Wall clock time and date at job start Wed Apr 1 2020 03:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47008 * 2 1 4 4 C 1.38253 * 119.99890 * 270.01705 * 3 2 1 5 5 C 1.38212 * 119.99859 * 179.97438 * 4 3 2 6 6 C 1.38255 * 120.00284 * 0.02562 * 5 4 3 7 7 C 1.38217 * 119.99740 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99801 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.46977 * 269.95092 * 8 7 6 10 10 O 1.21285 * 119.99654 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00030 * 180.02562 * 9 8 7 12 12 C 1.46496 * 120.00008 * 179.97438 * 11 9 8 13 13 C 1.51229 * 111.07691 * 78.36075 * 12 11 9 14 14 C 1.56591 * 104.17253 * 84.75656 * 13 12 11 15 15 C 1.56276 * 106.06847 * 6.57991 * 14 13 12 16 16 C 1.50515 * 101.76353 * 24.67880 * 15 14 13 17 17 H 1.09003 * 107.74205 * 66.76769 * 16 15 14 18 18 N 1.42698 * 128.17704 * 198.67318 * 16 15 14 19 19 C 1.36934 * 127.10047 * 331.69164 * 18 16 15 20 20 H 1.08004 * 120.00125 * 0.02586 * 19 18 16 21 21 C 1.38807 * 120.00151 * 180.02562 * 19 18 16 22 22 N 1.31624 * 120.00226 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00336 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46919 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47213 * 119.99632 * 23 21 19 26 26 H 1.48497 * 109.47409 * 239.99719 * 23 21 19 27 27 C 1.49299 * 105.79551 * 151.73336 * 18 16 15 28 28 C 1.52139 * 111.09433 * 298.98749 * 12 11 9 29 29 C 1.38215 * 119.99815 * 89.99868 * 3 2 1 30 30 H 1.09005 * 109.47028 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47213 * 299.99878 * 1 2 3 32 32 H 1.09000 * 109.47148 * 60.00017 * 1 2 3 33 33 H 1.08990 * 109.47328 * 239.99584 * 2 1 3 34 34 H 1.09006 * 109.47142 * 119.99509 * 2 1 3 35 35 H 1.08002 * 120.00364 * 0.02562 * 4 3 2 36 36 H 1.08000 * 119.99961 * 180.02562 * 5 4 3 37 37 H 1.07997 * 120.00435 * 180.02562 * 6 5 4 38 38 H 1.08994 * 109.46953 * 29.94909 * 8 7 6 39 39 H 1.08996 * 109.46834 * 149.95334 * 8 7 6 40 40 H 0.96993 * 119.99915 * 359.97438 * 11 9 8 41 41 H 1.08995 * 110.41347 * 202.67211 * 13 12 11 42 42 H 1.09002 * 110.40653 * 325.11248 * 13 12 11 43 43 H 1.08996 * 109.73851 * 247.60603 * 14 13 12 44 44 H 1.08998 * 110.50393 * 125.96266 * 14 13 12 45 45 H 1.09002 * 110.97200 * 266.56149 * 15 14 13 46 46 H 1.09005 * 110.97258 * 142.79166 * 15 14 13 47 47 H 0.96992 * 120.00543 * 179.97438 * 22 21 19 48 48 H 1.09001 * 110.04384 * 232.08091 * 27 18 16 49 49 H 1.08991 * 110.04872 * 110.60184 * 27 18 16 50 50 H 1.09005 * 111.15399 * 43.91152 * 28 12 11 51 51 H 1.09001 * 111.15622 * 168.13723 * 28 12 11 52 52 H 1.07995 * 120.00164 * 359.72517 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2624 2.0727 -1.1973 5 6 2.7225 3.3759 -1.1973 6 6 2.9533 4.0276 0.0000 7 6 2.7243 3.3756 1.1970 8 6 2.9764 4.0857 2.5021 9 6 4.3998 3.8483 2.9363 10 8 5.1371 3.1697 2.2530 11 7 4.8535 4.3901 4.0840 12 6 6.2371 4.1589 4.5064 13 6 7.1947 5.0435 3.7400 14 6 7.1873 6.3939 4.5328 15 6 6.3392 6.1353 5.8197 16 6 6.4783 4.6457 5.9846 17 1 7.5204 4.4339 6.2242 18 7 5.6580 3.7624 6.7483 19 6 4.9397 4.0678 7.8734 20 1 4.9592 5.0720 8.2705 21 6 4.1865 3.0869 8.5036 22 7 4.1623 1.8631 8.0194 23 14 3.2060 3.5036 10.0380 24 1 3.3987 4.9371 10.3743 25 1 1.7652 3.2431 9.7907 26 1 3.6743 2.6621 11.1684 27 6 5.7454 2.4364 6.0679 28 6 6.5031 2.6767 4.7229 29 6 2.2626 2.0724 1.1970 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8898 34 1 1.8933 -0.5138 0.8901 35 1 2.0817 1.5638 -2.1327 36 1 2.9019 3.8853 -2.1326 37 1 3.3125 5.0461 0.0000 38 1 2.8097 5.1549 2.3720 39 1 2.2959 3.7017 3.2620 40 1 4.2640 4.9331 4.6302 41 1 8.1969 4.6150 3.7474 42 1 6.8473 5.1825 2.7162 43 1 6.7240 7.1733 3.9279 44 1 8.2026 6.6831 4.8038 45 1 5.2973 6.4148 5.6630 46 1 6.7587 6.6634 6.6760 47 1 3.6363 1.1775 8.4599 48 1 4.7450 2.0515 5.8697 49 1 6.3005 1.7336 6.6891 50 1 6.0752 2.0786 3.9182 51 1 7.5697 2.4802 4.8318 52 1 2.0784 1.5648 2.1323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991449560.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:37 Heat of formation + Delta-G solvation = 13.212623 kcal Electronic energy + Delta-G solvation = -30943.646040 eV Core-core repulsion = 27101.254165 eV Total energy + Delta-G solvation = -3842.391875 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.48591 -39.49444 -37.87076 -34.45730 -34.36681 -32.93769 -32.33803 -31.62161 -29.92617 -29.46118 -27.47512 -26.94553 -25.61849 -24.04062 -23.95064 -22.22963 -21.15990 -20.50114 -19.93186 -19.50399 -18.66540 -16.78816 -16.49003 -16.37497 -15.75176 -15.72850 -15.09263 -14.76205 -14.55104 -14.38774 -13.95769 -13.85946 -13.70883 -13.63338 -13.37073 -13.06723 -12.81598 -12.56069 -12.32388 -12.04960 -11.96700 -11.83131 -11.73001 -11.39503 -11.35304 -11.20836 -11.01790 -10.95569 -10.82961 -10.81818 -10.74059 -10.49016 -10.26480 -9.99914 -9.95522 -9.70389 -9.55048 -9.07698 -8.68908 -8.66429 -8.49563 -8.38602 -6.87312 -5.76494 -3.11134 1.42793 1.50094 3.14986 3.35259 3.41386 3.43745 3.60713 4.00390 4.43337 4.63937 4.70434 4.73974 4.89069 5.10618 5.16471 5.18329 5.21249 5.27914 5.33118 5.38756 5.45631 5.46256 5.55903 5.60602 5.65749 5.65995 5.73440 5.82576 5.83783 5.85282 5.95539 5.98823 6.06185 6.13854 6.16477 6.19270 6.27900 6.30905 6.36466 6.43265 6.50619 6.52802 6.65689 6.71216 6.72690 6.85149 6.91843 7.10204 7.26297 7.52291 7.60503 7.77012 8.12737 8.18259 8.79581 9.11424 9.78071 10.47751 11.35585 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010572 B = 0.003500 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2647.913606 B = 7998.026666 C = 9712.729096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.082 4.082 4 C -0.123 4.123 5 C -0.119 4.119 6 C -0.112 4.112 7 C -0.051 4.051 8 C -0.107 4.107 9 C 0.516 3.484 10 O -0.540 6.540 11 N -0.691 5.691 12 C 0.133 3.867 13 C -0.111 4.111 14 C -0.116 4.116 15 C -0.115 4.115 16 C 0.158 3.842 17 H 0.020 0.980 18 N -0.583 5.583 19 C -0.230 4.230 20 H 0.079 0.921 21 C -0.004 4.004 22 N -0.917 5.917 23 Si 0.908 3.092 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.180 3.820 28 C -0.142 4.142 29 C -0.100 4.100 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.400 0.600 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.252 0.748 48 H 0.063 0.937 49 H 0.033 0.967 50 H 0.077 0.923 51 H 0.061 0.939 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.174 4.217 -15.848 16.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.142 4.142 5 C -0.137 4.137 6 C -0.130 4.130 7 C -0.052 4.052 8 C -0.147 4.147 9 C 0.302 3.698 10 O -0.418 6.418 11 N -0.341 5.341 12 C 0.045 3.955 13 C -0.150 4.150 14 C -0.154 4.154 15 C -0.153 4.153 16 C 0.047 3.953 17 H 0.038 0.962 18 N -0.306 5.306 19 C -0.358 4.358 20 H 0.097 0.903 21 C -0.201 4.201 22 N -0.564 5.564 23 Si 0.739 3.261 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.056 3.944 28 C -0.181 4.181 29 C -0.118 4.118 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.235 0.765 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.062 0.938 48 H 0.082 0.918 49 H 0.051 0.949 50 H 0.095 0.905 51 H 0.080 0.920 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.790 3.606 -16.122 16.754 hybrid contribution -0.746 0.406 1.234 1.499 sum -3.537 4.012 -14.887 15.819 Atomic orbital electron populations 1.21743 0.94860 1.01556 1.02123 1.20538 0.96027 0.92844 1.02886 1.19814 0.99233 0.96058 0.93083 1.20929 1.00960 0.95031 0.97236 1.21009 1.00025 0.95005 0.97675 1.20918 1.00122 0.99912 0.92016 1.19278 0.97980 0.94243 0.93658 1.20716 0.95862 1.02004 0.96136 1.20265 0.88773 0.79669 0.81103 1.90663 1.58103 1.38787 1.54254 1.45669 1.13208 1.52555 1.22703 1.21502 0.80973 0.95854 0.97127 1.22038 0.99104 0.95248 0.98628 1.22960 0.99641 0.97003 0.95831 1.21845 0.99789 0.96843 0.96855 1.20809 0.94959 0.90783 0.88706 0.96236 1.43655 1.53895 1.05197 1.27877 1.19049 1.20735 0.95545 1.00468 0.90316 1.24787 1.00424 0.95653 0.99225 1.69937 1.44269 1.01384 1.40840 0.86109 0.79690 0.77454 0.82870 1.20528 1.21820 1.21796 1.21984 0.98663 0.86476 0.87232 1.22819 1.00350 0.94690 1.00239 1.20898 0.99249 0.93997 0.97698 0.92528 0.92461 0.92747 0.91231 0.90878 0.86588 0.86417 0.86534 0.88490 0.87979 0.76484 0.91339 0.91607 0.92342 0.91954 0.91708 0.91788 0.93763 0.91827 0.94885 0.90490 0.91986 0.86192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.89 37.16 0.37 -0.94 16 2 C -0.09 -0.89 6.06 -27.88 -0.17 -1.06 16 3 C -0.08 -1.03 5.13 -104.62 -0.54 -1.56 16 4 C -0.12 -1.44 9.70 -39.59 -0.38 -1.83 16 5 C -0.12 -1.40 10.05 -39.58 -0.40 -1.79 16 6 C -0.11 -1.43 9.70 -39.58 -0.38 -1.81 16 7 C -0.05 -0.71 4.37 -104.62 -0.46 -1.17 16 8 C -0.11 -1.44 5.83 -29.03 -0.17 -1.61 16 9 C 0.52 8.72 7.21 -10.99 -0.08 8.64 16 10 O -0.54 -10.76 14.15 5.55 0.08 -10.69 16 11 N -0.69 -11.79 4.48 -46.57 -0.21 -11.99 16 12 C 0.13 2.41 0.42 -130.70 -0.06 2.36 16 13 C -0.11 -1.73 6.24 -25.69 -0.16 -1.89 16 14 C -0.12 -1.59 6.95 -23.04 -0.16 -1.75 16 15 C -0.11 -1.85 6.46 -26.21 -0.17 -2.02 16 16 C 0.16 3.11 2.65 -68.72 -0.18 2.93 16 17 H 0.02 0.42 7.98 -51.93 -0.41 0.01 16 18 N -0.58 -13.97 3.16 -162.68 -0.51 -14.49 16 19 C -0.23 -6.02 10.29 -15.06 -0.15 -6.17 16 20 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 21 C 0.00 -0.11 5.49 -17.43 -0.10 -0.21 16 22 N -0.92 -26.15 10.55 55.49 0.59 -25.56 16 23 Si 0.91 21.36 29.55 -169.99 -5.02 16.33 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 C 0.18 4.34 5.33 -0.75 0.00 4.34 16 28 C -0.14 -2.89 6.10 -25.44 -0.16 -3.05 16 29 C -0.10 -1.41 9.36 -39.58 -0.37 -1.78 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 34 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 35 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.10 1.05 8.08 -51.93 -0.42 0.63 16 39 H 0.10 1.32 8.09 -51.93 -0.42 0.90 16 40 H 0.40 6.65 7.55 -40.82 -0.31 6.34 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.07 1.05 7.72 -51.93 -0.40 0.65 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.06 1.03 7.17 -51.93 -0.37 0.66 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 48 H 0.06 1.71 7.05 -51.93 -0.37 1.34 16 49 H 0.03 0.87 7.98 -51.93 -0.41 0.46 16 50 H 0.08 1.65 6.28 -51.93 -0.33 1.32 16 51 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 52 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 408.05 15.07 6.15 6.15 Total: -1.00 -30.71 408.05 -11.55 -42.27 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -8.90 Total: 8.37 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -3.72 Total: -10.39 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: -0.14 Total: -52.04 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.08 Total: -10.69 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -30.71 -11.55 -42.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991449560.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.478 kcal (2) G-P(sol) polarization free energy of solvation -30.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds