Wall clock time and date at job start Wed Apr 1 2020 03:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50695 * 109.47298 * 2 1 4 4 C 1.38264 * 119.99670 * 90.00468 * 3 2 1 5 5 C 1.38216 * 119.99890 * 180.02562 * 4 3 2 6 6 C 1.38253 * 119.99991 * 359.97438 * 5 4 3 7 7 C 1.38218 * 120.00231 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00125 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47114 * 89.99734 * 8 7 6 10 10 O 1.21278 * 120.00149 * 0.02562 * 9 8 7 11 11 N 1.34780 * 120.00083 * 179.97438 * 9 8 7 12 12 C 1.46495 * 119.99959 * 179.97438 * 11 9 8 13 13 C 1.53587 * 112.67630 * 300.66376 * 12 11 9 14 14 C 1.54659 * 106.72449 * 238.54832 * 13 12 11 15 15 C 1.54761 * 103.94775 * 335.09031 * 14 13 12 16 16 C 1.54781 * 103.36057 * 37.79926 * 15 14 13 17 17 H 1.08999 * 111.86510 * 85.76989 * 16 15 14 18 18 N 1.46980 * 108.68152 * 209.71113 * 16 15 14 19 19 C 1.36932 * 125.58376 * 294.10445 * 18 16 15 20 20 H 1.08003 * 119.99874 * 0.02562 * 19 18 16 21 21 C 1.38811 * 120.00110 * 180.02562 * 19 18 16 22 22 N 1.31621 * 120.00015 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00069 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47226 * 89.99954 * 23 21 19 25 25 H 1.48502 * 109.47324 * 210.00364 * 23 21 19 26 26 H 1.48505 * 109.47010 * 329.99896 * 23 21 19 27 27 C 1.47372 * 108.83638 * 114.12623 * 18 16 15 28 28 C 1.54863 * 104.82403 * 335.31225 * 27 18 16 29 29 C 1.38213 * 120.00482 * 270.27864 * 3 2 1 30 30 H 1.08998 * 109.46852 * 299.99550 * 1 2 3 31 31 H 1.09003 * 109.47588 * 59.99586 * 1 2 3 32 32 H 1.09001 * 109.47631 * 179.97438 * 1 2 3 33 33 H 1.09011 * 109.46607 * 240.00159 * 2 1 3 34 34 H 1.08997 * 109.47344 * 120.00770 * 2 1 3 35 35 H 1.07997 * 119.99852 * 0.02562 * 4 3 2 36 36 H 1.08000 * 119.99777 * 179.97438 * 5 4 3 37 37 H 1.07997 * 119.99669 * 179.97438 * 6 5 4 38 38 H 1.09005 * 109.46694 * 330.00068 * 8 7 6 39 39 H 1.09000 * 109.47414 * 210.00318 * 8 7 6 40 40 H 0.97000 * 119.99716 * 0.02562 * 11 9 8 41 41 H 1.09001 * 110.01521 * 357.86153 * 13 12 11 42 42 H 1.08997 * 110.01679 * 119.20070 * 13 12 11 43 43 H 1.09000 * 110.67728 * 216.45173 * 14 13 12 44 44 H 1.08997 * 110.51086 * 93.65198 * 14 13 12 45 45 H 1.09002 * 110.67220 * 279.28301 * 15 14 13 46 46 H 1.09001 * 110.66738 * 156.31521 * 15 14 13 47 47 H 0.97000 * 119.99814 * 180.02562 * 22 21 19 48 48 H 1.09000 * 110.36918 * 94.14516 * 27 18 16 49 49 H 1.08998 * 110.37202 * 216.46951 * 27 18 16 50 50 H 1.08999 * 110.97194 * 155.19015 * 28 27 18 51 51 H 1.09006 * 110.96628 * 278.91501 * 28 27 18 52 52 H 1.08005 * 119.99997 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0724 1.1974 5 6 2.7231 3.3757 1.1975 6 6 2.9534 4.0275 0.0002 7 6 2.7230 3.3761 -1.1968 8 6 2.9735 4.0867 -2.5019 9 6 4.3968 3.8506 -2.9373 10 8 5.1348 3.1716 -2.2553 11 7 4.8492 4.3931 -4.0851 12 6 6.2329 4.1639 -4.5081 13 6 7.2573 4.6660 -3.4798 14 6 8.1440 5.7047 -4.2055 15 6 8.0423 5.3048 -5.6971 16 6 6.5655 4.8674 -5.8502 17 1 5.9104 5.7143 -6.0546 18 7 6.4836 3.8467 -6.9046 19 6 6.7450 4.0508 -8.2332 20 1 7.0403 5.0297 -8.5813 21 6 6.6305 2.9997 -9.1326 22 7 6.2702 1.8069 -8.7084 23 14 6.9877 3.2780 -10.9448 24 1 8.4261 3.0220 -11.2108 25 1 6.1611 2.3521 -11.7602 26 1 6.6599 4.6811 -11.3042 27 6 6.0737 2.5678 -6.2980 28 6 6.5146 2.6723 -4.8171 29 6 2.2572 2.0743 -1.1969 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8932 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 2.0832 1.5631 2.1327 36 1 2.9027 3.8849 2.1328 37 1 3.3127 5.0460 0.0003 38 1 2.8062 5.1559 -2.3712 39 1 2.2927 3.7026 -3.2614 40 1 4.2588 4.9358 -4.6308 41 1 6.7440 5.1354 -2.6405 42 1 7.8683 3.8357 -3.1258 43 1 9.1762 5.6367 -3.8618 44 1 7.7556 6.7116 -4.0530 45 1 8.7142 4.4758 -5.9199 46 1 8.2596 6.1579 -6.3398 47 1 6.1905 1.0724 -9.3368 48 1 4.9926 2.4457 -6.3641 49 1 6.5808 1.7360 -6.7871 50 1 5.9114 2.0220 -4.1836 51 1 7.5751 2.4444 -4.7089 52 1 2.0725 1.5669 -2.1323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991449563.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:41 Heat of formation + Delta-G solvation = 0.479860 kcal Electronic energy + Delta-G solvation = -30451.403557 eV Core-core repulsion = 26608.459548 eV Total energy + Delta-G solvation = -3842.944009 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.30883 -39.45432 -37.94157 -34.53369 -34.20848 -33.36734 -32.43487 -31.39711 -29.87453 -29.53778 -27.71408 -26.69683 -25.69247 -24.05320 -23.82498 -22.31985 -21.37869 -20.40332 -19.96291 -19.31782 -18.74984 -17.03761 -16.79956 -16.47948 -15.86007 -15.75893 -15.10413 -14.94000 -14.67714 -14.14406 -14.01156 -13.86864 -13.68934 -13.49310 -13.28289 -13.04572 -12.95423 -12.82875 -12.23033 -12.12786 -12.08863 -11.83164 -11.72308 -11.61376 -11.35908 -11.15060 -10.99073 -10.91202 -10.85271 -10.84676 -10.64226 -10.50287 -10.14646 -10.03998 -9.95124 -9.73163 -9.61534 -9.35481 -8.78142 -8.65782 -8.61092 -8.49130 -6.85414 -5.64871 -3.08044 1.31643 1.39396 2.94312 3.38437 3.41263 3.44179 3.45639 3.85000 4.46991 4.57770 4.62392 4.78003 4.86665 5.00305 5.06669 5.15434 5.17928 5.20603 5.23386 5.34169 5.35910 5.42113 5.50071 5.52102 5.55535 5.66930 5.73729 5.74734 5.85030 5.87630 5.96127 6.02108 6.05348 6.08799 6.09885 6.16582 6.30390 6.38271 6.42838 6.44197 6.54610 6.56517 6.60491 6.61972 6.79990 6.81178 6.99352 7.01478 7.16689 7.54882 7.64501 7.85255 7.90638 8.36719 8.57996 9.21280 9.82327 10.46678 11.37602 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014621 B = 0.002743 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.596790 B =10206.583333 C =11538.307053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.081 4.081 4 C -0.122 4.122 5 C -0.118 4.118 6 C -0.111 4.111 7 C -0.055 4.055 8 C -0.106 4.106 9 C 0.514 3.486 10 O -0.529 6.529 11 N -0.707 5.707 12 C 0.163 3.837 13 C -0.108 4.108 14 C -0.125 4.125 15 C -0.130 4.130 16 C 0.161 3.839 17 H 0.046 0.954 18 N -0.596 5.596 19 C -0.220 4.220 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.920 5.920 23 Si 0.913 3.087 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.153 3.847 28 C -0.141 4.141 29 C -0.101 4.101 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.399 0.601 41 H 0.057 0.943 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.073 0.927 46 H 0.057 0.943 47 H 0.251 0.749 48 H 0.008 0.992 49 H 0.107 0.893 50 H 0.065 0.935 51 H 0.066 0.934 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.014 3.662 17.880 20.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.140 4.140 5 C -0.136 4.136 6 C -0.129 4.129 7 C -0.056 4.056 8 C -0.146 4.146 9 C 0.299 3.701 10 O -0.405 6.405 11 N -0.357 5.357 12 C 0.077 3.923 13 C -0.147 4.147 14 C -0.163 4.163 15 C -0.170 4.170 16 C 0.053 3.947 17 H 0.064 0.936 18 N -0.320 5.320 19 C -0.348 4.348 20 H 0.095 0.905 21 C -0.206 4.206 22 N -0.569 5.569 23 Si 0.743 3.257 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.208 1.208 27 C 0.029 3.971 28 C -0.180 4.180 29 C -0.119 4.119 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.233 0.767 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.092 0.908 46 H 0.076 0.924 47 H 0.062 0.938 48 H 0.026 0.974 49 H 0.125 0.875 50 H 0.083 0.917 51 H 0.085 0.915 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.500 3.024 18.137 20.256 hybrid contribution -0.117 0.472 -1.268 1.358 sum -8.617 3.495 16.869 19.262 Atomic orbital electron populations 1.21742 0.94818 1.01607 1.02114 1.20543 0.96042 0.92800 1.02951 1.19821 0.99190 0.96055 0.93084 1.20956 1.00729 0.95010 0.97299 1.21030 0.99827 0.94996 0.97743 1.20927 0.99989 0.99946 0.92007 1.19255 0.98346 0.94328 0.93624 1.20717 0.95449 1.02229 0.96213 1.20342 0.88996 0.79739 0.81004 1.90708 1.57914 1.38063 1.53826 1.45912 1.13381 1.53062 1.23379 1.21579 0.79980 0.97305 0.93460 1.22307 0.96704 0.98699 0.97027 1.22440 0.99020 0.98137 0.96692 1.22952 0.99089 1.00938 0.94019 1.21805 0.94233 0.91812 0.86897 0.93622 1.44532 1.79816 1.04870 1.02763 1.19030 1.38648 0.95565 0.81572 0.90546 1.24781 1.01900 0.95755 0.98172 1.69810 1.53944 1.00528 1.32574 0.86104 0.77715 0.77095 0.84747 1.21630 1.21741 1.20805 1.21958 0.96723 0.91312 0.87154 1.23314 1.00927 0.93775 1.00018 1.20870 0.99445 0.93956 0.97670 0.92706 0.92509 0.92482 0.90893 0.91151 0.86497 0.86313 0.86456 0.88256 0.88056 0.76733 0.92398 0.91283 0.92276 0.92412 0.90785 0.92443 0.93777 0.97366 0.87538 0.91666 0.91544 0.86266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.89 37.15 0.37 -0.78 16 2 C -0.09 -0.79 6.06 -27.89 -0.17 -0.96 16 3 C -0.08 -0.92 5.13 -104.62 -0.54 -1.46 16 4 C -0.12 -1.30 9.70 -39.58 -0.38 -1.68 16 5 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 6 C -0.11 -1.29 9.70 -39.58 -0.38 -1.67 16 7 C -0.06 -0.68 4.37 -104.62 -0.46 -1.14 16 8 C -0.11 -1.20 5.83 -29.04 -0.17 -1.37 16 9 C 0.51 7.79 6.99 -10.99 -0.08 7.71 16 10 O -0.53 -9.87 13.91 5.56 0.08 -9.79 16 11 N -0.71 -10.89 5.25 -45.36 -0.24 -11.12 16 12 C 0.16 2.92 0.75 -129.38 -0.10 2.82 16 13 C -0.11 -1.79 5.25 -25.55 -0.13 -1.92 16 14 C -0.12 -1.88 6.87 -24.93 -0.17 -2.05 16 15 C -0.13 -2.35 6.20 -24.87 -0.15 -2.50 16 16 C 0.16 3.18 3.64 -65.60 -0.24 2.94 16 17 H 0.05 0.89 8.02 -51.93 -0.42 0.47 16 18 N -0.60 -14.55 3.03 -161.13 -0.49 -15.04 16 19 C -0.22 -5.89 10.01 -15.06 -0.15 -6.04 16 20 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 21 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 22 N -0.92 -26.50 10.07 55.49 0.56 -25.94 16 23 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 C 0.15 3.73 5.90 -2.58 -0.02 3.71 16 28 C -0.14 -2.91 5.75 -24.74 -0.14 -3.05 16 29 C -0.10 -1.26 9.36 -39.58 -0.37 -1.63 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.69 8.09 -51.92 -0.42 0.27 16 34 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 35 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 36 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 38 H 0.10 0.87 8.09 -51.93 -0.42 0.45 16 39 H 0.10 1.01 8.08 -51.93 -0.42 0.59 16 40 H 0.40 5.37 8.52 -40.82 -0.35 5.02 16 41 H 0.06 0.94 7.44 -51.93 -0.39 0.55 16 42 H 0.07 1.20 7.37 -51.93 -0.38 0.81 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.07 1.50 8.09 -51.93 -0.42 1.08 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 48 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 49 H 0.11 2.95 5.83 -51.93 -0.30 2.65 16 50 H 0.06 1.37 6.82 -51.93 -0.35 1.02 16 51 H 0.07 1.39 7.62 -51.93 -0.40 0.99 16 52 H 0.12 1.42 8.06 -52.48 -0.42 0.99 16 LS Contribution 407.49 15.07 6.14 6.14 Total: -1.00 -31.41 407.49 -11.63 -43.04 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -8.88 Total: 7.10 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -3.78 Total: -11.13 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: -0.17 Total: -52.10 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.08 Total: -9.79 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.41 -11.63 -43.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991449563.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.523 kcal (2) G-P(sol) polarization free energy of solvation -31.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds