Wall clock time and date at job start Wed Apr 1 2020 02:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38238 * 119.99934 * 2 1 4 4 C 1.38244 * 119.99948 * 180.22826 * 3 2 1 5 5 C 1.38231 * 119.99845 * 359.80082 * 4 3 2 6 6 C 1.38234 * 120.00254 * 0.02562 * 5 4 3 7 7 C 1.50699 * 120.00403 * 179.97438 * 6 5 4 8 8 C 1.38234 * 120.00274 * 179.79908 * 2 1 3 9 9 C 1.50703 * 120.00019 * 0.02562 * 8 2 1 10 10 C 1.50701 * 109.47086 * 269.72757 * 9 8 2 11 11 O 1.21281 * 119.99913 * 359.97438 * 10 9 8 12 12 N 1.34771 * 119.99935 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00294 * 180.02562 * 12 10 9 14 14 C 1.53579 * 112.24509 * 62.34604 * 13 12 10 15 15 C 1.54224 * 106.67544 * 121.76008 * 14 13 12 16 16 C 1.54759 * 104.15350 * 24.94436 * 15 14 13 17 17 C 1.55160 * 112.18904 * 183.38368 * 13 12 10 18 18 H 1.08999 * 112.04263 * 337.23089 * 17 13 12 19 19 N 1.46986 * 107.06736 * 100.16237 * 17 13 12 20 20 C 1.36929 * 125.57872 * 177.86674 * 19 17 13 21 21 H 1.08004 * 120.00341 * 359.97438 * 20 19 17 22 22 C 1.38815 * 120.00031 * 179.71466 * 20 19 17 23 23 N 1.31617 * 119.99916 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99958 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47228 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46793 * 120.00365 * 24 22 20 27 27 H 1.48500 * 109.47000 * 240.00457 * 24 22 20 28 28 C 1.47366 * 108.83964 * 357.60359 * 19 17 13 29 29 C 1.54872 * 104.82404 * 24.94983 * 28 19 17 30 30 H 1.09000 * 109.47414 * 270.19792 * 1 2 3 31 31 H 1.09004 * 109.47143 * 30.20134 * 1 2 3 32 32 H 1.09002 * 109.46638 * 150.19316 * 1 2 3 33 33 H 1.08002 * 120.00291 * 0.02562 * 3 2 1 34 34 H 1.07993 * 119.99853 * 179.78692 * 4 3 2 35 35 H 1.07996 * 120.00004 * 179.97438 * 5 4 3 36 36 H 1.09000 * 109.47491 * 269.98464 * 7 6 5 37 37 H 1.09005 * 109.46354 * 29.97858 * 7 6 5 38 38 H 1.09001 * 109.47629 * 149.97524 * 7 6 5 39 39 H 1.08994 * 109.47455 * 149.72301 * 9 8 2 40 40 H 1.09001 * 109.46910 * 29.72400 * 9 8 2 41 41 H 0.97001 * 120.00515 * 359.97438 * 12 10 9 42 42 H 1.09003 * 110.02202 * 241.06870 * 14 13 12 43 43 H 1.09003 * 110.02002 * 2.41560 * 14 13 12 44 44 H 1.09002 * 110.49183 * 143.60431 * 15 14 13 45 45 H 1.08993 * 110.49813 * 266.13928 * 15 14 13 46 46 H 1.09004 * 110.67206 * 80.62237 * 16 15 14 47 47 H 1.09006 * 110.66617 * 203.58705 * 16 15 14 48 48 H 0.97000 * 120.00284 * 179.97438 * 23 22 20 49 49 H 1.09000 * 110.36987 * 143.78501 * 28 19 17 50 50 H 1.09002 * 110.36796 * 266.11474 * 28 19 17 51 51 H 1.08998 * 110.96695 * 81.05080 * 29 28 19 52 52 H 1.09001 * 110.96393 * 204.81021 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5806 1.1972 -0.0048 5 6 4.2717 0.0001 -0.0054 6 6 3.5806 -1.1971 -0.0018 7 6 4.3340 -2.5022 -0.0030 8 6 2.1982 -1.1971 0.0042 9 6 1.4447 -2.5023 0.0082 10 6 1.1989 -2.9360 1.4303 11 8 1.5968 -2.2528 2.3501 12 7 0.5369 -4.0831 1.6801 13 6 0.2974 -4.5045 3.0626 14 6 -0.5760 -3.5031 3.8327 15 6 -1.8150 -4.2806 4.3212 16 6 -1.3353 -5.7502 4.3935 17 6 -0.4031 -5.8868 3.1408 18 1 -0.9437 -6.1239 2.2245 19 7 0.6381 -6.8821 3.4337 20 6 0.4287 -8.2218 3.6236 21 1 -0.5710 -8.6262 3.5627 22 6 1.5018 -9.0613 3.8893 23 7 2.7206 -8.5694 3.9591 24 14 1.2161 -10.8892 4.1477 25 1 -0.2328 -11.1869 4.0181 26 1 1.9723 -11.6576 3.1264 27 1 1.6820 -11.2761 5.5036 28 6 1.9451 -6.2030 3.4831 29 6 1.6148 -4.7338 3.8447 30 1 -0.3634 0.0035 1.0276 31 1 -0.3634 0.8882 -0.5170 32 1 -0.3633 -0.8918 -0.5109 33 1 1.6582 2.1325 0.0004 34 1 4.1205 2.1325 -0.0082 35 1 5.3516 0.0000 -0.0095 36 1 4.5119 -2.8181 -1.0309 37 1 5.2884 -2.3712 0.5071 38 1 3.7469 -3.2613 0.5140 39 1 2.0318 -3.2623 -0.5072 40 1 0.4904 -2.3724 -0.5022 41 1 0.2183 -4.6293 0.9445 42 1 -0.0249 -3.1056 4.6850 43 1 -0.8809 -2.6900 3.1738 44 1 -2.1212 -3.9303 5.3069 45 1 -2.6344 -4.1791 3.6097 46 1 -0.7776 -5.9282 5.3130 47 1 -2.1802 -6.4349 4.3189 48 1 3.4705 -9.1559 4.1451 49 1 2.5761 -6.6501 4.2513 50 1 2.4358 -6.2534 2.5111 51 1 1.4562 -4.6223 4.9173 52 1 2.3980 -4.0608 3.4956 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990935982.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:49 Heat of formation + Delta-G solvation = 5.568922 kcal Electronic energy + Delta-G solvation = -31279.428183 eV Core-core repulsion = 27436.704852 eV Total energy + Delta-G solvation = -3842.723331 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.46556 -39.52654 -37.81350 -34.25136 -33.61554 -33.41015 -33.20674 -31.42656 -29.88717 -28.76601 -26.83099 -26.67890 -26.66434 -25.58915 -23.83096 -21.85056 -20.71682 -20.67185 -19.96274 -19.35981 -18.75409 -17.01320 -16.77537 -16.28745 -16.21524 -15.61176 -14.93432 -14.62799 -14.51822 -14.26656 -13.97194 -13.64372 -13.52366 -13.23074 -13.01831 -12.97110 -12.91910 -12.84999 -12.70002 -12.36170 -12.15416 -11.81138 -11.70335 -11.58987 -11.47941 -11.13804 -10.99890 -10.90573 -10.85337 -10.84705 -10.66321 -10.51315 -10.12430 -10.04456 -9.94326 -9.72519 -9.62193 -9.30716 -8.66162 -8.55724 -8.52416 -8.48664 -6.85345 -5.65067 -3.08232 1.34587 1.39078 2.95379 3.38019 3.42395 3.44643 3.46296 3.83460 4.46847 4.59506 4.74607 4.86864 4.88892 4.92404 5.05849 5.16889 5.20091 5.26044 5.34066 5.35958 5.40061 5.51742 5.58581 5.62084 5.64546 5.65454 5.66288 5.80110 5.84594 5.87842 5.89651 6.01326 6.07608 6.13676 6.16724 6.22494 6.30500 6.34924 6.43536 6.47846 6.53366 6.55888 6.62110 6.67583 6.79883 6.81878 7.01411 7.03237 7.16787 7.55115 7.64878 7.85295 7.91198 8.36685 8.59386 9.21147 9.82240 10.46464 11.37354 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016168 B = 0.003108 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.409057 B = 9005.609166 C =10141.363160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.069 4.069 3 C -0.129 4.129 4 C -0.116 4.116 5 C -0.127 4.127 6 C -0.064 4.064 7 C -0.119 4.119 8 C -0.061 4.061 9 C -0.112 4.112 10 C 0.515 3.485 11 O -0.527 6.527 12 N -0.709 5.709 13 C 0.162 3.838 14 C -0.109 4.109 15 C -0.124 4.124 16 C -0.129 4.129 17 C 0.162 3.838 18 H 0.048 0.952 19 N -0.595 5.595 20 C -0.219 4.219 21 H 0.077 0.923 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.912 3.088 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.291 1.291 28 C 0.153 3.847 29 C -0.142 4.142 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.397 0.603 42 H 0.068 0.932 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.073 0.927 47 H 0.056 0.944 48 H 0.251 0.749 49 H 0.107 0.893 50 H 0.008 0.992 51 H 0.065 0.935 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.238 16.745 -9.534 19.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.069 4.069 3 C -0.147 4.147 4 C -0.134 4.134 5 C -0.145 4.145 6 C -0.064 4.064 7 C -0.176 4.176 8 C -0.061 4.061 9 C -0.151 4.151 10 C 0.301 3.699 11 O -0.403 6.403 12 N -0.359 5.359 13 C 0.076 3.924 14 C -0.148 4.148 15 C -0.162 4.162 16 C -0.169 4.169 17 C 0.053 3.947 18 H 0.066 0.934 19 N -0.319 5.319 20 C -0.348 4.348 21 H 0.095 0.905 22 C -0.206 4.206 23 N -0.568 5.568 24 Si 0.743 3.257 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.218 1.218 28 C 0.029 3.971 29 C -0.181 4.181 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.231 0.769 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.092 0.908 47 H 0.075 0.925 48 H 0.062 0.938 49 H 0.125 0.875 50 H 0.026 0.974 51 H 0.084 0.916 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.805 17.013 -8.820 19.368 hybrid contribution -0.194 -1.190 -0.275 1.236 sum -2.998 15.824 -9.095 18.496 Atomic orbital electron populations 1.20856 0.91540 1.02371 1.02605 1.19652 0.95769 0.92565 0.98898 1.20898 0.94239 0.97135 1.02407 1.21040 0.94280 0.97762 1.00320 1.20938 0.99548 0.91961 1.02083 1.19719 0.92988 0.95494 0.98226 1.20854 1.00215 0.94456 1.02038 1.18953 0.92736 0.93139 1.01268 1.20791 1.02112 0.96385 0.95829 1.20287 0.77936 0.80983 0.90696 1.90703 1.49826 1.53667 1.46057 1.45950 1.57961 1.23453 1.08540 1.21647 0.96580 0.93591 0.80617 1.22251 0.95895 0.97037 0.99629 1.22346 0.97041 0.96667 1.00195 1.23249 0.99185 0.94082 1.00393 1.22167 0.90401 0.87047 0.95076 0.93417 1.44526 1.01590 1.03188 1.82597 1.19077 0.93497 0.81528 1.40659 0.90490 1.24782 0.95309 0.98180 1.02348 1.69818 0.98029 1.33014 1.55937 0.86035 0.77248 0.84994 0.77430 1.20569 1.21861 1.21792 1.21960 0.88492 0.86455 1.00229 1.23322 0.95880 1.00177 0.98750 0.90910 0.91727 0.91484 0.86421 0.86394 0.86305 0.91162 0.91367 0.91187 0.88058 0.88124 0.76853 0.91322 0.92468 0.92348 0.92410 0.90798 0.92504 0.93832 0.87538 0.97407 0.91598 0.91376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 9.60 36.00 0.35 -0.81 16 2 C -0.07 -0.83 5.88 -104.63 -0.62 -1.44 16 3 C -0.13 -1.44 9.70 -39.58 -0.38 -1.83 16 4 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 5 C -0.13 -1.49 9.70 -39.59 -0.38 -1.88 16 6 C -0.06 -0.82 5.88 -104.62 -0.62 -1.44 16 7 C -0.12 -1.40 9.19 36.01 0.33 -1.07 16 8 C -0.06 -0.78 4.37 -104.62 -0.46 -1.24 16 9 C -0.11 -1.31 4.75 -29.03 -0.14 -1.44 16 10 C 0.52 7.79 6.62 -10.99 -0.07 7.72 16 11 O -0.53 -9.77 13.85 5.56 0.08 -9.70 16 12 N -0.71 -10.81 5.22 -45.35 -0.24 -11.05 16 13 C 0.16 2.87 0.74 -129.36 -0.10 2.77 16 14 C -0.11 -1.77 5.30 -25.79 -0.14 -1.91 16 15 C -0.12 -1.85 6.84 -25.16 -0.17 -2.02 16 16 C -0.13 -2.31 6.30 -23.78 -0.15 -2.46 16 17 C 0.16 3.16 3.78 -64.50 -0.24 2.92 16 18 H 0.05 0.91 7.95 -51.93 -0.41 0.50 16 19 N -0.60 -14.46 3.04 -159.90 -0.49 -14.95 16 20 C -0.22 -5.85 10.04 -15.06 -0.15 -6.01 16 21 H 0.08 2.00 7.83 -52.48 -0.41 1.58 16 22 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 23 N -0.92 -26.42 10.07 55.49 0.56 -25.86 16 24 Si 0.91 21.71 29.55 -169.99 -5.02 16.69 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 C 0.15 3.72 5.90 -2.58 -0.02 3.70 16 29 C -0.14 -2.92 5.71 -24.73 -0.14 -3.06 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 32 H 0.07 0.59 5.94 -51.93 -0.31 0.28 16 33 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 38 H 0.07 0.94 6.37 -51.93 -0.33 0.60 16 39 H 0.10 1.07 6.70 -51.93 -0.35 0.72 16 40 H 0.10 0.94 5.94 -51.93 -0.31 0.63 16 41 H 0.40 5.29 8.47 -40.82 -0.35 4.94 16 42 H 0.07 1.18 7.38 -51.93 -0.38 0.80 16 43 H 0.06 0.90 7.60 -51.93 -0.39 0.51 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.07 1.48 8.11 -51.93 -0.42 1.06 16 47 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 49 H 0.11 2.95 5.82 -51.93 -0.30 2.65 16 50 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 51 H 0.07 1.37 7.63 -51.93 -0.40 0.98 16 52 H 0.07 1.44 6.53 -51.93 -0.34 1.10 16 LS Contribution 398.67 15.07 6.01 6.01 Total: -1.00 -31.39 398.67 -11.17 -42.57 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -8.48 Total: 7.84 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -3.59 Total: -11.55 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: -0.16 Total: -51.85 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.08 Total: -9.70 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.39 -11.17 -42.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990935982.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.136 kcal (2) G-P(sol) polarization free energy of solvation -31.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds