.079 9 C -0.105 4.105 10 C 0.520 3.480 11 O -0.568 6.568 12 N -0.693 5.693 13 C 0.144 3.856 14 C -0.106 4.106 15 C -0.102 4.102 16 C -0.108 4.108 17 C 0.145 3.855 18 H 0.009 0.991 19 N -0.594 5.594 20 C -0.232 4.232 21 H 0.089 0.911 22 C -0.061 4.061 23 N -0.950 5.950 24 Si 0.972 3.028 25 H -0.288 1.288 26 H -0.303 1.303 27 H -0.265 1.265 28 C 0.195 3.805 29 C -0.127 4.127 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.133 0.867 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.045 0.955 39 H 0.124 0.876 40 H 0.102 0.898 41 H 0.403 0.597 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.245 0.755 49 H 0.011 0.989 50 H 0.012 0.988 51 H 0.057 0.943 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.720 18.515 -5.114 19.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.082 4.082 3 C -0.154 4.154 4 C -0.138 4.138 5 C -0.158 4.158 6 C -0.086 4.086 7 C -0.172 4.172 8 C -0.079 4.079 9 C -0.144 4.144 10 C 0.307 3.693 11 O -0.448 6.448 12 N -0.344 5.344 13 C 0.056 3.944 14 C -0.145 4.145 15 C -0.140 4.140 16 C -0.147 4.147 17 C 0.036 3.964 18 H 0.027 0.973 19 N -0.317 5.317 20 C -0.361 4.361 21 H 0.107 0.893 22 C -0.254 4.254 23 N -0.598 5.598 24 Si 0.801 3.199 25 H -0.215 1.215 26 H -0.230 1.230 27 H -0.190 1.190 28 C 0.071 3.929 29 C -0.166 4.166 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.159 0.841 34 H 0.162 0.838 35 H 0.151 0.849 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.064 0.936 39 H 0.142 0.858 40 H 0.121 0.879 41 H 0.238 0.762 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.098 0.902 45 H 0.099 0.901 46 H 0.087 0.913 47 H 0.087 0.913 48 H 0.054 0.946 49 H 0.029 0.971 50 H 0.030 0.970 51 H 0.076 0.924 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.367 18.768 -4.536 19.796 hybrid contribution 0.601 -1.650 -0.591 1.853 sum -3.766 17.118 -5.127 18.262 Atomic orbital electron populations 1.20869 0.90123 1.03782 1.02308 1.19994 0.97050 0.92545 0.98623 1.21255 0.94627 0.97800 1.01743 1.21395 0.94568 0.98462 0.99345 1.21203 1.00480 0.91959 1.02141 1.19933 0.93458 0.96039 0.99168 1.20806 0.99813 0.93893 1.02643 1.19134 0.92986 0.93711 1.02092 1.20757 1.03362 0.96317 0.93980 1.20694 0.76792 0.80316 0.91514 1.90652 1.51706 1.54971 1.47448 1.45753 1.57457 1.23054 1.08139 1.21380 0.94577 0.95953 0.82479 1.21722 0.94289 0.98364 1.00119 1.22635 0.95702 0.95223 1.00415 1.21842 0.95174 0.97410 1.00250 1.21018 0.92016 0.87743 0.95586 0.97328 1.43745 1.01928 1.28700 1.57367 1.19390 0.95911 0.99906 1.20901 0.89330 1.25580 0.96388 1.01078 1.02368 1.70152 1.04792 1.39262 1.45631 0.85155 0.77741 0.78238 0.78770 1.21478 1.22987 1.18993 1.21562 0.86330 0.90274 0.94749 1.22600 0.97939 0.96560 0.99479 0.91869 0.89691 0.90780 0.84128 0.83847 0.84879 0.89823 0.91062 0.93597 0.85799 0.87945 0.76170 0.90909 0.91539 0.90158 0.90066 0.91291 0.91269 0.94589 0.97065 0.97010 0.92404 0.90743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.16 9.60 71.24 0.68 -1.48 16 2 C -0.08 -1.97 5.88 -19.86 -0.12 -2.08 16 3 C -0.14 -2.92 9.70 22.27 0.22 -2.70 16 4 C -0.12 -2.52 10.05 22.27 0.22 -2.30 16 5 C -0.14 -3.31 9.70 22.27 0.22 -3.10 16 6 C -0.09 -2.33 5.88 -19.87 -0.12 -2.45 16 7 C -0.11 -3.02 9.19 71.24 0.65 -2.37 16 8 C -0.08 -2.12 4.37 -19.87 -0.09 -2.21 16 9 C -0.10 -2.71 4.75 29.10 0.14 -2.58 16 10 C 0.52 16.75 6.73 87.65 0.59 17.34 16 11 O -0.57 -21.83 14.19 -3.03 -0.04 -21.88 16 12 N -0.69 -22.82 4.38 -419.65 -1.84 -24.66 16 13 C 0.14 5.06 0.42 4.33 0.00 5.06 16 14 C -0.11 -3.11 6.01 30.72 0.18 -2.93 16 15 C -0.10 -2.46 6.91 32.44 0.22 -2.24 16 16 C -0.11 -3.24 6.46 30.93 0.20 -3.04 16 17 C 0.15 5.60 2.62 46.47 0.12 5.72 16 18 H 0.01 0.38 7.98 -2.39 -0.02 0.36 16 19 N -0.59 -28.56 3.12 -668.62 -2.09 -30.65 16 20 C -0.23 -12.11 10.26 84.03 0.86 -11.24 16 21 H 0.09 4.35 7.84 -2.91 -0.02 4.33 16 22 C -0.06 -3.31 5.45 84.86 0.46 -2.85 16 23 N -0.95 -56.08 10.80 21.65 0.23 -55.84 16 24 Si 0.97 44.05 29.56 68.60 2.03 46.08 16 25 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 26 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 28 C 0.20 9.66 5.28 86.96 0.46 10.12 16 29 C -0.13 -5.15 6.22 31.43 0.20 -4.96 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.08 1.21 8.09 -2.38 -0.02 1.19 16 32 H 0.07 1.26 5.94 -2.39 -0.01 1.25 16 33 H 0.14 2.25 8.06 -2.91 -0.02 2.22 16 34 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 35 H 0.13 2.60 8.06 -2.91 -0.02 2.58 16 36 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.07 1.74 8.09 -2.39 -0.02 1.72 16 38 H 0.04 1.41 6.37 -2.39 -0.02 1.39 16 39 H 0.12 2.52 5.94 -2.38 -0.01 2.51 16 40 H 0.10 2.61 6.70 -2.39 -0.02 2.60 16 41 H 0.40 13.12 7.81 -92.71 -0.72 12.39 16 42 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.07 2.04 6.84 -2.39 -0.02 2.02 16 44 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.08 1.71 8.14 -2.39 -0.02 1.70 16 46 H 0.07 2.01 7.38 -2.39 -0.02 1.99 16 47 H 0.07 2.00 8.14 -2.39 -0.02 1.99 16 48 H 0.24 14.23 8.31 -92.70 -0.77 13.46 16 49 H 0.01 0.63 7.51 -2.39 -0.02 0.61 16 50 H 0.01 0.64 7.75 -2.39 -0.02 0.62 16 51 H 0.06 2.45 7.18 -2.39 -0.02 2.43 16 52 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 Total: -1.00 -67.81 399.75 3.60 -64.21 By element: Atomic # 1 Polarization: 32.82 SS G_CDS: 0.19 Total: 33.02 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: 5.11 Total: -10.27 kcal Atomic # 7 Polarization: -107.46 SS G_CDS: -3.69 Total: -111.15 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.04 Total: -21.88 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -67.81 3.60 -64.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990935976.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.074 kcal (2) G-P(sol) polarization free energy of solvation -67.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.25 seconds