Wall clock time and date at job start Wed Apr 1 2020 03:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47365 * 2 1 4 4 C 1.38260 * 119.99925 * 264.98031 * 3 2 1 5 5 C 1.38213 * 119.99702 * 179.97438 * 4 3 2 6 6 C 1.38245 * 120.00340 * 359.97407 * 5 4 3 7 7 C 1.38214 * 120.00003 * 359.81319 * 6 5 4 8 8 C 1.38215 * 120.00043 * 84.99256 * 3 2 1 9 9 C 1.50696 * 120.00060 * 359.97438 * 8 3 2 10 10 C 1.50705 * 109.47076 * 84.99465 * 9 8 3 11 11 O 1.21284 * 120.00041 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99881 * 179.97438 * 10 9 8 13 13 C 1.46506 * 119.99954 * 180.02562 * 12 10 9 14 14 C 1.53584 * 112.66999 * 59.33652 * 13 12 10 15 15 C 1.54226 * 106.67336 * 121.44130 * 14 13 12 16 16 C 1.54761 * 104.15391 * 24.94805 * 15 14 13 17 17 C 1.54775 * 103.21205 * 322.18174 * 16 15 14 18 18 H 1.08997 * 112.62135 * 274.66400 * 17 16 15 19 19 N 1.46986 * 108.68736 * 150.20155 * 17 16 15 20 20 C 1.36941 * 125.57477 * 65.89362 * 19 17 16 21 21 H 1.07992 * 120.00001 * 359.97438 * 20 19 17 22 22 C 1.38809 * 119.99594 * 180.02562 * 20 19 17 23 23 N 1.31616 * 120.00407 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99829 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47248 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46976 * 119.99922 * 24 22 20 27 27 H 1.48505 * 109.47287 * 239.99735 * 24 22 20 28 28 C 1.47370 * 108.84223 * 245.87073 * 19 17 16 29 29 C 1.54865 * 104.82018 * 24.69139 * 28 19 17 30 30 H 1.08995 * 109.47633 * 300.00164 * 1 2 3 31 31 H 1.08998 * 109.47088 * 60.00559 * 1 2 3 32 32 H 1.09007 * 109.47522 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47413 * 239.99433 * 2 1 3 34 34 H 1.09009 * 109.46698 * 119.99776 * 2 1 3 35 35 H 1.07997 * 119.99434 * 359.96910 * 4 3 2 36 36 H 1.07999 * 119.99432 * 179.97438 * 5 4 3 37 37 H 1.08001 * 120.00058 * 179.97438 * 6 5 4 38 38 H 1.08004 * 120.00361 * 180.23097 * 7 6 5 39 39 H 1.09003 * 109.47020 * 324.99898 * 9 8 3 40 40 H 1.08997 * 109.47092 * 204.99542 * 9 8 3 41 41 H 0.96993 * 120.00152 * 0.02562 * 12 10 9 42 42 H 1.08997 * 110.01519 * 240.75128 * 14 13 12 43 43 H 1.09005 * 110.01637 * 2.09835 * 14 13 12 44 44 H 1.08997 * 110.48865 * 143.61196 * 15 14 13 45 45 H 1.08998 * 110.49728 * 266.27590 * 15 14 13 46 46 H 1.08997 * 110.66359 * 203.75682 * 16 15 14 47 47 H 1.08997 * 110.67453 * 80.61477 * 16 15 14 48 48 H 0.97001 * 120.00797 * 180.02562 * 23 22 20 49 49 H 1.09000 * 110.36530 * 143.52909 * 28 19 17 50 50 H 1.08993 * 110.36805 * 265.85260 * 28 19 17 51 51 H 1.09005 * 110.96691 * 81.04665 * 29 28 19 52 52 H 1.08997 * 110.96963 * 204.76895 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3616 2.0376 -1.1928 5 6 2.8218 3.3408 -1.1928 6 6 2.9525 4.0278 -0.0002 7 6 2.6192 3.4127 1.1918 8 6 2.1642 2.1071 1.1924 9 6 1.8051 1.4350 2.4924 10 6 2.9839 0.6373 2.9879 11 8 4.0143 0.6171 2.3485 12 7 2.8933 -0.0528 4.1421 13 6 4.0394 -0.8278 4.6241 14 6 5.2855 0.0398 4.8552 15 6 5.6741 -0.1301 6.3380 16 6 5.0895 -1.5093 6.7268 17 6 3.7431 -1.5505 5.9645 18 1 2.9345 -1.0706 6.5156 19 7 3.4282 -2.9491 5.6402 20 6 3.1455 -3.9335 6.5492 21 1 3.1428 -3.7085 7.6055 22 6 2.8635 -5.2208 6.1130 23 7 2.8674 -5.4951 4.8258 24 14 2.4787 -6.5638 7.3531 25 1 2.5379 -6.0014 8.7262 26 1 1.1175 -7.0993 7.0963 27 1 3.4739 -7.6582 7.2224 28 6 3.4658 -3.1185 4.1767 29 6 4.4034 -1.9941 3.6718 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 2.2592 1.5009 -2.1244 36 1 3.0794 3.8225 -2.1245 37 1 3.3126 5.0460 -0.0003 38 1 2.7177 3.9506 2.1231 39 1 0.9564 0.7693 2.3350 40 1 1.5415 2.1912 3.2318 41 1 2.0694 -0.0363 4.6536 42 1 6.0998 -0.2989 4.2148 43 1 5.0566 1.0848 4.6462 44 1 6.7582 -0.1297 6.4508 45 1 5.2262 0.6584 6.9427 46 1 4.9244 -1.5677 7.8026 47 1 5.7454 -2.3133 6.3930 48 1 2.6700 -6.3946 4.5209 49 1 3.8725 -4.0962 3.9184 50 1 2.4679 -2.9983 3.7551 51 1 5.4496 -2.2783 3.7854 52 1 4.1814 -1.7368 2.6362 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991363357.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:28 Heat of formation + Delta-G solvation = 3.070340 kcal Electronic energy + Delta-G solvation = -31188.185659 eV Core-core repulsion = 27345.353982 eV Total energy + Delta-G solvation = -3842.831678 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -40.43035 -39.49668 -37.85690 -34.34560 -34.21768 -33.37089 -32.55638 -31.40283 -29.86233 -29.48245 -27.71418 -26.70978 -25.70841 -23.86764 -23.83437 -22.30338 -21.24869 -20.48012 -19.96441 -19.38007 -18.75583 -17.03950 -16.80820 -16.38243 -16.09596 -15.74875 -15.05861 -14.94166 -14.49758 -14.21003 -13.95552 -13.78428 -13.54080 -13.49008 -13.24343 -13.09401 -12.92376 -12.78979 -12.22788 -12.15367 -12.01718 -11.80791 -11.72609 -11.59412 -11.30642 -11.15675 -10.98377 -10.85470 -10.81471 -10.69660 -10.65115 -10.51516 -10.12367 -10.04537 -9.94117 -9.73242 -9.61556 -9.35417 -8.79231 -8.66519 -8.56711 -8.49290 -6.85707 -5.65207 -3.08362 1.32982 1.40144 2.93865 3.37889 3.41955 3.44432 3.46192 3.85507 4.46699 4.60912 4.71928 4.86319 4.88082 4.93319 5.10658 5.16763 5.18179 5.21749 5.33137 5.35458 5.38475 5.47021 5.51824 5.56577 5.60793 5.66778 5.84040 5.85915 5.88097 5.94972 5.99322 6.02135 6.09000 6.09850 6.16797 6.23717 6.30391 6.37687 6.43880 6.46320 6.48274 6.56363 6.61579 6.66916 6.79475 6.80666 7.00319 7.01091 7.16566 7.54528 7.64745 7.84907 7.90283 8.36391 8.57831 9.21024 9.82068 10.46288 11.37247 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015128 B = 0.003152 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.415328 B = 8881.225100 C =10147.836659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.060 4.060 4 C -0.119 4.119 5 C -0.121 4.121 6 C -0.127 4.127 7 C -0.106 4.106 8 C -0.057 4.057 9 C -0.110 4.110 10 C 0.514 3.486 11 O -0.528 6.528 12 N -0.707 5.707 13 C 0.162 3.838 14 C -0.109 4.109 15 C -0.125 4.125 16 C -0.128 4.128 17 C 0.161 3.839 18 H 0.046 0.954 19 N -0.596 5.596 20 C -0.219 4.219 21 H 0.077 0.923 22 C -0.011 4.011 23 N -0.920 5.920 24 Si 0.912 3.088 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.153 3.847 29 C -0.141 4.141 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.398 0.602 42 H 0.068 0.932 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.057 0.943 47 H 0.074 0.926 48 H 0.251 0.749 49 H 0.107 0.893 50 H 0.008 0.992 51 H 0.066 0.934 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.450 17.309 -7.500 19.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.128 4.128 3 C -0.060 4.060 4 C -0.137 4.137 5 C -0.139 4.139 6 C -0.145 4.145 7 C -0.124 4.124 8 C -0.057 4.057 9 C -0.150 4.150 10 C 0.300 3.700 11 O -0.404 6.404 12 N -0.358 5.358 13 C 0.076 3.924 14 C -0.148 4.148 15 C -0.163 4.163 16 C -0.168 4.168 17 C 0.053 3.947 18 H 0.063 0.937 19 N -0.320 5.320 20 C -0.347 4.347 21 H 0.095 0.905 22 C -0.206 4.206 23 N -0.568 5.568 24 Si 0.743 3.257 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.218 1.218 28 C 0.029 3.971 29 C -0.180 4.180 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.121 0.879 40 H 0.116 0.884 41 H 0.232 0.768 42 H 0.087 0.913 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.093 0.907 48 H 0.062 0.938 49 H 0.125 0.875 50 H 0.026 0.974 51 H 0.084 0.916 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.778 17.032 -7.959 18.884 hybrid contribution -0.632 -0.640 0.874 1.254 sum -2.410 16.392 -7.085 18.019 Atomic orbital electron populations 1.21761 0.94720 1.02029 1.01846 1.20587 0.95943 0.92714 1.03531 1.19704 0.97972 0.95768 0.92570 1.20976 1.00205 0.95156 0.97370 1.21064 1.00048 0.94858 0.97916 1.21019 1.01018 0.99862 0.92607 1.20945 0.98910 0.94492 0.98047 1.19115 0.99636 0.93834 0.93163 1.20784 0.98206 1.00148 0.95829 1.20315 0.89245 0.79663 0.80781 1.90711 1.30789 1.62830 1.56050 1.45920 1.16631 1.49390 1.23821 1.21604 0.85101 0.90482 0.95241 1.22235 0.97021 0.99220 0.96286 1.22370 0.99977 0.98107 0.95848 1.22926 0.98276 0.95882 0.99763 1.21806 0.94465 0.86989 0.91444 0.93661 1.44542 1.81824 1.02983 1.02660 1.19076 1.39492 0.87883 0.88280 0.90497 1.24775 1.02218 0.97470 0.96147 1.69813 1.55716 1.19473 1.11813 0.86039 0.77557 0.82061 0.80066 1.20575 1.21859 1.21797 1.21956 0.94655 0.97978 0.82534 1.23315 1.00746 0.95827 0.98160 0.92599 0.92681 0.92061 0.90986 0.90608 0.86304 0.86422 0.86390 0.86399 0.87863 0.88413 0.76771 0.91288 0.92386 0.92305 0.92418 0.92406 0.90730 0.93835 0.87538 0.97367 0.91559 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.72 37.16 0.36 -1.10 16 2 C -0.09 -1.09 5.38 -27.89 -0.15 -1.24 16 3 C -0.06 -0.75 5.13 -104.62 -0.54 -1.29 16 4 C -0.12 -1.37 9.68 -39.58 -0.38 -1.75 16 5 C -0.12 -1.28 10.05 -39.59 -0.40 -1.68 16 6 C -0.13 -1.36 10.05 -39.59 -0.40 -1.76 16 7 C -0.11 -1.23 9.68 -39.58 -0.38 -1.61 16 8 C -0.06 -0.71 4.37 -104.63 -0.46 -1.17 16 9 C -0.11 -1.27 5.16 -29.03 -0.15 -1.42 16 10 C 0.51 7.75 6.20 -10.98 -0.07 7.68 16 11 O -0.53 -9.74 13.91 5.55 0.08 -9.66 16 12 N -0.71 -10.83 5.25 -45.35 -0.24 -11.06 16 13 C 0.16 2.88 0.75 -129.37 -0.10 2.78 16 14 C -0.11 -1.79 5.23 -25.79 -0.13 -1.92 16 15 C -0.12 -1.88 6.84 -25.16 -0.17 -2.05 16 16 C -0.13 -2.31 6.21 -24.87 -0.15 -2.47 16 17 C 0.16 3.16 3.66 -65.60 -0.24 2.92 16 18 H 0.05 0.87 7.98 -51.93 -0.41 0.46 16 19 N -0.60 -14.45 3.03 -161.13 -0.49 -14.93 16 20 C -0.22 -5.84 10.01 -15.06 -0.15 -5.99 16 21 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 22 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 23 N -0.92 -26.34 10.07 55.49 0.56 -25.78 16 24 Si 0.91 21.69 29.55 -169.99 -5.02 16.66 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 28 C 0.15 3.70 5.91 -2.58 -0.02 3.69 16 29 C -0.14 -2.89 5.75 -24.74 -0.14 -3.03 16 30 H 0.05 0.53 6.80 -51.93 -0.35 0.18 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 33 H 0.07 0.83 8.05 -51.93 -0.42 0.41 16 34 H 0.08 1.06 6.42 -51.92 -0.33 0.73 16 35 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 36 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 37 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 39 H 0.10 1.08 5.62 -51.93 -0.29 0.79 16 40 H 0.10 0.88 8.05 -51.93 -0.42 0.47 16 41 H 0.40 5.36 8.49 -40.82 -0.35 5.01 16 42 H 0.07 1.19 7.37 -51.93 -0.38 0.81 16 43 H 0.06 0.94 7.43 -51.93 -0.39 0.55 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.07 1.50 8.09 -51.93 -0.42 1.08 16 48 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 49 H 0.11 2.93 5.82 -51.93 -0.30 2.63 16 50 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 51 H 0.07 1.37 7.62 -51.93 -0.40 0.98 16 52 H 0.06 1.35 6.82 -51.93 -0.35 1.00 16 LS Contribution 400.18 15.07 6.03 6.03 Total: -1.00 -31.07 400.18 -11.44 -42.51 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -8.59 Total: 8.03 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -3.77 Total: -11.79 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: -0.17 Total: -51.78 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.08 Total: -9.66 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.07 -11.44 -42.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991363357.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.577 kcal (2) G-P(sol) polarization free energy of solvation -31.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds