Wall clock time and date at job start Wed Apr 1 2020 03:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50697 * 109.47273 * 2 1 4 4 C 1.38256 * 120.00133 * 89.99916 * 3 2 1 5 5 C 1.38208 * 120.00130 * 180.02562 * 4 3 2 6 6 C 1.38250 * 120.00119 * 0.02562 * 5 4 3 7 7 C 1.38212 * 120.00236 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.00450 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.47319 * 89.99891 * 8 7 6 10 10 O 1.21281 * 120.00091 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99676 * 180.02562 * 9 8 7 12 12 C 1.46508 * 119.99586 * 179.97438 * 11 9 8 13 13 C 1.51361 * 111.67435 * 291.93405 * 12 11 9 14 14 C 1.55689 * 104.23123 * 276.82775 * 13 12 11 15 15 C 1.56280 * 105.93580 * 352.17277 * 14 13 12 16 16 C 1.50518 * 101.75878 * 335.74392 * 15 14 13 17 17 H 1.09003 * 108.13218 * 293.75480 * 16 15 14 18 18 N 1.42698 * 128.16508 * 161.32809 * 16 15 14 19 19 C 1.36930 * 127.10752 * 28.94002 * 18 16 15 20 20 H 1.07997 * 119.99651 * 355.78211 * 19 18 16 21 21 C 1.38807 * 120.00274 * 175.78844 * 19 18 16 22 22 N 1.31622 * 120.00005 * 211.97559 * 21 19 18 23 23 Si 1.86800 * 120.00340 * 31.96656 * 21 19 18 24 24 H 1.48494 * 109.47373 * 275.35101 * 23 21 19 25 25 H 1.48505 * 109.46667 * 35.35376 * 23 21 19 26 26 H 1.48504 * 109.47084 * 155.35009 * 23 21 19 27 27 C 1.49302 * 105.79316 * 209.20471 * 18 16 15 28 28 C 1.52132 * 111.49345 * 71.47179 * 12 11 9 29 29 C 1.38210 * 120.00244 * 270.27699 * 3 2 1 30 30 H 1.08999 * 109.47264 * 300.00118 * 1 2 3 31 31 H 1.09006 * 109.47541 * 59.99655 * 1 2 3 32 32 H 1.09002 * 109.47491 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47264 * 239.99882 * 2 1 3 34 34 H 1.08997 * 109.46989 * 120.00233 * 2 1 3 35 35 H 1.08000 * 119.99758 * 0.02562 * 4 3 2 36 36 H 1.08007 * 119.99791 * 179.97438 * 5 4 3 37 37 H 1.08003 * 120.00462 * 179.97438 * 6 5 4 38 38 H 1.09005 * 109.46871 * 329.99938 * 8 7 6 39 39 H 1.08999 * 109.47028 * 210.00256 * 8 7 6 40 40 H 0.96996 * 120.00173 * 359.97438 * 11 9 8 41 41 H 1.09000 * 111.07959 * 157.92156 * 13 12 11 42 42 H 1.09001 * 110.19796 * 35.29954 * 13 12 11 43 43 H 1.08999 * 110.15993 * 233.05872 * 14 13 12 44 44 H 1.08998 * 110.21993 * 111.31993 * 14 13 12 45 45 H 1.09000 * 110.97368 * 217.62550 * 15 14 13 46 46 H 1.09006 * 110.96897 * 93.85563 * 15 14 13 47 47 H 0.97004 * 119.99401 * 354.97036 * 22 21 19 48 48 H 1.08997 * 110.05539 * 127.65561 * 27 18 16 49 49 H 1.09000 * 110.04757 * 249.13723 * 27 18 16 50 50 H 1.09002 * 111.15091 * 192.00272 * 28 12 11 51 51 H 1.09006 * 111.14822 * 316.18006 * 28 12 11 52 52 H 1.08009 * 119.99873 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1973 5 6 2.7230 3.3758 1.1973 6 6 2.9524 4.0278 0.0001 7 6 2.7221 3.3764 -1.1969 8 6 2.9716 4.0873 -2.5020 9 6 4.3949 3.8523 -2.9380 10 8 5.1340 3.1746 -2.2559 11 7 4.8466 4.3961 -4.0855 12 6 6.2305 4.1680 -4.5091 13 6 7.2170 4.8546 -3.5891 14 6 7.2717 6.3201 -4.1118 15 6 6.4519 6.3320 -5.4422 16 6 6.5436 4.8924 -5.8720 17 1 7.5838 4.6769 -6.1162 18 7 5.7148 4.1950 -6.8009 19 6 5.0494 4.7248 -7.8740 20 1 5.0687 5.7904 -8.0488 21 6 4.3500 3.8924 -8.7370 22 7 4.2523 4.1999 -10.0130 23 14 3.5475 2.3356 -8.0874 24 1 4.5480 1.2388 -8.0566 25 1 3.0363 2.5782 -6.7144 26 1 2.4201 1.9525 -8.9749 27 6 5.7177 2.7694 -6.3574 28 6 6.4420 2.7352 -4.9746 29 6 2.2572 2.0743 -1.1969 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8932 -0.5139 0.8899 35 1 2.0831 1.5633 2.1326 36 1 2.9026 3.8850 2.1327 37 1 3.3117 5.0464 0.0000 38 1 2.8035 5.1564 -2.3713 39 1 2.2907 3.7026 -3.2613 40 1 4.2556 4.9384 -4.6309 41 1 8.2014 4.3909 -3.6537 42 1 6.8532 4.8306 -2.5619 43 1 8.3041 6.6120 -4.3041 44 1 6.8196 6.9960 -3.3859 45 1 6.9136 6.9893 -6.1791 46 1 5.4164 6.6195 -5.2598 47 1 4.6056 5.0433 -10.3370 48 1 4.6945 2.4080 -6.2541 49 1 6.2605 2.1556 -7.0761 50 1 7.5027 2.5106 -5.0869 51 1 5.9621 2.0272 -4.2987 52 1 2.0733 1.5665 -2.1323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991449556.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:33 Heat of formation + Delta-G solvation = 20.197533 kcal Electronic energy + Delta-G solvation = -31028.214300 eV Core-core repulsion = 27186.125314 eV Total energy + Delta-G solvation = -3842.088987 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.72834 -39.64076 -38.08115 -34.70956 -34.49042 -33.15110 -32.47907 -32.00143 -30.16728 -29.57499 -27.65282 -27.18975 -26.10638 -24.05727 -23.50069 -22.38335 -21.46567 -21.04715 -20.04544 -19.38727 -18.87252 -17.19497 -16.90329 -16.50006 -15.89021 -15.84113 -15.19287 -15.07220 -14.94448 -14.52592 -14.28945 -13.86798 -13.84589 -13.66494 -13.52975 -13.22749 -13.12331 -12.92716 -12.57610 -12.21087 -12.15475 -12.00702 -11.88782 -11.82881 -11.51012 -11.36265 -11.13175 -10.97042 -10.94022 -10.91481 -10.84475 -10.72138 -10.34781 -10.26635 -9.82140 -9.70441 -9.33783 -9.23505 -8.78423 -8.61764 -8.60286 -8.37433 -7.14549 -6.43618 -3.18477 1.32011 1.39230 2.95803 3.39226 3.42283 3.44437 3.61894 3.86323 4.36735 4.54362 4.58760 4.62797 4.78484 4.98695 5.00935 5.06110 5.07329 5.17602 5.19274 5.20591 5.24587 5.35173 5.38675 5.44732 5.52510 5.53119 5.55517 5.59481 5.66961 5.73013 5.74977 5.83347 5.87166 5.96343 6.04679 6.05757 6.08625 6.14659 6.20944 6.28071 6.34699 6.40677 6.42992 6.49156 6.54211 6.54815 6.60955 6.73699 6.87038 6.99316 7.07032 7.67797 7.93431 8.25808 8.59571 8.95710 9.60113 10.26078 11.07461 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011638 B = 0.003620 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.341546 B = 7732.712876 C = 9345.338565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.082 4.082 4 C -0.122 4.122 5 C -0.118 4.118 6 C -0.111 4.111 7 C -0.052 4.052 8 C -0.108 4.108 9 C 0.515 3.485 10 O -0.539 6.539 11 N -0.696 5.696 12 C 0.128 3.872 13 C -0.110 4.110 14 C -0.116 4.116 15 C -0.113 4.113 16 C 0.163 3.837 17 H 0.029 0.971 18 N -0.590 5.590 19 C -0.340 4.340 20 H 0.081 0.919 21 C -0.014 4.014 22 N -0.909 5.909 23 Si 1.061 2.939 24 H -0.293 1.293 25 H -0.294 1.294 26 H -0.300 1.300 27 C 0.110 3.890 28 C -0.121 4.121 29 C -0.102 4.102 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.404 0.596 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.265 0.735 48 H 0.041 0.959 49 H 0.043 0.957 50 H 0.076 0.924 51 H 0.073 0.927 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.052 -1.072 20.812 21.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.140 4.140 5 C -0.136 4.136 6 C -0.129 4.129 7 C -0.053 4.053 8 C -0.148 4.148 9 C 0.301 3.699 10 O -0.416 6.416 11 N -0.347 5.347 12 C 0.040 3.960 13 C -0.149 4.149 14 C -0.155 4.155 15 C -0.152 4.152 16 C 0.053 3.947 17 H 0.046 0.954 18 N -0.315 5.315 19 C -0.466 4.466 20 H 0.098 0.902 21 C -0.215 4.215 22 N -0.549 5.549 23 Si 0.895 3.105 24 H -0.221 1.221 25 H -0.222 1.222 26 H -0.228 1.228 27 C -0.013 4.013 28 C -0.160 4.160 29 C -0.120 4.120 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.239 0.761 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.075 0.925 48 H 0.059 0.941 49 H 0.061 0.939 50 H 0.094 0.906 51 H 0.092 0.908 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.423 -2.848 20.680 21.154 hybrid contribution 0.519 1.656 0.169 1.744 sum -2.905 -1.192 20.849 21.084 Atomic orbital electron populations 1.21746 0.94787 1.01607 1.02180 1.20536 0.96083 0.92795 1.02857 1.19814 0.99221 0.96061 0.93073 1.20945 1.00808 0.95026 0.97271 1.21026 0.99842 0.94983 0.97723 1.20927 1.00013 0.99934 0.91987 1.19257 0.98151 0.94266 0.93613 1.20727 0.95571 1.02338 0.96192 1.20344 0.88965 0.79642 0.80995 1.90676 1.57954 1.38812 1.54146 1.45758 1.13087 1.52814 1.23065 1.21556 0.81343 0.96283 0.96816 1.21872 0.98607 0.95068 0.99320 1.22821 0.99846 0.96374 0.96417 1.21836 1.00067 0.97149 0.96134 1.20819 0.95032 0.91974 0.86868 0.95386 1.44039 1.55623 1.02164 1.29692 1.19895 1.31299 0.94139 1.01257 0.90161 1.25555 0.99505 1.03312 0.93177 1.70919 1.50118 1.22817 1.11004 0.83871 0.76779 0.76131 0.73699 1.22083 1.22246 1.22751 1.22579 0.98229 0.87303 0.93224 1.22458 1.00828 0.96081 0.96657 1.20871 0.99517 0.94008 0.97647 0.92682 0.92466 0.92483 0.90975 0.91172 0.86502 0.86313 0.86455 0.88200 0.88025 0.76070 0.91006 0.91124 0.91879 0.92207 0.91694 0.91678 0.92502 0.94108 0.93865 0.90581 0.90833 0.86334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.89 37.15 0.37 -0.82 16 2 C -0.09 -0.80 6.06 -27.89 -0.17 -0.97 16 3 C -0.08 -0.94 5.13 -104.63 -0.54 -1.48 16 4 C -0.12 -1.32 9.70 -39.59 -0.38 -1.71 16 5 C -0.12 -1.29 10.05 -39.59 -0.40 -1.69 16 6 C -0.11 -1.33 9.70 -39.59 -0.38 -1.71 16 7 C -0.05 -0.68 4.37 -104.62 -0.46 -1.14 16 8 C -0.11 -1.36 5.83 -29.04 -0.17 -1.53 16 9 C 0.51 8.13 7.17 -10.99 -0.08 8.05 16 10 O -0.54 -9.97 14.19 5.56 0.08 -9.89 16 11 N -0.70 -11.36 4.40 -46.51 -0.20 -11.57 16 12 C 0.13 2.19 0.38 -130.64 -0.05 2.14 16 13 C -0.11 -1.64 6.06 -26.13 -0.16 -1.80 16 14 C -0.12 -1.57 6.93 -23.54 -0.16 -1.74 16 15 C -0.11 -1.84 6.45 -26.21 -0.17 -2.01 16 16 C 0.16 3.13 2.65 -68.72 -0.18 2.95 16 17 H 0.03 0.57 7.96 -51.93 -0.41 0.16 16 18 N -0.59 -13.65 3.11 -162.74 -0.51 -14.16 16 19 C -0.34 -9.13 10.42 -15.06 -0.16 -9.29 16 20 H 0.08 2.27 8.06 -52.49 -0.42 1.84 16 21 C -0.01 -0.38 5.46 -17.43 -0.10 -0.48 16 22 N -0.91 -27.57 13.70 55.49 0.76 -26.81 16 23 Si 1.06 26.12 24.78 -169.99 -4.21 21.90 16 24 H -0.29 -7.00 6.62 56.52 0.37 -6.62 16 25 H -0.29 -6.78 6.50 56.52 0.37 -6.41 16 26 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 27 C 0.11 2.40 4.81 -0.80 0.00 2.39 16 28 C -0.12 -2.22 6.20 -25.49 -0.16 -2.38 16 29 C -0.10 -1.32 9.36 -39.58 -0.37 -1.69 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 34 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 35 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 36 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 37 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 38 H 0.10 1.02 8.09 -51.93 -0.42 0.60 16 39 H 0.10 1.20 8.08 -51.93 -0.42 0.79 16 40 H 0.40 6.61 7.74 -40.82 -0.32 6.29 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.07 1.11 6.85 -51.93 -0.36 0.76 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.06 1.06 7.28 -51.93 -0.38 0.68 16 47 H 0.26 7.93 8.73 -40.82 -0.36 7.57 16 48 H 0.04 0.93 3.87 -51.93 -0.20 0.73 16 49 H 0.04 0.98 7.55 -51.93 -0.39 0.59 16 50 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 51 H 0.07 1.37 7.19 -51.93 -0.37 1.00 16 52 H 0.12 1.48 8.06 -52.48 -0.42 1.05 16 LS Contribution 401.99 15.07 6.06 6.06 Total: -1.00 -31.68 401.99 -10.56 -42.24 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -8.82 Total: 7.11 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -3.72 Total: -14.89 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: 0.05 Total: -52.53 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.08 Total: -9.89 kcal Atomic # 14 Polarization: 26.12 SS G_CDS: -4.21 Total: 21.90 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.68 -10.56 -42.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991449556.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.436 kcal (2) G-P(sol) polarization free energy of solvation -31.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds