Wall clock time and date at job start Wed Apr 1 2020 03:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47017 * 2 1 4 4 C 1.38255 * 120.00153 * 265.20850 * 3 2 1 5 5 C 1.38210 * 119.99695 * 180.23079 * 4 3 2 6 6 C 1.38261 * 120.00280 * 359.81616 * 5 4 3 7 7 C 1.38209 * 119.99615 * 359.97438 * 6 5 4 8 8 C 1.38217 * 119.99367 * 85.00241 * 3 2 1 9 9 C 1.50697 * 120.00628 * 359.97438 * 8 3 2 10 10 C 1.50704 * 109.46632 * 84.72668 * 9 8 3 11 11 O 1.21282 * 120.00164 * 0.02562 * 10 9 8 12 12 N 1.34782 * 119.99698 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99806 * 180.02562 * 12 10 9 14 14 C 1.51229 * 111.06634 * 281.62167 * 13 12 10 15 15 C 1.55693 * 104.60481 * 275.45803 * 14 13 12 16 16 C 1.56280 * 105.93759 * 352.75280 * 15 14 13 17 17 C 1.50874 * 102.24372 * 336.01087 * 16 15 14 18 18 H 1.08996 * 107.58020 * 292.61533 * 17 16 15 19 19 N 1.42704 * 128.63540 * 160.38423 * 17 16 15 20 20 C 1.36939 * 127.10149 * 28.57618 * 19 17 16 21 21 H 1.07997 * 119.99728 * 359.43258 * 20 19 17 22 22 C 1.38815 * 119.99845 * 179.71172 * 20 19 17 23 23 N 1.31619 * 119.99884 * 359.72042 * 22 20 19 24 24 Si 1.86798 * 119.99660 * 179.72678 * 22 20 19 25 25 H 1.48498 * 109.47416 * 59.99578 * 24 22 20 26 26 H 1.48508 * 109.46609 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.46903 * 299.99163 * 24 22 20 28 28 C 1.49296 * 105.79439 * 208.31565 * 19 17 16 29 29 C 1.52127 * 111.08685 * 61.01552 * 13 12 10 30 30 H 1.09002 * 109.47539 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47583 * 299.99844 * 1 2 3 32 32 H 1.09000 * 109.47077 * 59.99821 * 1 2 3 33 33 H 1.08998 * 109.46906 * 240.00185 * 2 1 3 34 34 H 1.09000 * 109.47077 * 120.00179 * 2 1 3 35 35 H 1.07995 * 119.99872 * 0.06771 * 4 3 2 36 36 H 1.07995 * 119.99903 * 179.83296 * 5 4 3 37 37 H 1.08000 * 120.00012 * 179.97438 * 6 5 4 38 38 H 1.08007 * 120.00062 * 179.97438 * 7 6 5 39 39 H 1.09000 * 109.46967 * 324.73421 * 9 8 3 40 40 H 1.08990 * 109.47446 * 204.72806 * 9 8 3 41 41 H 0.97001 * 120.00263 * 0.02562 * 12 10 9 42 42 H 1.08994 * 110.40961 * 34.23957 * 14 13 12 43 43 H 1.09000 * 110.40975 * 156.56119 * 14 13 12 44 44 H 1.09009 * 110.15752 * 111.86536 * 15 14 13 45 45 H 1.08999 * 110.16140 * 233.56137 * 15 14 13 46 46 H 1.09004 * 110.97135 * 93.85526 * 16 15 14 47 47 H 1.09004 * 110.97456 * 217.58561 * 16 15 14 48 48 H 0.97000 * 119.99517 * 180.02562 * 23 22 20 49 49 H 1.09006 * 110.04750 * 128.16639 * 28 19 17 50 50 H 1.08996 * 110.05013 * 249.63802 * 28 19 17 51 51 H 1.09001 * 111.15090 * 316.07010 * 29 13 12 52 52 H 1.08998 * 111.15242 * 191.84389 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3570 2.0393 -1.1931 5 6 2.8222 3.3407 -1.1926 6 6 2.9593 4.0255 0.0007 7 6 2.6305 3.4086 1.1930 8 6 2.1643 2.1070 1.1925 9 6 1.8054 1.4347 2.4926 10 6 2.9821 0.6318 2.9844 11 8 4.0110 0.6083 2.3426 12 7 2.8911 -0.0601 4.1374 13 6 4.0352 -0.8402 4.6158 14 6 4.1506 -2.1500 3.8688 15 6 3.1875 -3.1161 4.6193 16 6 2.7061 -2.3418 5.8886 17 6 3.8187 -1.3440 6.0958 18 1 4.7117 -1.9009 6.3794 19 7 3.7971 -0.1276 6.8416 20 6 3.0204 0.1589 7.9324 21 1 2.3241 -0.5764 8.3076 22 6 3.1240 1.3966 8.5524 23 7 3.9726 2.2927 8.0951 24 14 2.0590 1.7901 10.0358 25 1 2.3455 0.8194 11.1224 26 1 2.3587 3.1653 10.5094 27 1 0.6265 1.6984 9.6549 28 6 4.8007 0.7659 6.1910 29 6 5.2391 0.0541 4.8711 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.2497 1.5045 -2.1252 36 1 3.0784 3.8229 -2.1244 37 1 3.3232 5.0423 0.0011 38 1 2.7379 3.9433 2.1252 39 1 0.9538 0.7726 2.3362 40 1 1.5465 2.1910 3.2334 41 1 2.0681 -0.0416 4.6505 42 1 3.8339 -2.0262 2.8333 43 1 5.1741 -2.5225 3.9105 44 1 2.3361 -3.3649 3.9857 45 1 3.7169 -4.0235 4.9098 46 1 1.7635 -1.8286 5.6983 47 1 2.6176 -3.0116 6.7440 48 1 4.0452 3.1574 8.5286 49 1 4.3492 1.7314 5.9628 50 1 5.6612 0.9009 6.8462 51 1 5.3736 0.7728 4.0627 52 1 6.1423 -0.5364 5.0240 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991363352.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:13 Heat of formation + Delta-G solvation = 0.412027 kcal Electronic energy + Delta-G solvation = -31591.809134 eV Core-core repulsion = 27748.862183 eV Total energy + Delta-G solvation = -3842.946951 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.96293 -40.70350 -39.11246 -36.16559 -35.17178 -34.34096 -33.71750 -33.27625 -31.55622 -30.34791 -28.65419 -28.50544 -27.10260 -25.92380 -24.69995 -23.30843 -22.32731 -21.92877 -21.27121 -21.01147 -20.11625 -18.37219 -18.06266 -17.46443 -17.16636 -17.01972 -16.41137 -16.10187 -15.97727 -15.68732 -15.58114 -15.11321 -14.94212 -14.61341 -14.32904 -14.14363 -14.05498 -13.90811 -13.83778 -13.54046 -13.12387 -13.04888 -12.90783 -12.86047 -12.76626 -12.62691 -12.54555 -12.19052 -12.15311 -12.09343 -12.02260 -11.77807 -11.65091 -11.54412 -11.53202 -11.33222 -11.05821 -10.70911 -10.53443 -9.82754 -9.66461 -9.44135 -8.86326 -7.82964 -5.18824 0.46260 0.53613 1.47867 1.50043 1.56226 1.80828 2.36783 2.51210 2.94573 3.10647 3.36997 3.71722 3.75181 3.88321 3.91522 4.01868 4.09007 4.11791 4.14019 4.31576 4.32543 4.36131 4.42967 4.43951 4.52899 4.55606 4.58931 4.63977 4.66825 4.75493 4.78033 4.82691 4.96896 5.00658 5.05457 5.08842 5.11502 5.12974 5.19547 5.25662 5.26204 5.30912 5.43317 5.49945 5.56467 5.60561 5.62469 5.64701 5.68723 5.79051 5.86036 6.17403 6.18618 6.75573 7.04724 7.43914 7.77881 8.51035 9.28758 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011770 B = 0.003693 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.290509 B = 7580.057839 C = 8615.146730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 C -0.076 4.076 4 C -0.128 4.128 5 C -0.124 4.124 6 C -0.135 4.135 7 C -0.128 4.128 8 C -0.072 4.072 9 C -0.102 4.102 10 C 0.518 3.482 11 O -0.569 6.569 12 N -0.691 5.691 13 C 0.142 3.858 14 C -0.106 4.106 15 C -0.100 4.100 16 C -0.109 4.109 17 C 0.145 3.855 18 H 0.011 0.989 19 N -0.595 5.595 20 C -0.233 4.233 21 H 0.089 0.911 22 C -0.062 4.062 23 N -0.952 5.952 24 Si 0.973 3.027 25 H -0.280 1.280 26 H -0.302 1.302 27 H -0.272 1.272 28 C 0.194 3.806 29 C -0.132 4.132 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.135 0.865 38 H 0.112 0.888 39 H 0.123 0.877 40 H 0.099 0.901 41 H 0.402 0.598 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.066 0.934 47 H 0.070 0.930 48 H 0.244 0.756 49 H 0.028 0.972 50 H -0.004 1.004 51 H 0.063 0.937 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.594 -6.154 -17.712 20.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 C -0.076 4.076 4 C -0.145 4.145 5 C -0.141 4.141 6 C -0.153 4.153 7 C -0.146 4.146 8 C -0.073 4.073 9 C -0.142 4.142 10 C 0.305 3.695 11 O -0.449 6.449 12 N -0.341 5.341 13 C 0.054 3.946 14 C -0.145 4.145 15 C -0.138 4.138 16 C -0.148 4.148 17 C 0.036 3.964 18 H 0.029 0.971 19 N -0.318 5.318 20 C -0.361 4.361 21 H 0.107 0.893 22 C -0.255 4.255 23 N -0.601 5.601 24 Si 0.802 3.198 25 H -0.207 1.207 26 H -0.228 1.228 27 H -0.198 1.198 28 C 0.069 3.931 29 C -0.171 4.171 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.159 0.841 36 H 0.162 0.838 37 H 0.153 0.847 38 H 0.131 0.869 39 H 0.141 0.859 40 H 0.118 0.882 41 H 0.238 0.762 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.101 0.899 45 H 0.100 0.900 46 H 0.085 0.915 47 H 0.089 0.911 48 H 0.053 0.947 49 H 0.046 0.954 50 H 0.014 0.986 51 H 0.082 0.918 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.907 -6.015 -17.970 20.169 hybrid contribution -0.148 1.085 1.688 2.012 sum -7.054 -4.930 -16.282 18.417 Atomic orbital electron populations 1.21747 0.93270 1.02646 1.02293 1.20548 0.97106 0.91757 1.02726 1.19931 0.98528 0.96522 0.92583 1.21280 0.99899 0.95544 0.97814 1.21417 0.99206 0.94933 0.98586 1.21320 1.00671 1.00855 0.92454 1.21195 0.99445 0.95202 0.98767 1.19253 1.00285 0.94099 0.93634 1.20742 0.97374 1.00169 0.95887 1.20718 0.89462 0.78927 0.80390 1.90641 1.32221 1.64337 1.57714 1.45692 1.16405 1.49094 1.22946 1.21486 0.86234 0.90626 0.96233 1.21867 1.00777 0.93141 0.98725 1.22736 0.98926 0.97502 0.94649 1.21925 0.97536 0.96712 0.98612 1.21136 0.97713 0.88652 0.88928 0.97128 1.43736 1.44549 1.12043 1.31446 1.19374 1.14780 0.98513 1.03460 0.89285 1.25572 1.00899 0.96726 1.02288 1.70150 1.40112 1.06533 1.43280 0.85230 0.78806 0.76243 0.79502 1.20662 1.22840 1.19809 1.21625 0.89837 0.92577 0.89018 1.22649 0.97428 0.99566 0.97446 0.90992 0.92746 0.91986 0.90284 0.92397 0.84121 0.83761 0.84720 0.86945 0.85906 0.88233 0.76236 0.91728 0.90665 0.89857 0.89984 0.91486 0.91103 0.94662 0.95409 0.98609 0.91804 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.72 71.98 0.70 -1.55 16 2 C -0.08 -1.72 5.38 29.85 0.16 -1.56 16 3 C -0.08 -1.87 5.13 -19.87 -0.10 -1.97 16 4 C -0.13 -2.79 9.68 22.27 0.22 -2.58 16 5 C -0.12 -2.65 10.05 22.27 0.22 -2.42 16 6 C -0.14 -3.28 10.05 22.27 0.22 -3.06 16 7 C -0.13 -3.64 9.68 22.27 0.22 -3.43 16 8 C -0.07 -2.02 4.37 -19.87 -0.09 -2.11 16 9 C -0.10 -2.78 5.16 29.10 0.15 -2.63 16 10 C 0.52 17.44 6.39 87.66 0.56 18.00 16 11 O -0.57 -22.70 14.16 -3.04 -0.04 -22.74 16 12 N -0.69 -23.31 4.48 -419.08 -1.88 -25.19 16 13 C 0.14 5.04 0.42 4.45 0.00 5.04 16 14 C -0.11 -3.03 6.18 30.95 0.19 -2.84 16 15 C -0.10 -2.34 6.95 32.66 0.23 -2.11 16 16 C -0.11 -3.23 6.47 31.04 0.20 -3.03 16 17 C 0.14 5.60 2.71 46.71 0.13 5.72 16 18 H 0.01 0.46 7.99 -2.39 -0.02 0.44 16 19 N -0.59 -29.05 3.16 -667.25 -2.11 -31.15 16 20 C -0.23 -12.27 10.30 84.03 0.87 -11.41 16 21 H 0.09 4.41 7.83 -2.91 -0.02 4.39 16 22 C -0.06 -3.40 5.49 84.86 0.47 -2.94 16 23 N -0.95 -56.76 10.55 21.65 0.23 -56.53 16 24 Si 0.97 44.49 29.55 68.60 2.03 46.52 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 26 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 27 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 28 C 0.19 9.86 5.33 86.96 0.46 10.32 16 29 C -0.13 -5.52 6.09 31.43 0.19 -5.33 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.05 0.89 6.79 -2.39 -0.02 0.87 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.08 1.43 8.05 -2.39 -0.02 1.41 16 34 H 0.06 1.36 6.40 -2.39 -0.02 1.34 16 35 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 36 H 0.14 2.22 8.06 -2.91 -0.02 2.19 16 37 H 0.13 2.68 8.06 -2.91 -0.02 2.66 16 38 H 0.11 3.23 8.06 -2.91 -0.02 3.21 16 39 H 0.12 2.66 5.63 -2.39 -0.01 2.65 16 40 H 0.10 2.70 8.05 -2.39 -0.02 2.68 16 41 H 0.40 13.18 7.60 -92.71 -0.70 12.47 16 42 H 0.06 1.87 7.73 -2.39 -0.02 1.85 16 43 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 45 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.07 1.95 7.20 -2.38 -0.02 1.93 16 47 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 48 H 0.24 14.38 8.31 -92.71 -0.77 13.61 16 49 H 0.03 1.59 7.06 -2.38 -0.02 1.57 16 50 H 0.00 -0.25 7.98 -2.39 -0.02 -0.27 16 51 H 0.06 2.84 6.28 -2.39 -0.01 2.83 16 52 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -68.69 400.92 3.43 -65.26 By element: Atomic # 1 Polarization: 33.49 SS G_CDS: 0.20 Total: 33.69 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: 4.99 Total: -9.86 kcal Atomic # 7 Polarization: -109.12 SS G_CDS: -3.76 Total: -112.87 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.04 Total: -22.74 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -68.69 3.43 -65.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991363352.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.675 kcal (2) G-P(sol) polarization free energy of solvation -68.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds