Wall clock time and date at job start Wed Apr 1 2020 02:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38238 * 119.99934 * 2 1 4 4 C 1.38244 * 119.99948 * 180.22826 * 3 2 1 5 5 C 1.38231 * 119.99845 * 359.80082 * 4 3 2 6 6 C 1.38234 * 120.00254 * 0.02562 * 5 4 3 7 7 C 1.50699 * 120.00403 * 179.97438 * 6 5 4 8 8 C 1.38234 * 120.00274 * 179.79908 * 2 1 3 9 9 C 1.50703 * 120.00019 * 0.02562 * 8 2 1 10 10 C 1.50701 * 109.47086 * 269.72757 * 9 8 2 11 11 O 1.21281 * 119.99913 * 359.97438 * 10 9 8 12 12 N 1.34771 * 119.99935 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00294 * 180.02562 * 12 10 9 14 14 C 1.53579 * 112.24509 * 62.34604 * 13 12 10 15 15 C 1.54224 * 106.67544 * 121.76008 * 14 13 12 16 16 C 1.54759 * 104.15350 * 24.94436 * 15 14 13 17 17 C 1.55160 * 112.18904 * 183.38368 * 13 12 10 18 18 H 1.08999 * 112.04263 * 337.23089 * 17 13 12 19 19 N 1.46986 * 107.06736 * 100.16237 * 17 13 12 20 20 C 1.36929 * 125.57872 * 177.86674 * 19 17 13 21 21 H 1.08004 * 120.00341 * 359.97438 * 20 19 17 22 22 C 1.38815 * 120.00031 * 179.71466 * 20 19 17 23 23 N 1.31617 * 119.99916 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99958 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47228 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46793 * 120.00365 * 24 22 20 27 27 H 1.48500 * 109.47000 * 240.00457 * 24 22 20 28 28 C 1.47366 * 108.83964 * 357.60359 * 19 17 13 29 29 C 1.54872 * 104.82404 * 24.94983 * 28 19 17 30 30 H 1.09000 * 109.47414 * 270.19792 * 1 2 3 31 31 H 1.09004 * 109.47143 * 30.20134 * 1 2 3 32 32 H 1.09002 * 109.46638 * 150.19316 * 1 2 3 33 33 H 1.08002 * 120.00291 * 0.02562 * 3 2 1 34 34 H 1.07993 * 119.99853 * 179.78692 * 4 3 2 35 35 H 1.07996 * 120.00004 * 179.97438 * 5 4 3 36 36 H 1.09000 * 109.47491 * 269.98464 * 7 6 5 37 37 H 1.09005 * 109.46354 * 29.97858 * 7 6 5 38 38 H 1.09001 * 109.47629 * 149.97524 * 7 6 5 39 39 H 1.08994 * 109.47455 * 149.72301 * 9 8 2 40 40 H 1.09001 * 109.46910 * 29.72400 * 9 8 2 41 41 H 0.97001 * 120.00515 * 359.97438 * 12 10 9 42 42 H 1.09003 * 110.02202 * 241.06870 * 14 13 12 43 43 H 1.09003 * 110.02002 * 2.41560 * 14 13 12 44 44 H 1.09002 * 110.49183 * 143.60431 * 15 14 13 45 45 H 1.08993 * 110.49813 * 266.13928 * 15 14 13 46 46 H 1.09004 * 110.67206 * 80.62237 * 16 15 14 47 47 H 1.09006 * 110.66617 * 203.58705 * 16 15 14 48 48 H 0.97000 * 120.00284 * 179.97438 * 23 22 20 49 49 H 1.09000 * 110.36987 * 143.78501 * 28 19 17 50 50 H 1.09002 * 110.36796 * 266.11474 * 28 19 17 51 51 H 1.08998 * 110.96695 * 81.05080 * 29 28 19 52 52 H 1.09001 * 110.96393 * 204.81021 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5806 1.1972 -0.0048 5 6 4.2717 0.0001 -0.0054 6 6 3.5806 -1.1971 -0.0018 7 6 4.3340 -2.5022 -0.0030 8 6 2.1982 -1.1971 0.0042 9 6 1.4447 -2.5023 0.0082 10 6 1.1989 -2.9360 1.4303 11 8 1.5968 -2.2528 2.3501 12 7 0.5369 -4.0831 1.6801 13 6 0.2974 -4.5045 3.0626 14 6 -0.5760 -3.5031 3.8327 15 6 -1.8150 -4.2806 4.3212 16 6 -1.3353 -5.7502 4.3935 17 6 -0.4031 -5.8868 3.1408 18 1 -0.9437 -6.1239 2.2245 19 7 0.6381 -6.8821 3.4337 20 6 0.4287 -8.2218 3.6236 21 1 -0.5710 -8.6262 3.5627 22 6 1.5018 -9.0613 3.8893 23 7 2.7206 -8.5694 3.9591 24 14 1.2161 -10.8892 4.1477 25 1 -0.2328 -11.1869 4.0181 26 1 1.9723 -11.6576 3.1264 27 1 1.6820 -11.2761 5.5036 28 6 1.9451 -6.2030 3.4831 29 6 1.6148 -4.7338 3.8447 30 1 -0.3634 0.0035 1.0276 31 1 -0.3634 0.8882 -0.5170 32 1 -0.3633 -0.8918 -0.5109 33 1 1.6582 2.1325 0.0004 34 1 4.1205 2.1325 -0.0082 35 1 5.3516 0.0000 -0.0095 36 1 4.5119 -2.8181 -1.0309 37 1 5.2884 -2.3712 0.5071 38 1 3.7469 -3.2613 0.5140 39 1 2.0318 -3.2623 -0.5072 40 1 0.4904 -2.3724 -0.5022 41 1 0.2183 -4.6293 0.9445 42 1 -0.0249 -3.1056 4.6850 43 1 -0.8809 -2.6900 3.1738 44 1 -2.1212 -3.9303 5.3069 45 1 -2.6344 -4.1791 3.6097 46 1 -0.7776 -5.9282 5.3130 47 1 -2.1802 -6.4349 4.3189 48 1 3.4705 -9.1559 4.1451 49 1 2.5761 -6.6501 4.2513 50 1 2.4358 -6.2534 2.5111 51 1 1.4562 -4.6223 4.9173 52 1 2.3980 -4.0608 3.4956 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990935982.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:47 Heat of formation + Delta-G solvation = -10.880123 kcal Electronic energy + Delta-G solvation = -31280.141467 eV Core-core repulsion = 27436.704852 eV Total energy + Delta-G solvation = -3843.436615 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.70024 -40.65908 -39.14008 -36.02863 -34.66721 -34.46002 -34.20524 -33.29583 -31.52144 -29.80339 -28.37432 -27.92482 -27.50658 -26.87563 -25.71749 -23.07853 -22.02941 -21.57456 -21.48491 -20.69672 -20.17039 -18.87931 -18.05405 -17.32671 -17.17907 -16.88475 -16.77322 -15.96943 -15.66071 -15.49985 -15.27621 -15.04982 -14.84822 -14.53400 -14.30294 -14.05865 -13.86138 -13.81974 -13.78123 -13.57061 -13.53292 -13.27821 -13.07280 -12.91893 -12.79488 -12.66058 -12.48349 -12.37825 -12.29714 -11.98104 -11.87650 -11.75485 -11.71039 -11.68057 -11.55115 -11.45908 -11.24314 -10.72680 -10.67787 -9.88479 -9.45562 -9.38980 -8.85057 -7.72937 -5.17656 0.46007 0.51924 1.48117 1.48698 1.58688 1.76105 2.26230 2.51767 2.89908 3.36531 3.41416 3.65304 3.69797 3.90489 3.96735 3.98339 4.01768 4.11618 4.15032 4.23304 4.35647 4.42223 4.43921 4.48022 4.49110 4.59300 4.60048 4.68222 4.73323 4.79803 4.80619 4.83376 4.86885 4.92608 4.97825 5.00073 5.03984 5.09631 5.19040 5.23799 5.30223 5.33311 5.37928 5.49189 5.52727 5.62875 5.65573 5.67848 5.74688 5.79260 5.85909 6.19413 6.31715 6.68853 7.12869 7.39235 7.81507 8.45626 9.28486 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016168 B = 0.003108 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.409057 B = 9005.609166 C =10141.363160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.082 4.082 3 C -0.138 4.138 4 C -0.120 4.120 5 C -0.141 4.141 6 C -0.085 4.085 7 C -0.116 4.116 8 C -0.081 4.081 9 C -0.103 4.103 10 C 0.518 3.482 11 O -0.562 6.562 12 N -0.706 5.706 13 C 0.173 3.827 14 C -0.103 4.103 15 C -0.109 4.109 16 C -0.125 4.125 17 C 0.153 3.847 18 H 0.063 0.937 19 N -0.611 5.611 20 C -0.221 4.221 21 H 0.086 0.914 22 C -0.070 4.070 23 N -0.951 5.951 24 Si 0.976 3.024 25 H -0.263 1.263 26 H -0.296 1.296 27 H -0.297 1.297 28 C 0.165 3.835 29 C -0.130 4.130 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.132 0.868 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.048 0.952 39 H 0.111 0.889 40 H 0.129 0.871 41 H 0.409 0.591 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.046 0.954 47 H 0.066 0.934 48 H 0.243 0.757 49 H 0.068 0.932 50 H -0.017 1.017 51 H 0.059 0.941 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.632 18.101 -10.825 21.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.082 4.082 3 C -0.156 4.156 4 C -0.138 4.138 5 C -0.159 4.159 6 C -0.086 4.086 7 C -0.172 4.172 8 C -0.082 4.082 9 C -0.142 4.142 10 C 0.305 3.695 11 O -0.441 6.441 12 N -0.357 5.357 13 C 0.086 3.914 14 C -0.142 4.142 15 C -0.147 4.147 16 C -0.165 4.165 17 C 0.047 3.953 18 H 0.081 0.919 19 N -0.335 5.335 20 C -0.350 4.350 21 H 0.104 0.896 22 C -0.262 4.262 23 N -0.602 5.602 24 Si 0.805 3.195 25 H -0.188 1.188 26 H -0.223 1.223 27 H -0.224 1.224 28 C 0.040 3.960 29 C -0.169 4.169 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.150 0.850 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.129 0.871 40 H 0.147 0.853 41 H 0.245 0.755 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.102 0.898 46 H 0.065 0.935 47 H 0.084 0.916 48 H 0.053 0.947 49 H 0.086 0.914 50 H 0.001 0.999 51 H 0.077 0.923 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.248 18.382 -10.138 21.638 hybrid contribution 0.593 -1.550 0.120 1.664 sum -4.654 16.832 -10.019 20.133 Atomic orbital electron populations 1.20878 0.90065 1.03927 1.02273 1.20003 0.97072 0.92579 0.98533 1.21258 0.94611 0.97887 1.01837 1.21389 0.94602 0.98474 0.99345 1.21207 1.00470 0.92063 1.02190 1.19959 0.93517 0.96076 0.98999 1.20821 0.99751 0.93802 1.02836 1.19157 0.92958 0.93864 1.02198 1.20779 1.03682 0.96305 0.93442 1.20846 0.76663 0.80158 0.91821 1.90687 1.51093 1.54735 1.47541 1.45897 1.58187 1.23805 1.07815 1.21428 0.94602 0.93482 0.81862 1.22174 0.96019 0.96893 0.99084 1.22286 0.96848 0.93634 1.01944 1.23114 0.98647 0.96767 0.97953 1.22439 0.89913 0.86622 0.96374 0.91948 1.44707 1.02648 1.03433 1.82675 1.19445 0.93713 0.82738 1.39151 0.89628 1.25588 0.95246 1.02216 1.03197 1.70077 0.98655 1.33921 1.57526 0.85032 0.77787 0.80179 0.76497 1.18772 1.22333 1.22437 1.21588 0.88383 0.88521 0.97542 1.23109 0.97642 0.97329 0.98843 0.92004 0.89801 0.90401 0.84293 0.84047 0.84997 0.89419 0.91346 0.93291 0.87077 0.85283 0.75525 0.92580 0.91368 0.90635 0.89757 0.93536 0.91568 0.94686 0.91354 0.99913 0.92272 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.98 9.60 71.23 0.68 -1.29 16 2 C -0.08 -1.83 5.88 -19.87 -0.12 -1.95 16 3 C -0.14 -2.83 9.70 22.27 0.22 -2.61 16 4 C -0.12 -2.44 10.05 22.27 0.22 -2.22 16 5 C -0.14 -3.20 9.70 22.27 0.22 -2.98 16 6 C -0.09 -2.16 5.88 -19.87 -0.12 -2.27 16 7 C -0.12 -2.75 9.19 71.24 0.65 -2.09 16 8 C -0.08 -2.01 4.37 -19.86 -0.09 -2.09 16 9 C -0.10 -2.26 4.75 29.10 0.14 -2.12 16 10 C 0.52 15.20 6.62 87.66 0.58 15.78 16 11 O -0.56 -20.78 13.85 -3.03 -0.04 -20.83 16 12 N -0.71 -20.73 5.22 -415.77 -2.17 -22.90 16 13 C 0.17 6.01 0.74 5.19 0.00 6.02 16 14 C -0.10 -3.14 5.30 31.20 0.17 -2.97 16 15 C -0.11 -2.90 6.84 31.61 0.22 -2.68 16 16 C -0.12 -4.26 6.30 32.50 0.20 -4.06 16 17 C 0.15 5.85 3.78 46.95 0.18 6.03 16 18 H 0.06 2.24 7.95 -2.39 -0.02 2.22 16 19 N -0.61 -30.10 3.04 -659.80 -2.01 -32.11 16 20 C -0.22 -11.90 10.04 84.04 0.84 -11.05 16 21 H 0.09 4.36 7.83 -2.91 -0.02 4.34 16 22 C -0.07 -3.94 5.49 84.86 0.47 -3.47 16 23 N -0.95 -56.92 10.07 21.65 0.22 -56.71 16 24 Si 0.98 45.25 29.55 68.60 2.03 47.28 16 25 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 26 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 27 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 28 C 0.16 8.38 5.90 86.85 0.51 8.89 16 29 C -0.13 -5.52 5.71 31.89 0.18 -5.33 16 30 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.08 1.09 8.09 -2.38 -0.02 1.07 16 32 H 0.08 1.12 5.94 -2.39 -0.01 1.11 16 33 H 0.14 2.14 8.06 -2.91 -0.02 2.11 16 34 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 35 H 0.13 2.48 8.06 -2.91 -0.02 2.45 16 36 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.07 1.56 8.09 -2.38 -0.02 1.54 16 38 H 0.05 1.35 6.37 -2.39 -0.02 1.33 16 39 H 0.11 2.22 6.70 -2.39 -0.02 2.20 16 40 H 0.13 2.05 5.94 -2.39 -0.01 2.03 16 41 H 0.41 10.17 8.47 -92.71 -0.78 9.39 16 42 H 0.06 1.86 7.38 -2.39 -0.02 1.85 16 43 H 0.07 1.96 7.60 -2.39 -0.02 1.94 16 44 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.08 1.86 8.14 -2.39 -0.02 1.85 16 46 H 0.05 1.84 8.11 -2.38 -0.02 1.82 16 47 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 48 H 0.24 14.26 8.31 -92.71 -0.77 13.48 16 49 H 0.07 4.03 5.82 -2.39 -0.01 4.01 16 50 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 51 H 0.06 2.56 7.63 -2.39 -0.02 2.54 16 52 H 0.06 2.63 6.53 -2.39 -0.02 2.62 16 Total: -1.00 -70.30 398.67 3.33 -66.97 By element: Atomic # 1 Polarization: 30.64 SS G_CDS: 0.14 Total: 30.78 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: 5.16 Total: -12.49 kcal Atomic # 7 Polarization: -107.75 SS G_CDS: -3.96 Total: -111.71 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.04 Total: -20.83 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -70.30 3.33 -66.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990935982.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.092 kcal (2) G-P(sol) polarization free energy of solvation -70.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds