Wall clock time and date at job start Wed Apr 1 2020 03:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47017 * 2 1 4 4 C 1.38255 * 120.00153 * 265.20850 * 3 2 1 5 5 C 1.38210 * 119.99695 * 180.23079 * 4 3 2 6 6 C 1.38261 * 120.00280 * 359.81616 * 5 4 3 7 7 C 1.38209 * 119.99615 * 359.97438 * 6 5 4 8 8 C 1.38217 * 119.99367 * 85.00241 * 3 2 1 9 9 C 1.50697 * 120.00628 * 359.97438 * 8 3 2 10 10 C 1.50704 * 109.46632 * 84.72668 * 9 8 3 11 11 O 1.21282 * 120.00164 * 0.02562 * 10 9 8 12 12 N 1.34782 * 119.99698 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99806 * 180.02562 * 12 10 9 14 14 C 1.51229 * 111.06634 * 281.62167 * 13 12 10 15 15 C 1.55693 * 104.60481 * 275.45803 * 14 13 12 16 16 C 1.56280 * 105.93759 * 352.75280 * 15 14 13 17 17 C 1.50874 * 102.24372 * 336.01087 * 16 15 14 18 18 H 1.08996 * 107.58020 * 292.61533 * 17 16 15 19 19 N 1.42704 * 128.63540 * 160.38423 * 17 16 15 20 20 C 1.36939 * 127.10149 * 28.57618 * 19 17 16 21 21 H 1.07997 * 119.99728 * 359.43258 * 20 19 17 22 22 C 1.38815 * 119.99845 * 179.71172 * 20 19 17 23 23 N 1.31619 * 119.99884 * 359.72042 * 22 20 19 24 24 Si 1.86798 * 119.99660 * 179.72678 * 22 20 19 25 25 H 1.48498 * 109.47416 * 59.99578 * 24 22 20 26 26 H 1.48508 * 109.46609 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.46903 * 299.99163 * 24 22 20 28 28 C 1.49296 * 105.79439 * 208.31565 * 19 17 16 29 29 C 1.52127 * 111.08685 * 61.01552 * 13 12 10 30 30 H 1.09002 * 109.47539 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47583 * 299.99844 * 1 2 3 32 32 H 1.09000 * 109.47077 * 59.99821 * 1 2 3 33 33 H 1.08998 * 109.46906 * 240.00185 * 2 1 3 34 34 H 1.09000 * 109.47077 * 120.00179 * 2 1 3 35 35 H 1.07995 * 119.99872 * 0.06771 * 4 3 2 36 36 H 1.07995 * 119.99903 * 179.83296 * 5 4 3 37 37 H 1.08000 * 120.00012 * 179.97438 * 6 5 4 38 38 H 1.08007 * 120.00062 * 179.97438 * 7 6 5 39 39 H 1.09000 * 109.46967 * 324.73421 * 9 8 3 40 40 H 1.08990 * 109.47446 * 204.72806 * 9 8 3 41 41 H 0.97001 * 120.00263 * 0.02562 * 12 10 9 42 42 H 1.08994 * 110.40961 * 34.23957 * 14 13 12 43 43 H 1.09000 * 110.40975 * 156.56119 * 14 13 12 44 44 H 1.09009 * 110.15752 * 111.86536 * 15 14 13 45 45 H 1.08999 * 110.16140 * 233.56137 * 15 14 13 46 46 H 1.09004 * 110.97135 * 93.85526 * 16 15 14 47 47 H 1.09004 * 110.97456 * 217.58561 * 16 15 14 48 48 H 0.97000 * 119.99517 * 180.02562 * 23 22 20 49 49 H 1.09006 * 110.04750 * 128.16639 * 28 19 17 50 50 H 1.08996 * 110.05013 * 249.63802 * 28 19 17 51 51 H 1.09001 * 111.15090 * 316.07010 * 29 13 12 52 52 H 1.08998 * 111.15242 * 191.84389 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3570 2.0393 -1.1931 5 6 2.8222 3.3407 -1.1926 6 6 2.9593 4.0255 0.0007 7 6 2.6305 3.4086 1.1930 8 6 2.1643 2.1070 1.1925 9 6 1.8054 1.4347 2.4926 10 6 2.9821 0.6318 2.9844 11 8 4.0110 0.6083 2.3426 12 7 2.8911 -0.0601 4.1374 13 6 4.0352 -0.8402 4.6158 14 6 4.1506 -2.1500 3.8688 15 6 3.1875 -3.1161 4.6193 16 6 2.7061 -2.3418 5.8886 17 6 3.8187 -1.3440 6.0958 18 1 4.7117 -1.9009 6.3794 19 7 3.7971 -0.1276 6.8416 20 6 3.0204 0.1589 7.9324 21 1 2.3241 -0.5764 8.3076 22 6 3.1240 1.3966 8.5524 23 7 3.9726 2.2927 8.0951 24 14 2.0590 1.7901 10.0358 25 1 2.3455 0.8194 11.1224 26 1 2.3587 3.1653 10.5094 27 1 0.6265 1.6984 9.6549 28 6 4.8007 0.7659 6.1910 29 6 5.2391 0.0541 4.8711 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.2497 1.5045 -2.1252 36 1 3.0784 3.8229 -2.1244 37 1 3.3232 5.0423 0.0011 38 1 2.7379 3.9433 2.1252 39 1 0.9538 0.7726 2.3362 40 1 1.5465 2.1910 3.2334 41 1 2.0681 -0.0416 4.6505 42 1 3.8339 -2.0262 2.8333 43 1 5.1741 -2.5225 3.9105 44 1 2.3361 -3.3649 3.9857 45 1 3.7169 -4.0235 4.9098 46 1 1.7635 -1.8286 5.6983 47 1 2.6176 -3.0116 6.7440 48 1 4.0452 3.1574 8.5286 49 1 4.3492 1.7314 5.9628 50 1 5.6612 0.9009 6.8462 51 1 5.3736 0.7728 4.0627 52 1 6.1423 -0.5364 5.0240 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991363352.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:14 Heat of formation + Delta-G solvation = 15.779960 kcal Electronic energy + Delta-G solvation = -31591.142730 eV Core-core repulsion = 27748.862183 eV Total energy + Delta-G solvation = -3842.280547 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.54159 -39.60398 -37.76181 -34.44445 -34.29080 -32.94176 -32.45036 -31.63125 -29.91053 -29.45002 -27.48443 -26.96236 -25.62925 -24.05479 -23.84131 -22.21517 -21.03835 -20.50206 -20.06853 -19.52857 -18.66413 -16.80880 -16.47824 -16.30007 -16.00199 -15.71607 -15.11866 -14.67478 -14.53644 -14.28135 -13.95150 -13.91003 -13.69731 -13.53769 -13.41139 -12.95227 -12.90487 -12.56824 -12.32526 -12.07195 -11.95543 -11.82102 -11.78420 -11.40713 -11.29254 -11.27805 -11.02073 -10.93328 -10.81469 -10.76589 -10.64828 -10.47454 -10.29809 -10.00903 -9.96261 -9.70501 -9.53686 -9.06754 -8.68510 -8.67231 -8.46685 -8.38648 -6.87256 -5.76100 -3.10765 1.43350 1.50208 3.14607 3.36001 3.41260 3.42567 3.61681 3.99925 4.43458 4.63016 4.70879 4.78547 4.95550 5.02497 5.13951 5.16903 5.22191 5.27945 5.30814 5.41265 5.45610 5.49090 5.55679 5.60485 5.62728 5.70495 5.73986 5.83529 5.83832 5.91216 5.94764 5.98308 6.05725 6.14137 6.17061 6.23209 6.28028 6.30906 6.36607 6.43220 6.50504 6.56136 6.59641 6.71183 6.76042 6.85165 6.91763 7.10541 7.26372 7.52408 7.60021 7.76933 8.12672 8.18701 8.79575 9.11642 9.78335 10.48056 11.35898 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011770 B = 0.003693 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.290509 B = 7580.057839 C = 8615.146730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 C -0.065 4.065 4 C -0.121 4.121 5 C -0.123 4.123 6 C -0.125 4.125 7 C -0.103 4.103 8 C -0.052 4.052 9 C -0.111 4.111 10 C 0.517 3.483 11 O -0.539 6.539 12 N -0.691 5.691 13 C 0.133 3.867 14 C -0.111 4.111 15 C -0.115 4.115 16 C -0.115 4.115 17 C 0.158 3.842 18 H 0.020 0.980 19 N -0.582 5.582 20 C -0.232 4.232 21 H 0.078 0.922 22 C -0.003 4.003 23 N -0.918 5.918 24 Si 0.909 3.091 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.285 1.285 28 C 0.181 3.819 29 C -0.142 4.142 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.400 0.600 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.063 0.937 48 H 0.253 0.747 49 H 0.063 0.937 50 H 0.033 0.967 51 H 0.076 0.924 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.741 -4.010 -16.042 17.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.124 4.124 3 C -0.065 4.065 4 C -0.139 4.139 5 C -0.141 4.141 6 C -0.143 4.143 7 C -0.121 4.121 8 C -0.053 4.053 9 C -0.150 4.150 10 C 0.303 3.697 11 O -0.417 6.417 12 N -0.342 5.342 13 C 0.045 3.955 14 C -0.150 4.150 15 C -0.154 4.154 16 C -0.153 4.153 17 C 0.048 3.952 18 H 0.037 0.963 19 N -0.306 5.306 20 C -0.360 4.360 21 H 0.096 0.904 22 C -0.200 4.200 23 N -0.564 5.564 24 Si 0.739 3.261 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.212 1.212 28 C 0.057 3.943 29 C -0.181 4.181 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.235 0.765 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.063 0.937 49 H 0.082 0.918 50 H 0.051 0.949 51 H 0.095 0.905 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.027 -3.824 -16.291 17.473 hybrid contribution -0.803 0.403 1.198 1.497 sum -5.830 -3.422 -15.093 16.538 Atomic orbital electron populations 1.21776 0.94873 1.01662 1.02127 1.20541 0.95782 0.93022 1.03040 1.19636 0.98657 0.95621 0.92615 1.20917 1.00609 0.95218 0.97177 1.21047 1.00262 0.94909 0.97865 1.21048 1.00791 0.99905 0.92554 1.21043 0.98207 0.94619 0.98262 1.19139 0.99155 0.93844 0.93138 1.20778 0.98077 1.00311 0.95883 1.20233 0.89039 0.79442 0.81001 1.90664 1.30811 1.63357 1.56836 1.45669 1.16703 1.48952 1.22832 1.21545 0.87280 0.89964 0.96668 1.21875 0.99609 0.94607 0.98890 1.22803 0.98498 0.97955 0.96114 1.21905 0.98908 0.97589 0.96947 1.20907 0.96143 0.89417 0.88772 0.96278 1.43630 1.45016 1.10581 1.31326 1.18959 1.15244 0.98551 1.03267 0.90425 1.24785 0.99323 0.96521 0.99374 1.69919 1.38105 1.06489 1.41919 0.86259 0.79878 0.77284 0.82656 1.21210 1.21653 1.21191 1.21983 0.91273 0.93166 0.87889 1.22815 0.95626 0.99469 1.00191 0.92413 0.92423 0.92627 0.91253 0.90867 0.86508 0.86506 0.86333 0.86076 0.88323 0.88097 0.76518 0.91794 0.91275 0.92249 0.92000 0.91766 0.91821 0.93650 0.91837 0.94880 0.90494 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.72 37.16 0.36 -0.98 16 2 C -0.09 -0.97 5.38 -27.88 -0.15 -1.12 16 3 C -0.07 -0.84 5.13 -104.62 -0.54 -1.38 16 4 C -0.12 -1.45 9.68 -39.59 -0.38 -1.83 16 5 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 6 C -0.12 -1.55 10.05 -39.58 -0.40 -1.95 16 7 C -0.10 -1.43 9.68 -39.58 -0.38 -1.82 16 8 C -0.05 -0.73 4.37 -104.62 -0.46 -1.19 16 9 C -0.11 -1.51 5.16 -29.03 -0.15 -1.66 16 10 C 0.52 8.68 6.39 -10.98 -0.07 8.61 16 11 O -0.54 -10.63 14.16 5.56 0.08 -10.55 16 12 N -0.69 -11.75 4.48 -46.39 -0.21 -11.96 16 13 C 0.13 2.40 0.42 -130.51 -0.06 2.34 16 14 C -0.11 -1.71 6.18 -26.19 -0.16 -1.87 16 15 C -0.12 -1.56 6.95 -23.53 -0.16 -1.73 16 16 C -0.11 -1.84 6.47 -26.04 -0.17 -2.01 16 17 C 0.16 3.11 2.71 -68.35 -0.19 2.93 16 18 H 0.02 0.41 7.99 -51.93 -0.42 0.00 16 19 N -0.58 -13.96 3.16 -162.25 -0.51 -14.47 16 20 C -0.23 -6.08 10.30 -15.06 -0.16 -6.23 16 21 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 22 C 0.00 -0.08 5.49 -17.43 -0.10 -0.18 16 23 N -0.92 -26.16 10.55 55.49 0.59 -25.58 16 24 Si 0.91 21.35 29.55 -169.99 -5.02 16.33 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 28 C 0.18 4.35 5.33 -0.76 0.00 4.35 16 29 C -0.14 -2.89 6.09 -25.44 -0.15 -3.04 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.53 6.79 -51.93 -0.35 0.18 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.71 8.05 -51.93 -0.42 0.29 16 34 H 0.07 0.92 6.40 -51.93 -0.33 0.59 16 35 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 36 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 38 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 39 H 0.10 1.12 5.63 -51.93 -0.29 0.83 16 40 H 0.10 1.33 8.05 -51.93 -0.42 0.91 16 41 H 0.40 6.66 7.60 -40.82 -0.31 6.35 16 42 H 0.06 1.00 7.73 -51.93 -0.40 0.60 16 43 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.06 1.02 7.20 -51.93 -0.37 0.64 16 47 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 48 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 49 H 0.06 1.71 7.06 -51.93 -0.37 1.34 16 50 H 0.03 0.88 7.98 -51.93 -0.41 0.46 16 51 H 0.08 1.65 6.28 -51.93 -0.33 1.32 16 52 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 400.92 15.07 6.04 6.04 Total: -1.00 -30.57 400.92 -11.37 -41.93 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -8.62 Total: 8.83 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -3.71 Total: -10.58 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: -0.13 Total: -52.01 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.08 Total: -10.55 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -30.57 -11.37 -41.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991363352.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.715 kcal (2) G-P(sol) polarization free energy of solvation -30.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds