Wall clock time and date at job start Wed Apr 1 2020 03:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50697 * 109.47273 * 2 1 4 4 C 1.38256 * 120.00133 * 89.99916 * 3 2 1 5 5 C 1.38208 * 120.00130 * 180.02562 * 4 3 2 6 6 C 1.38250 * 120.00119 * 0.02562 * 5 4 3 7 7 C 1.38212 * 120.00236 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.00450 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.47319 * 89.99891 * 8 7 6 10 10 O 1.21281 * 120.00091 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99676 * 180.02562 * 9 8 7 12 12 C 1.46508 * 119.99586 * 179.97438 * 11 9 8 13 13 C 1.51361 * 111.67435 * 291.93405 * 12 11 9 14 14 C 1.55689 * 104.23123 * 276.82775 * 13 12 11 15 15 C 1.56280 * 105.93580 * 352.17277 * 14 13 12 16 16 C 1.50518 * 101.75878 * 335.74392 * 15 14 13 17 17 H 1.09003 * 108.13218 * 293.75480 * 16 15 14 18 18 N 1.42698 * 128.16508 * 161.32809 * 16 15 14 19 19 C 1.36930 * 127.10752 * 28.94002 * 18 16 15 20 20 H 1.07997 * 119.99651 * 355.78211 * 19 18 16 21 21 C 1.38807 * 120.00274 * 175.78844 * 19 18 16 22 22 N 1.31622 * 120.00005 * 211.97559 * 21 19 18 23 23 Si 1.86800 * 120.00340 * 31.96656 * 21 19 18 24 24 H 1.48494 * 109.47373 * 275.35101 * 23 21 19 25 25 H 1.48505 * 109.46667 * 35.35376 * 23 21 19 26 26 H 1.48504 * 109.47084 * 155.35009 * 23 21 19 27 27 C 1.49302 * 105.79316 * 209.20471 * 18 16 15 28 28 C 1.52132 * 111.49345 * 71.47179 * 12 11 9 29 29 C 1.38210 * 120.00244 * 270.27699 * 3 2 1 30 30 H 1.08999 * 109.47264 * 300.00118 * 1 2 3 31 31 H 1.09006 * 109.47541 * 59.99655 * 1 2 3 32 32 H 1.09002 * 109.47491 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47264 * 239.99882 * 2 1 3 34 34 H 1.08997 * 109.46989 * 120.00233 * 2 1 3 35 35 H 1.08000 * 119.99758 * 0.02562 * 4 3 2 36 36 H 1.08007 * 119.99791 * 179.97438 * 5 4 3 37 37 H 1.08003 * 120.00462 * 179.97438 * 6 5 4 38 38 H 1.09005 * 109.46871 * 329.99938 * 8 7 6 39 39 H 1.08999 * 109.47028 * 210.00256 * 8 7 6 40 40 H 0.96996 * 120.00173 * 359.97438 * 11 9 8 41 41 H 1.09000 * 111.07959 * 157.92156 * 13 12 11 42 42 H 1.09001 * 110.19796 * 35.29954 * 13 12 11 43 43 H 1.08999 * 110.15993 * 233.05872 * 14 13 12 44 44 H 1.08998 * 110.21993 * 111.31993 * 14 13 12 45 45 H 1.09000 * 110.97368 * 217.62550 * 15 14 13 46 46 H 1.09006 * 110.96897 * 93.85563 * 15 14 13 47 47 H 0.97004 * 119.99401 * 354.97036 * 22 21 19 48 48 H 1.08997 * 110.05539 * 127.65561 * 27 18 16 49 49 H 1.09000 * 110.04757 * 249.13723 * 27 18 16 50 50 H 1.09002 * 111.15091 * 192.00272 * 28 12 11 51 51 H 1.09006 * 111.14822 * 316.18006 * 28 12 11 52 52 H 1.08009 * 119.99873 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1973 5 6 2.7230 3.3758 1.1973 6 6 2.9524 4.0278 0.0001 7 6 2.7221 3.3764 -1.1969 8 6 2.9716 4.0873 -2.5020 9 6 4.3949 3.8523 -2.9380 10 8 5.1340 3.1746 -2.2559 11 7 4.8466 4.3961 -4.0855 12 6 6.2305 4.1680 -4.5091 13 6 7.2170 4.8546 -3.5891 14 6 7.2717 6.3201 -4.1118 15 6 6.4519 6.3320 -5.4422 16 6 6.5436 4.8924 -5.8720 17 1 7.5838 4.6769 -6.1162 18 7 5.7148 4.1950 -6.8009 19 6 5.0494 4.7248 -7.8740 20 1 5.0687 5.7904 -8.0488 21 6 4.3500 3.8924 -8.7370 22 7 4.2523 4.1999 -10.0130 23 14 3.5475 2.3356 -8.0874 24 1 4.5480 1.2388 -8.0566 25 1 3.0363 2.5782 -6.7144 26 1 2.4201 1.9525 -8.9749 27 6 5.7177 2.7694 -6.3574 28 6 6.4420 2.7352 -4.9746 29 6 2.2572 2.0743 -1.1969 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8932 -0.5139 0.8899 35 1 2.0831 1.5633 2.1326 36 1 2.9026 3.8850 2.1327 37 1 3.3117 5.0464 0.0000 38 1 2.8035 5.1564 -2.3713 39 1 2.2907 3.7026 -3.2613 40 1 4.2556 4.9384 -4.6309 41 1 8.2014 4.3909 -3.6537 42 1 6.8532 4.8306 -2.5619 43 1 8.3041 6.6120 -4.3041 44 1 6.8196 6.9960 -3.3859 45 1 6.9136 6.9893 -6.1791 46 1 5.4164 6.6195 -5.2598 47 1 4.6056 5.0433 -10.3370 48 1 4.6945 2.4080 -6.2541 49 1 6.2605 2.1556 -7.0761 50 1 7.5027 2.5106 -5.0869 51 1 5.9621 2.0272 -4.2987 52 1 2.0733 1.5665 -2.1323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991449556.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:31 Heat of formation + Delta-G solvation = 2.949131 kcal Electronic energy + Delta-G solvation = -31028.962247 eV Core-core repulsion = 27186.125314 eV Total energy + Delta-G solvation = -3842.836934 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.10491 -40.60611 -39.32331 -36.35705 -35.31004 -34.52357 -34.02981 -33.26775 -31.73533 -30.38352 -28.74727 -28.68266 -27.47823 -25.37447 -24.79665 -23.43044 -22.79299 -22.19424 -21.17568 -20.83887 -20.22143 -19.12790 -18.11349 -17.47482 -17.23914 -16.87849 -16.74330 -16.30609 -16.19172 -15.74028 -15.54932 -15.25429 -15.13592 -14.87493 -14.62660 -14.46050 -14.13231 -13.99391 -13.78516 -13.71612 -13.49284 -13.21462 -12.92507 -12.82091 -12.75978 -12.63336 -12.57684 -12.39104 -12.16305 -12.13596 -11.94259 -11.79095 -11.69726 -11.62747 -11.49852 -11.19292 -11.05941 -10.67913 -10.48734 -9.94877 -9.66899 -9.47751 -9.12078 -8.66150 -5.32884 0.44554 0.52585 1.38678 1.44583 1.64405 1.73750 2.27557 2.50415 2.83542 2.92296 3.11412 3.47110 3.69096 3.75482 3.82779 3.95764 3.99661 4.01246 4.13791 4.21639 4.23758 4.28040 4.31360 4.37501 4.38135 4.50109 4.54704 4.57869 4.60123 4.69811 4.70229 4.76921 4.78297 4.84837 4.88159 4.94337 5.01931 5.04555 5.08105 5.12440 5.16774 5.20980 5.23079 5.32179 5.37598 5.44921 5.58939 5.67797 5.68721 5.74398 5.75476 6.09269 6.15830 6.65941 6.80523 7.34150 7.55337 8.22792 8.87118 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011638 B = 0.003620 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.341546 B = 7732.712876 C = 9345.338565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.090 4.090 4 C -0.128 4.128 5 C -0.121 4.121 6 C -0.124 4.124 7 C -0.069 4.069 8 C -0.103 4.103 9 C 0.517 3.483 10 O -0.565 6.565 11 N -0.699 5.699 12 C 0.138 3.862 13 C -0.104 4.104 14 C -0.102 4.102 15 C -0.111 4.111 16 C 0.147 3.853 17 H 0.025 0.975 18 N -0.604 5.604 19 C -0.314 4.314 20 H 0.059 0.941 21 C -0.068 4.068 22 N -0.948 5.948 23 Si 1.098 2.902 24 H -0.284 1.284 25 H -0.272 1.272 26 H -0.308 1.308 27 C 0.107 3.893 28 C -0.113 4.113 29 C -0.125 4.125 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.140 0.860 36 H 0.143 0.857 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.106 0.894 40 H 0.403 0.597 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.060 0.940 46 H 0.063 0.937 47 H 0.252 0.748 48 H 0.034 0.966 49 H 0.030 0.970 50 H 0.092 0.908 51 H 0.071 0.929 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.833 -1.074 24.143 24.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 C -0.090 4.090 4 C -0.146 4.146 5 C -0.139 4.139 6 C -0.142 4.142 7 C -0.069 4.069 8 C -0.143 4.143 9 C 0.304 3.696 10 O -0.444 6.444 11 N -0.350 5.350 12 C 0.050 3.950 13 C -0.143 4.143 14 C -0.140 4.140 15 C -0.150 4.150 16 C 0.038 3.962 17 H 0.043 0.957 18 N -0.329 5.329 19 C -0.442 4.442 20 H 0.077 0.923 21 C -0.264 4.264 22 N -0.592 5.592 23 Si 0.928 3.072 24 H -0.212 1.212 25 H -0.199 1.199 26 H -0.237 1.237 27 C -0.017 4.017 28 C -0.152 4.152 29 C -0.143 4.143 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.158 0.842 36 H 0.161 0.839 37 H 0.147 0.853 38 H 0.143 0.857 39 H 0.124 0.876 40 H 0.239 0.761 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.100 0.900 44 H 0.096 0.904 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.061 0.939 48 H 0.052 0.948 49 H 0.048 0.952 50 H 0.111 0.889 51 H 0.090 0.910 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.184 -2.836 24.061 24.436 hybrid contribution 0.516 1.699 -0.822 1.957 sum -2.668 -1.137 23.239 23.420 Atomic orbital electron populations 1.21716 0.93879 1.02402 1.01947 1.20578 0.96834 0.91671 1.03178 1.20104 0.98878 0.97024 0.92987 1.21277 1.00144 0.95214 0.97920 1.21379 0.98945 0.95153 0.98419 1.21172 1.00214 1.00680 0.92088 1.19380 0.98945 0.94513 0.94076 1.20735 0.93260 1.03976 0.96279 1.20812 0.89924 0.78643 0.80202 1.90660 1.59006 1.39923 1.54853 1.45819 1.12823 1.52984 1.23342 1.21510 0.82566 0.94970 0.95974 1.21858 0.98348 0.95659 0.98423 1.22745 1.00569 0.95791 0.94868 1.21850 1.00639 0.94952 0.97539 1.21044 0.93799 0.94235 0.87156 0.95726 1.43997 1.55466 1.03486 1.29980 1.19790 1.29505 0.93125 1.01790 0.92297 1.26543 1.00721 1.06150 0.92994 1.71025 1.52796 1.22941 1.12410 0.83385 0.75962 0.73838 0.74035 1.21155 1.19882 1.23677 1.22609 0.98064 0.86162 0.94867 1.22418 1.01371 0.97048 0.94357 1.21010 1.00733 0.94474 0.98104 0.92204 0.93388 0.91182 0.91607 0.89880 0.84239 0.83914 0.85259 0.85741 0.87590 0.76128 0.89888 0.91436 0.90033 0.90370 0.92125 0.91840 0.93858 0.94849 0.95232 0.88906 0.91009 0.86980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.89 71.98 0.71 -1.37 16 2 C -0.09 -1.47 6.06 29.84 0.18 -1.29 16 3 C -0.09 -1.95 5.13 -19.87 -0.10 -2.05 16 4 C -0.13 -2.47 9.70 22.27 0.22 -2.26 16 5 C -0.12 -2.35 10.05 22.27 0.22 -2.13 16 6 C -0.12 -2.73 9.70 22.27 0.22 -2.51 16 7 C -0.07 -1.69 4.37 -19.87 -0.09 -1.78 16 8 C -0.10 -2.42 5.83 29.10 0.17 -2.25 16 9 C 0.52 15.44 7.17 87.66 0.63 16.07 16 10 O -0.57 -20.03 14.19 -3.03 -0.04 -20.07 16 11 N -0.70 -21.60 4.40 -419.46 -1.84 -23.45 16 12 C 0.14 4.45 0.38 4.37 0.00 4.45 16 13 C -0.10 -2.81 6.06 30.99 0.19 -2.62 16 14 C -0.10 -2.41 6.93 32.66 0.23 -2.19 16 15 C -0.11 -3.42 6.45 30.93 0.20 -3.22 16 16 C 0.15 5.44 2.65 46.47 0.12 5.56 16 17 H 0.03 0.97 7.96 -2.39 -0.02 0.95 16 18 N -0.60 -27.76 3.11 -668.79 -2.08 -29.84 16 19 C -0.31 -17.14 10.42 84.03 0.88 -16.26 16 20 H 0.06 3.42 8.06 -2.91 -0.02 3.39 16 21 C -0.07 -3.95 5.46 84.86 0.46 -3.48 16 22 N -0.95 -59.35 13.70 21.65 0.30 -59.05 16 23 Si 1.10 53.44 24.78 68.60 1.70 55.14 16 24 H -0.28 -13.31 6.62 99.48 0.66 -12.65 16 25 H -0.27 -12.07 6.50 99.48 0.65 -11.42 16 26 H -0.31 -15.34 7.11 99.48 0.71 -14.63 16 27 C 0.11 4.55 4.81 86.93 0.42 4.97 16 28 C -0.11 -3.96 6.20 31.40 0.19 -3.77 16 29 C -0.13 -3.14 9.36 22.27 0.21 -2.93 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 1.20 8.09 -2.39 -0.02 1.18 16 34 H 0.08 1.20 8.09 -2.39 -0.02 1.18 16 35 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 36 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 38 H 0.12 2.25 8.09 -2.38 -0.02 2.23 16 39 H 0.11 2.38 8.08 -2.39 -0.02 2.36 16 40 H 0.40 12.61 7.74 -92.71 -0.72 11.89 16 41 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.07 1.92 6.85 -2.39 -0.02 1.90 16 43 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.06 1.96 7.28 -2.38 -0.02 1.94 16 47 H 0.25 15.76 8.73 -92.71 -0.81 14.95 16 48 H 0.03 1.49 3.87 -2.39 -0.01 1.48 16 49 H 0.03 1.34 7.55 -2.39 -0.02 1.32 16 50 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 51 H 0.07 2.56 7.19 -2.38 -0.02 2.55 16 52 H 0.11 2.81 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -69.26 401.99 3.12 -66.14 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: 0.04 Total: 30.20 kcal Atomic # 6 Polarization: -24.12 SS G_CDS: 5.06 Total: -19.06 kcal Atomic # 7 Polarization: -108.71 SS G_CDS: -3.63 Total: -112.34 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.04 Total: -20.07 kcal Atomic # 14 Polarization: 53.44 SS G_CDS: 1.70 Total: 55.14 kcal Total: -69.26 3.12 -66.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991449556.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.088 kcal (2) G-P(sol) polarization free energy of solvation -69.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds