Wall clock time and date at job start Wed Apr 1 2020 03:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47365 * 2 1 4 4 C 1.38260 * 119.99925 * 264.98031 * 3 2 1 5 5 C 1.38213 * 119.99702 * 179.97438 * 4 3 2 6 6 C 1.38245 * 120.00340 * 359.97407 * 5 4 3 7 7 C 1.38214 * 120.00003 * 359.81319 * 6 5 4 8 8 C 1.38215 * 120.00043 * 84.99256 * 3 2 1 9 9 C 1.50696 * 120.00060 * 359.97438 * 8 3 2 10 10 C 1.50705 * 109.47076 * 84.99465 * 9 8 3 11 11 O 1.21284 * 120.00041 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99881 * 179.97438 * 10 9 8 13 13 C 1.46506 * 119.99954 * 180.02562 * 12 10 9 14 14 C 1.53584 * 112.66999 * 59.33652 * 13 12 10 15 15 C 1.54226 * 106.67336 * 121.44130 * 14 13 12 16 16 C 1.54761 * 104.15391 * 24.94805 * 15 14 13 17 17 C 1.54775 * 103.21205 * 322.18174 * 16 15 14 18 18 H 1.08997 * 112.62135 * 274.66400 * 17 16 15 19 19 N 1.46986 * 108.68736 * 150.20155 * 17 16 15 20 20 C 1.36941 * 125.57477 * 65.89362 * 19 17 16 21 21 H 1.07992 * 120.00001 * 359.97438 * 20 19 17 22 22 C 1.38809 * 119.99594 * 180.02562 * 20 19 17 23 23 N 1.31616 * 120.00407 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99829 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47248 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46976 * 119.99922 * 24 22 20 27 27 H 1.48505 * 109.47287 * 239.99735 * 24 22 20 28 28 C 1.47370 * 108.84223 * 245.87073 * 19 17 16 29 29 C 1.54865 * 104.82018 * 24.69139 * 28 19 17 30 30 H 1.08995 * 109.47633 * 300.00164 * 1 2 3 31 31 H 1.08998 * 109.47088 * 60.00559 * 1 2 3 32 32 H 1.09007 * 109.47522 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47413 * 239.99433 * 2 1 3 34 34 H 1.09009 * 109.46698 * 119.99776 * 2 1 3 35 35 H 1.07997 * 119.99434 * 359.96910 * 4 3 2 36 36 H 1.07999 * 119.99432 * 179.97438 * 5 4 3 37 37 H 1.08001 * 120.00058 * 179.97438 * 6 5 4 38 38 H 1.08004 * 120.00361 * 180.23097 * 7 6 5 39 39 H 1.09003 * 109.47020 * 324.99898 * 9 8 3 40 40 H 1.08997 * 109.47092 * 204.99542 * 9 8 3 41 41 H 0.96993 * 120.00152 * 0.02562 * 12 10 9 42 42 H 1.08997 * 110.01519 * 240.75128 * 14 13 12 43 43 H 1.09005 * 110.01637 * 2.09835 * 14 13 12 44 44 H 1.08997 * 110.48865 * 143.61196 * 15 14 13 45 45 H 1.08998 * 110.49728 * 266.27590 * 15 14 13 46 46 H 1.08997 * 110.66359 * 203.75682 * 16 15 14 47 47 H 1.08997 * 110.67453 * 80.61477 * 16 15 14 48 48 H 0.97001 * 120.00797 * 180.02562 * 23 22 20 49 49 H 1.09000 * 110.36530 * 143.52909 * 28 19 17 50 50 H 1.08993 * 110.36805 * 265.85260 * 28 19 17 51 51 H 1.09005 * 110.96691 * 81.04665 * 29 28 19 52 52 H 1.08997 * 110.96963 * 204.76895 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3616 2.0376 -1.1928 5 6 2.8218 3.3408 -1.1928 6 6 2.9525 4.0278 -0.0002 7 6 2.6192 3.4127 1.1918 8 6 2.1642 2.1071 1.1924 9 6 1.8051 1.4350 2.4924 10 6 2.9839 0.6373 2.9879 11 8 4.0143 0.6171 2.3485 12 7 2.8933 -0.0528 4.1421 13 6 4.0394 -0.8278 4.6241 14 6 5.2855 0.0398 4.8552 15 6 5.6741 -0.1301 6.3380 16 6 5.0895 -1.5093 6.7268 17 6 3.7431 -1.5505 5.9645 18 1 2.9345 -1.0706 6.5156 19 7 3.4282 -2.9491 5.6402 20 6 3.1455 -3.9335 6.5492 21 1 3.1428 -3.7085 7.6055 22 6 2.8635 -5.2208 6.1130 23 7 2.8674 -5.4951 4.8258 24 14 2.4787 -6.5638 7.3531 25 1 2.5379 -6.0014 8.7262 26 1 1.1175 -7.0993 7.0963 27 1 3.4739 -7.6582 7.2224 28 6 3.4658 -3.1185 4.1767 29 6 4.4034 -1.9941 3.6718 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 2.2592 1.5009 -2.1244 36 1 3.0794 3.8225 -2.1245 37 1 3.3126 5.0460 -0.0003 38 1 2.7177 3.9506 2.1231 39 1 0.9564 0.7693 2.3350 40 1 1.5415 2.1912 3.2318 41 1 2.0694 -0.0363 4.6536 42 1 6.0998 -0.2989 4.2148 43 1 5.0566 1.0848 4.6462 44 1 6.7582 -0.1297 6.4508 45 1 5.2262 0.6584 6.9427 46 1 4.9244 -1.5677 7.8026 47 1 5.7454 -2.3133 6.3930 48 1 2.6700 -6.3946 4.5209 49 1 3.8725 -4.0962 3.9184 50 1 2.4679 -2.9983 3.7551 51 1 5.4496 -2.2783 3.7854 52 1 4.1814 -1.7368 2.6362 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991363357.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:27 Heat of formation + Delta-G solvation = -12.933084 kcal Electronic energy + Delta-G solvation = -31188.879620 eV Core-core repulsion = 27345.353982 eV Total energy + Delta-G solvation = -3843.525638 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -41.69823 -40.60338 -39.16044 -36.02590 -35.18961 -34.69333 -33.55677 -33.21593 -31.49271 -30.36150 -28.78332 -28.41213 -27.11212 -25.72359 -24.73052 -23.32147 -22.51773 -21.69504 -21.43358 -20.69687 -20.17255 -18.89071 -18.08139 -17.33800 -17.11798 -16.98601 -16.83601 -15.99356 -15.92439 -15.57997 -15.33495 -15.03727 -14.75243 -14.61652 -14.49969 -14.33848 -13.99510 -13.92859 -13.75829 -13.53635 -13.21870 -12.97662 -12.91684 -12.84829 -12.75209 -12.66784 -12.64164 -12.30145 -12.13952 -11.98334 -11.89014 -11.71182 -11.67143 -11.55418 -11.53925 -11.46128 -11.24913 -10.72606 -10.70260 -9.89282 -9.64935 -9.44108 -8.85309 -7.72783 -5.17505 0.46876 0.55404 1.48158 1.48745 1.58677 1.75244 2.25745 2.51760 2.94380 3.36523 3.40032 3.65435 3.70671 3.87218 3.96498 3.97872 4.01580 4.10928 4.11648 4.31818 4.36770 4.37177 4.43377 4.47813 4.48399 4.54645 4.59651 4.65647 4.68636 4.72291 4.77962 4.81094 4.91897 4.98026 5.02647 5.08098 5.09348 5.16583 5.19066 5.23099 5.26207 5.32638 5.37342 5.49317 5.52266 5.62687 5.65876 5.66195 5.74000 5.79637 5.85986 6.18337 6.31925 6.67876 7.13097 7.37962 7.81540 8.45619 9.28597 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015128 B = 0.003152 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.415328 B = 8881.225100 C =10147.836659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.088 4.088 3 C -0.079 4.079 4 C -0.133 4.133 5 C -0.125 4.125 6 C -0.133 4.133 7 C -0.116 4.116 8 C -0.076 4.076 9 C -0.101 4.101 10 C 0.516 3.484 11 O -0.563 6.563 12 N -0.705 5.705 13 C 0.173 3.827 14 C -0.102 4.102 15 C -0.110 4.110 16 C -0.125 4.125 17 C 0.154 3.846 18 H 0.059 0.941 19 N -0.611 5.611 20 C -0.221 4.221 21 H 0.085 0.915 22 C -0.070 4.070 23 N -0.951 5.951 24 Si 0.975 3.025 25 H -0.264 1.264 26 H -0.296 1.296 27 H -0.297 1.297 28 C 0.165 3.835 29 C -0.129 4.129 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.049 0.951 35 H 0.130 0.870 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.134 0.866 39 H 0.111 0.889 40 H 0.129 0.871 41 H 0.409 0.591 42 H 0.056 0.944 43 H 0.066 0.934 44 H 0.076 0.924 45 H 0.083 0.917 46 H 0.066 0.934 47 H 0.047 0.953 48 H 0.243 0.757 49 H 0.069 0.931 50 H -0.016 1.016 51 H 0.059 0.941 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.682 20.095 -6.401 21.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.125 4.125 3 C -0.079 4.079 4 C -0.151 4.151 5 C -0.142 4.142 6 C -0.151 4.151 7 C -0.134 4.134 8 C -0.076 4.076 9 C -0.141 4.141 10 C 0.304 3.696 11 O -0.441 6.441 12 N -0.356 5.356 13 C 0.086 3.914 14 C -0.141 4.141 15 C -0.148 4.148 16 C -0.165 4.165 17 C 0.047 3.953 18 H 0.077 0.923 19 N -0.335 5.335 20 C -0.350 4.350 21 H 0.103 0.897 22 C -0.262 4.262 23 N -0.601 5.601 24 Si 0.805 3.195 25 H -0.188 1.188 26 H -0.223 1.223 27 H -0.224 1.224 28 C 0.040 3.960 29 C -0.168 4.168 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.148 0.852 36 H 0.159 0.841 37 H 0.160 0.840 38 H 0.152 0.848 39 H 0.129 0.871 40 H 0.147 0.853 41 H 0.245 0.755 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.101 0.899 46 H 0.085 0.915 47 H 0.066 0.934 48 H 0.053 0.947 49 H 0.087 0.913 50 H 0.002 0.998 51 H 0.078 0.922 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.021 19.862 -6.830 21.100 hybrid contribution -0.541 -1.476 0.468 1.641 sum -2.563 18.386 -6.361 19.623 Atomic orbital electron populations 1.21727 0.93237 1.02216 1.02647 1.20532 0.97263 0.92660 1.02076 1.19865 0.98802 0.95838 0.93366 1.21228 1.00366 0.95912 0.97573 1.21407 0.99190 0.94539 0.99112 1.21380 1.00383 1.00990 0.92320 1.21238 0.98609 0.94325 0.99227 1.19289 1.00542 0.94517 0.93282 1.20779 0.96490 1.00466 0.96318 1.20908 0.89754 0.79094 0.79893 1.90694 1.32526 1.64047 1.56852 1.45875 1.16415 1.48983 1.24345 1.21388 0.86728 0.90076 0.93217 1.22158 0.95612 0.99075 0.97265 1.22308 1.01132 0.96625 0.94704 1.22793 0.96728 0.97044 0.99897 1.22067 0.95650 0.84729 0.92838 0.92294 1.44724 1.81795 1.04792 1.02233 1.19437 1.38047 0.88511 0.89052 0.89682 1.25575 1.03164 0.99726 0.97724 1.70070 1.57231 1.19284 1.13547 0.85041 0.76567 0.79148 0.78777 1.18824 1.22318 1.22430 1.21586 0.93786 0.97434 0.83204 1.23105 0.99329 0.96033 0.98359 0.92029 0.91598 0.92157 0.91215 0.93247 0.85184 0.84090 0.84022 0.84797 0.87078 0.85326 0.75534 0.92482 0.91521 0.90576 0.89873 0.91498 0.93426 0.94673 0.91316 0.99798 0.92205 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.72 71.98 0.70 -2.07 16 2 C -0.09 -2.15 5.38 29.85 0.16 -1.99 16 3 C -0.08 -1.94 5.13 -19.87 -0.10 -2.04 16 4 C -0.13 -2.92 9.68 22.27 0.22 -2.70 16 5 C -0.12 -2.40 10.05 22.27 0.22 -2.18 16 6 C -0.13 -2.54 10.05 22.27 0.22 -2.31 16 7 C -0.12 -2.45 9.68 22.27 0.22 -2.24 16 8 C -0.08 -1.80 4.37 -19.87 -0.09 -1.89 16 9 C -0.10 -2.17 5.16 29.10 0.15 -2.02 16 10 C 0.52 15.09 6.20 87.66 0.54 15.63 16 11 O -0.56 -20.63 13.91 -3.04 -0.04 -20.68 16 12 N -0.70 -20.84 5.25 -415.78 -2.18 -23.02 16 13 C 0.17 6.04 0.75 5.18 0.00 6.04 16 14 C -0.10 -3.17 5.23 31.21 0.16 -3.01 16 15 C -0.11 -2.97 6.84 31.61 0.22 -2.75 16 16 C -0.12 -4.30 6.21 31.80 0.20 -4.10 16 17 C 0.15 5.89 3.66 46.24 0.17 6.06 16 18 H 0.06 2.14 7.98 -2.39 -0.02 2.12 16 19 N -0.61 -30.09 3.03 -663.71 -2.01 -32.10 16 20 C -0.22 -11.89 10.01 84.03 0.84 -11.05 16 21 H 0.09 4.34 7.83 -2.91 -0.02 4.31 16 22 C -0.07 -3.90 5.49 84.86 0.47 -3.43 16 23 N -0.95 -56.71 10.07 21.65 0.22 -56.49 16 24 Si 0.98 45.20 29.55 68.60 2.03 47.23 16 25 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 26 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 27 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 28 C 0.17 8.35 5.91 86.85 0.51 8.86 16 29 C -0.13 -5.44 5.75 31.88 0.18 -5.26 16 30 H 0.06 1.12 6.80 -2.39 -0.02 1.10 16 31 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.07 1.66 8.05 -2.39 -0.02 1.65 16 34 H 0.05 1.45 6.42 -2.38 -0.02 1.43 16 35 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 36 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 37 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 38 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 39 H 0.11 2.21 5.62 -2.39 -0.01 2.20 16 40 H 0.13 1.94 8.05 -2.39 -0.02 1.92 16 41 H 0.41 10.35 8.49 -92.71 -0.79 9.57 16 42 H 0.06 1.91 7.37 -2.39 -0.02 1.90 16 43 H 0.07 1.98 7.43 -2.38 -0.02 1.96 16 44 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 47 H 0.05 1.89 8.09 -2.39 -0.02 1.88 16 48 H 0.24 14.21 8.31 -92.71 -0.77 13.44 16 49 H 0.07 4.03 5.82 -2.39 -0.01 4.01 16 50 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 51 H 0.06 2.57 7.62 -2.38 -0.02 2.56 16 52 H 0.06 2.51 6.82 -2.39 -0.02 2.50 16 Total: -1.00 -69.34 400.18 3.13 -66.21 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: 0.12 Total: 31.28 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: 5.00 Total: -12.43 kcal Atomic # 7 Polarization: -107.63 SS G_CDS: -3.97 Total: -111.60 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.04 Total: -20.68 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -69.34 3.13 -66.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991363357.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.274 kcal (2) G-P(sol) polarization free energy of solvation -69.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds