Wall clock time and date at job start Wed Apr 1 2020 02:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38240 * 119.99736 * 2 1 4 4 C 1.38234 * 119.99667 * 179.97438 * 3 2 1 5 5 C 1.38234 * 120.00244 * 0.09088 * 4 3 2 6 6 C 1.38230 * 119.99880 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.99865 * 180.02562 * 6 5 4 8 8 C 1.38234 * 120.00196 * 180.09306 * 2 1 3 9 9 C 1.50702 * 119.99895 * 0.24922 * 8 2 1 10 10 C 1.50690 * 109.47286 * 269.72882 * 9 8 2 11 11 O 1.21284 * 120.00243 * 0.02562 * 10 9 8 12 12 N 1.34785 * 119.99981 * 179.97438 * 10 9 8 13 13 C 1.46498 * 119.99813 * 179.97438 * 12 10 9 14 14 C 1.53578 * 112.24816 * 300.35610 * 13 12 10 15 15 C 1.54178 * 106.69748 * 237.98348 * 14 13 12 16 16 C 1.54753 * 104.36426 * 335.86214 * 15 14 13 17 17 C 1.54775 * 103.21404 * 37.33453 * 16 15 14 18 18 H 1.08999 * 111.87102 * 84.91297 * 17 16 15 19 19 N 1.46976 * 109.49024 * 209.44591 * 17 16 15 20 20 C 1.36932 * 125.58085 * 294.54284 * 19 17 16 21 21 H 1.08003 * 119.99984 * 359.97438 * 20 19 17 22 22 C 1.38811 * 120.00264 * 179.97438 * 20 19 17 23 23 N 1.31623 * 119.99818 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00163 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.46942 * 90.00018 * 24 22 20 26 26 H 1.48495 * 109.47079 * 210.00230 * 24 22 20 27 27 H 1.48503 * 109.46748 * 329.99837 * 24 22 20 28 28 C 1.47372 * 108.84036 * 114.49715 * 19 17 16 29 29 C 1.54921 * 112.33181 * 64.36278 * 13 12 10 30 30 H 1.09001 * 109.47063 * 269.90902 * 1 2 3 31 31 H 1.08998 * 109.47268 * 29.91049 * 1 2 3 32 32 H 1.08998 * 109.47151 * 149.91196 * 1 2 3 33 33 H 1.07997 * 119.99835 * 0.08442 * 3 2 1 34 34 H 1.07999 * 119.99733 * 180.10835 * 4 3 2 35 35 H 1.08001 * 119.99769 * 180.02562 * 5 4 3 36 36 H 1.09002 * 109.46961 * 269.97678 * 7 6 5 37 37 H 1.08993 * 109.47341 * 29.98207 * 7 6 5 38 38 H 1.09001 * 109.46864 * 149.98291 * 7 6 5 39 39 H 1.09003 * 109.46871 * 29.72827 * 9 8 2 40 40 H 1.09001 * 109.47017 * 149.72165 * 9 8 2 41 41 H 0.97001 * 119.99796 * 0.02562 * 12 10 9 42 42 H 1.09005 * 110.01476 * 358.12648 * 14 13 12 43 43 H 1.08998 * 110.02481 * 119.52240 * 14 13 12 44 44 H 1.09003 * 110.79921 * 216.92073 * 15 14 13 45 45 H 1.09001 * 110.09618 * 94.45552 * 15 14 13 46 46 H 1.08996 * 110.67695 * 278.89967 * 16 15 14 47 47 H 1.09003 * 110.66888 * 155.76174 * 16 15 14 48 48 H 0.97006 * 119.99903 * 180.02562 * 23 22 20 49 49 H 1.09004 * 110.36890 * 94.15262 * 28 19 17 50 50 H 1.08993 * 110.37248 * 216.36544 * 28 19 17 51 51 H 1.08996 * 110.96772 * 204.32931 * 29 13 12 52 52 H 1.08994 * 110.96785 * 328.09487 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2718 0.0001 -0.0008 6 6 3.5806 -1.1970 -0.0022 7 6 4.3342 -2.5021 -0.0031 8 6 2.1983 -1.1971 -0.0019 9 6 1.4448 -2.5022 -0.0097 10 6 1.1941 -2.9460 1.4083 11 8 1.5880 -2.2690 2.3343 12 7 0.5312 -4.0949 1.6477 13 6 0.2880 -4.5266 3.0264 14 6 1.5925 -4.7269 3.8117 15 6 1.5941 -6.1885 4.3025 16 6 0.0980 -6.5824 4.3404 17 6 -0.4873 -5.8686 3.0981 18 1 -0.3600 -6.4608 2.1919 19 7 -1.8988 -5.5392 3.3415 20 6 -2.9111 -6.4459 3.5095 21 1 -2.7005 -7.5043 3.4670 22 6 -4.2079 -6.0048 3.7345 23 7 -4.4646 -4.7148 3.7858 24 14 -5.5889 -7.2418 3.9630 25 1 -5.7184 -7.5785 5.4034 26 1 -6.8633 -6.6566 3.4748 27 1 -5.2825 -8.4736 3.1922 28 6 -2.0463 -4.0732 3.3762 29 6 -0.6356 -3.5488 3.7951 30 1 -0.3633 -0.0016 1.0277 31 1 -0.3634 0.8908 -0.5124 32 1 -0.3633 -0.8892 -0.5152 33 1 1.6582 2.1325 0.0014 34 1 4.1205 2.1325 0.0023 35 1 5.3518 0.0002 0.0000 36 1 4.5159 -2.8160 -1.0310 37 1 5.2865 -2.3722 0.5109 38 1 3.7450 -3.2621 0.5101 39 1 0.4922 -2.3687 -0.5225 40 1 2.0337 -3.2586 -0.5286 41 1 0.2158 -4.6362 0.9072 42 1 2.4497 -4.5363 3.1659 43 1 1.6168 -4.0580 4.6719 44 1 2.0335 -6.2622 5.2974 45 1 2.1372 -6.8193 3.5988 46 1 -0.3734 -6.2161 5.2523 47 1 -0.0177 -7.6628 4.2534 48 1 -5.3708 -4.4066 3.9433 49 1 -2.3285 -3.6969 2.3929 50 1 -2.7890 -3.7841 4.1197 51 1 -0.4719 -3.6216 4.8703 52 1 -0.4942 -2.5251 3.4489 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990935979.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:45 Heat of formation + Delta-G solvation = 5.165486 kcal Electronic energy + Delta-G solvation = -31267.538290 eV Core-core repulsion = 27424.797465 eV Total energy + Delta-G solvation = -3842.740825 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.47090 -39.54203 -37.83915 -34.24182 -33.61756 -33.42528 -33.23124 -31.39887 -29.89949 -28.75930 -26.82480 -26.70789 -26.67598 -25.56291 -23.85203 -21.85806 -20.72305 -20.67090 -20.00075 -19.34350 -18.73931 -17.02121 -16.77284 -16.27146 -16.23660 -15.63070 -14.95263 -14.63390 -14.51332 -14.23661 -14.01628 -13.62876 -13.50714 -13.24287 -13.02530 -12.96143 -12.92680 -12.82219 -12.72728 -12.36952 -12.16400 -11.80086 -11.68457 -11.64437 -11.46993 -11.13637 -10.99883 -10.92696 -10.86249 -10.83124 -10.67871 -10.52473 -10.14502 -10.05061 -9.93739 -9.70943 -9.61705 -9.33156 -8.66812 -8.55845 -8.53042 -8.48529 -6.86238 -5.65135 -3.08499 1.34129 1.38872 2.95037 3.38260 3.42296 3.44412 3.45424 3.83142 4.46679 4.59709 4.73876 4.85997 4.88290 4.93433 5.07383 5.18790 5.19386 5.24528 5.31308 5.34246 5.43092 5.50459 5.51609 5.61586 5.62706 5.66813 5.74528 5.78017 5.84031 5.88446 5.89835 6.01453 6.08982 6.12745 6.16880 6.22417 6.30730 6.36336 6.41411 6.47491 6.52844 6.56242 6.60597 6.67326 6.79316 6.79343 7.00524 7.02879 7.16640 7.54185 7.63881 7.85221 7.90842 8.36366 8.59171 9.20896 9.81916 10.46255 11.37059 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016455 B = 0.003079 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.212110 B = 9091.587011 C =10187.008108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.064 4.064 3 C -0.127 4.127 4 C -0.116 4.116 5 C -0.129 4.129 6 C -0.068 4.068 7 C -0.116 4.116 8 C -0.061 4.061 9 C -0.111 4.111 10 C 0.515 3.485 11 O -0.527 6.527 12 N -0.708 5.708 13 C 0.162 3.838 14 C -0.109 4.109 15 C -0.124 4.124 16 C -0.129 4.129 17 C 0.162 3.838 18 H 0.044 0.956 19 N -0.596 5.596 20 C -0.220 4.220 21 H 0.077 0.923 22 C -0.010 4.010 23 N -0.920 5.920 24 Si 0.913 3.087 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.154 3.846 29 C -0.141 4.141 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.398 0.602 42 H 0.058 0.942 43 H 0.067 0.933 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.073 0.927 47 H 0.057 0.943 48 H 0.251 0.749 49 H 0.011 0.989 50 H 0.106 0.894 51 H 0.067 0.933 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.978 6.420 -9.125 19.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.065 4.065 3 C -0.145 4.145 4 C -0.134 4.134 5 C -0.147 4.147 6 C -0.068 4.068 7 C -0.172 4.172 8 C -0.061 4.061 9 C -0.151 4.151 10 C 0.301 3.699 11 O -0.403 6.403 12 N -0.358 5.358 13 C 0.076 3.924 14 C -0.148 4.148 15 C -0.162 4.162 16 C -0.170 4.170 17 C 0.054 3.946 18 H 0.062 0.938 19 N -0.319 5.319 20 C -0.348 4.348 21 H 0.094 0.906 22 C -0.206 4.206 23 N -0.569 5.569 24 Si 0.743 3.257 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.208 1.208 28 C 0.029 3.971 29 C -0.181 4.181 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.232 0.768 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.092 0.908 47 H 0.076 0.924 48 H 0.062 0.938 49 H 0.029 0.971 50 H 0.124 0.876 51 H 0.086 0.914 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 15.988 6.911 -8.427 19.349 hybrid contribution -0.885 -0.827 -0.274 1.242 sum 15.102 6.083 -8.701 18.461 Atomic orbital electron populations 1.20892 0.91210 1.02539 1.03028 1.19715 0.95978 0.92528 0.98230 1.20933 0.94222 0.97266 1.02127 1.21040 0.94289 0.97754 1.00310 1.20900 0.99399 0.91993 1.02412 1.19657 0.92954 0.95360 0.98860 1.20817 0.99956 0.94584 1.01878 1.18952 0.92657 0.93208 1.01287 1.20789 1.02275 0.96181 0.95865 1.20289 0.78052 0.80836 0.90723 1.90706 1.50463 1.53655 1.45488 1.45939 1.57572 1.23769 1.08566 1.21614 0.94288 0.95724 0.80756 1.22223 0.96522 0.96527 0.99530 1.22349 0.97691 0.96017 1.00191 1.22913 0.93628 0.99884 1.00531 1.21780 0.85948 0.91528 0.95364 0.93819 1.44503 1.01213 1.02475 1.83753 1.19033 0.86250 0.88164 1.41373 0.90557 1.24779 0.97304 0.96142 1.02368 1.69807 1.19105 1.11580 1.56363 0.86105 0.81778 0.79978 0.77814 1.21637 1.21741 1.20803 1.22216 0.92610 0.82430 0.99837 1.23532 0.97848 0.97939 0.98759 0.90556 0.91633 0.91341 0.86306 0.86394 0.86419 0.91266 0.91551 0.91505 0.87859 0.88302 0.76804 0.92276 0.91437 0.92278 0.92498 0.90801 0.92373 0.93778 0.97093 0.87599 0.91429 0.91776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 9.61 36.01 0.35 -1.05 16 2 C -0.06 -0.82 5.88 -104.62 -0.62 -1.44 16 3 C -0.13 -1.48 9.70 -39.58 -0.38 -1.87 16 4 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 5 C -0.13 -1.44 9.70 -39.59 -0.38 -1.83 16 6 C -0.07 -0.82 5.88 -104.63 -0.62 -1.44 16 7 C -0.12 -1.15 9.19 36.01 0.33 -0.82 16 8 C -0.06 -0.78 4.37 -104.62 -0.46 -1.23 16 9 C -0.11 -1.30 4.74 -29.04 -0.14 -1.44 16 10 C 0.52 7.78 6.56 -10.99 -0.07 7.70 16 11 O -0.53 -9.75 13.91 5.55 0.08 -9.67 16 12 N -0.71 -10.84 5.23 -45.35 -0.24 -11.08 16 13 C 0.16 2.88 0.71 -129.37 -0.09 2.79 16 14 C -0.11 -1.78 5.25 -25.82 -0.14 -1.92 16 15 C -0.12 -1.86 6.82 -25.19 -0.17 -2.03 16 16 C -0.13 -2.32 6.26 -24.87 -0.16 -2.48 16 17 C 0.16 3.18 3.60 -65.60 -0.24 2.94 16 18 H 0.04 0.84 7.99 -51.93 -0.42 0.43 16 19 N -0.60 -14.44 3.07 -160.27 -0.49 -14.93 16 20 C -0.22 -5.86 10.03 -15.06 -0.15 -6.01 16 21 H 0.08 1.97 7.83 -52.48 -0.41 1.56 16 22 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 23 N -0.92 -26.35 10.07 55.49 0.56 -25.79 16 24 Si 0.91 21.68 29.55 -169.99 -5.02 16.66 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 C 0.15 3.71 5.96 -1.83 -0.01 3.70 16 29 C -0.14 -2.89 5.85 -23.99 -0.14 -3.03 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 32 H 0.07 0.74 5.94 -51.93 -0.31 0.43 16 33 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 38 H 0.07 0.72 6.37 -51.93 -0.33 0.39 16 39 H 0.10 1.08 5.94 -51.93 -0.31 0.77 16 40 H 0.10 0.93 6.72 -51.93 -0.35 0.58 16 41 H 0.40 5.37 8.50 -40.82 -0.35 5.02 16 42 H 0.06 0.95 7.40 -51.93 -0.38 0.56 16 43 H 0.07 1.16 7.41 -51.93 -0.38 0.78 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.07 1.48 8.11 -51.93 -0.42 1.06 16 47 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 48 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 49 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 50 H 0.11 2.92 5.82 -51.93 -0.30 2.61 16 51 H 0.07 1.40 7.65 -51.93 -0.40 1.00 16 52 H 0.06 1.34 6.82 -51.93 -0.35 0.98 16 LS Contribution 398.80 15.07 6.01 6.01 Total: -1.00 -31.24 398.80 -11.18 -42.42 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -8.49 Total: 7.88 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -3.58 Total: -11.50 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: -0.17 Total: -51.80 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.08 Total: -9.67 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.24 -11.18 -42.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990935979.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.583 kcal (2) G-P(sol) polarization free energy of solvation -31.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds