Wall clock time and date at job start Wed Apr 1 2020 03:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.46828 * 2 1 4 4 C 1.38257 * 119.99956 * 270.02129 * 3 2 1 5 5 C 1.38217 * 119.99869 * 179.97438 * 4 3 2 6 6 C 1.38258 * 120.00087 * 359.75222 * 5 4 3 7 7 C 1.38211 * 119.99530 * 0.49894 * 6 5 4 8 8 C 1.50707 * 119.99620 * 179.76926 * 7 6 5 9 9 C 1.50704 * 109.46851 * 269.72986 * 8 7 6 10 10 O 1.21274 * 120.00312 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99606 * 180.02562 * 9 8 7 12 12 C 1.46507 * 119.99951 * 180.02562 * 11 9 8 13 13 C 1.53580 * 112.24268 * 59.64541 * 12 11 9 14 14 C 1.54223 * 106.67463 * 121.17349 * 13 12 11 15 15 C 1.55571 * 103.95366 * 25.32507 * 14 13 12 16 16 C 1.54777 * 102.83557 * 321.56811 * 15 14 13 17 17 H 1.08996 * 112.61634 * 275.32550 * 16 15 14 18 18 N 1.46974 * 108.68838 * 150.85689 * 16 15 14 19 19 C 1.36944 * 125.57849 * 65.87857 * 18 16 15 20 20 H 1.08008 * 119.99580 * 343.23128 * 19 18 16 21 21 C 1.38807 * 120.00261 * 163.23283 * 19 18 16 22 22 N 1.31616 * 119.99889 * 332.26280 * 21 19 18 23 23 Si 1.86794 * 120.00108 * 152.53554 * 21 19 18 24 24 H 1.48497 * 109.47222 * 179.72574 * 23 21 19 25 25 H 1.48502 * 109.47065 * 299.72646 * 23 21 19 26 26 H 1.48500 * 109.47291 * 59.72544 * 23 21 19 27 27 C 1.47362 * 108.84540 * 246.13575 * 18 16 15 28 28 C 1.54614 * 104.95040 * 24.32586 * 27 18 16 29 29 C 1.38210 * 119.99970 * 90.00027 * 3 2 1 30 30 H 1.08996 * 109.47634 * 60.00003 * 1 2 3 31 31 H 1.09009 * 109.46866 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47284 * 299.99724 * 1 2 3 33 33 H 1.08994 * 109.47284 * 240.00276 * 2 1 3 34 34 H 1.08996 * 109.47634 * 119.99997 * 2 1 3 35 35 H 1.08004 * 120.00366 * 0.02562 * 4 3 2 36 36 H 1.08005 * 119.99464 * 180.02562 * 5 4 3 37 37 H 1.07995 * 120.00001 * 180.27432 * 6 5 4 38 38 H 1.09000 * 109.46757 * 149.73247 * 8 7 6 39 39 H 1.08991 * 109.47084 * 29.72883 * 8 7 6 40 40 H 0.97000 * 120.00290 * 359.97438 * 11 9 8 41 41 H 1.08998 * 110.01417 * 240.48124 * 13 12 11 42 42 H 1.09005 * 110.02073 * 1.82376 * 13 12 11 43 43 H 1.09005 * 110.49028 * 143.60545 * 14 13 12 44 44 H 1.09000 * 110.49413 * 266.13977 * 14 13 12 45 45 H 1.09004 * 110.28363 * 203.52408 * 15 14 13 46 46 H 1.09002 * 111.41273 * 80.14009 * 15 14 13 47 47 H 0.97002 * 119.99976 * 354.26304 * 22 21 19 48 48 H 1.09000 * 110.37416 * 143.26571 * 27 18 16 49 49 H 1.09000 * 110.37034 * 265.59656 * 27 18 16 50 50 H 1.09001 * 111.08353 * 205.03203 * 28 27 18 51 51 H 1.08997 * 110.75069 * 81.33802 * 28 27 18 52 52 H 1.08001 * 120.00043 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2622 2.0728 -1.1973 5 6 2.7224 3.3761 -1.1973 6 6 2.9478 4.0296 0.0000 7 6 2.7228 3.3761 1.1969 8 6 2.9735 4.0867 2.5021 9 6 4.3969 3.8505 2.9373 10 8 5.1348 3.1716 2.2552 11 7 4.8493 4.3929 4.0851 12 6 6.2332 4.1637 4.5080 13 6 7.2488 4.6763 3.4763 14 6 8.1270 5.7177 4.1993 15 6 8.0426 5.3046 5.6968 16 6 6.5658 4.8672 5.8502 17 1 5.8983 5.7063 6.0461 18 7 6.4841 3.8463 6.9044 19 6 6.7459 4.0503 8.2330 20 1 7.2920 4.9275 8.5472 21 6 6.3096 3.1296 9.1757 22 7 5.2408 2.3996 8.9370 23 14 7.2350 2.9320 10.7862 24 1 6.5678 1.8976 11.6168 25 1 8.6328 2.5161 10.5061 26 1 7.2402 4.2252 11.5161 27 6 6.0802 2.5660 6.2968 28 6 6.5149 2.6720 4.8168 29 6 2.2626 2.0724 1.1969 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.0815 1.5639 -2.1327 36 1 2.9016 3.8854 -2.1327 37 1 3.3031 5.0494 0.0000 38 1 2.2927 3.7023 3.2616 39 1 2.8061 5.1558 2.3716 40 1 4.2590 4.9356 4.6309 41 1 7.8656 3.8519 3.1185 42 1 6.7281 5.1426 2.6398 43 1 9.1573 5.6574 3.8486 44 1 7.7312 6.7219 4.0477 45 1 8.2591 6.1595 6.3374 46 1 8.7145 4.4757 5.9195 47 1 4.7102 2.5622 8.1414 48 1 6.5920 1.7363 6.7845 49 1 4.9998 2.4383 6.3638 50 1 5.9116 2.0218 4.1834 51 1 7.5755 2.4449 4.7087 52 1 2.0830 1.5631 2.1323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991449567.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:46 Heat of formation + Delta-G solvation = -4.750731 kcal Electronic energy + Delta-G solvation = -30508.262704 eV Core-core repulsion = 26665.091879 eV Total energy + Delta-G solvation = -3843.170825 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.85 seconds Orbital eigenvalues (eV) -40.41994 -39.53171 -38.05440 -34.61931 -34.44132 -33.44927 -32.48205 -31.52125 -29.90495 -29.57866 -27.80621 -26.55593 -25.86060 -24.08155 -23.79595 -22.36565 -21.41681 -20.43250 -20.15858 -19.40999 -18.87320 -17.48211 -16.92519 -16.52496 -15.95595 -15.89453 -15.14642 -15.05879 -14.57878 -14.15694 -13.93234 -13.83132 -13.68719 -13.58097 -13.46884 -13.24051 -13.04367 -12.97714 -12.58726 -12.23605 -12.14240 -11.88026 -11.79409 -11.70032 -11.55702 -11.37487 -10.98014 -10.93660 -10.88140 -10.67926 -10.58641 -10.42266 -10.29638 -10.13819 -9.98954 -9.93999 -9.52141 -9.49072 -8.82176 -8.65707 -8.65039 -8.39901 -6.94884 -6.09184 -3.14492 1.27866 1.35821 2.85789 3.33809 3.49261 3.54059 3.71259 3.79798 4.53608 4.57078 4.59029 4.73390 4.75163 4.96896 5.03029 5.06973 5.11173 5.15438 5.18653 5.22564 5.32064 5.34803 5.38279 5.46372 5.52198 5.58584 5.68202 5.71187 5.72180 5.75389 5.83643 5.93381 6.00740 6.01691 6.05446 6.05882 6.17635 6.20866 6.31262 6.36867 6.39456 6.47250 6.51016 6.56737 6.59445 6.68753 6.87375 6.95660 6.97245 7.10627 7.11009 7.78536 7.81040 8.48342 8.49175 9.01995 9.81897 10.37106 11.23125 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014474 B = 0.002782 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.037886 B =10061.135799 C =11442.396046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.081 4.081 4 C -0.121 4.121 5 C -0.118 4.118 6 C -0.111 4.111 7 C -0.056 4.056 8 C -0.106 4.106 9 C 0.514 3.486 10 O -0.529 6.529 11 N -0.709 5.709 12 C 0.163 3.837 13 C -0.109 4.109 14 C -0.125 4.125 15 C -0.126 4.126 16 C 0.160 3.840 17 H 0.048 0.952 18 N -0.595 5.595 19 C -0.334 4.334 20 H 0.064 0.936 21 C -0.025 4.025 22 N -0.917 5.917 23 Si 1.063 2.937 24 H -0.286 1.286 25 H -0.294 1.294 26 H -0.294 1.294 27 C 0.146 3.854 28 C -0.133 4.133 29 C -0.101 4.101 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.399 0.601 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.074 0.926 47 H 0.268 0.732 48 H 0.050 0.950 49 H 0.023 0.977 50 H 0.070 0.930 51 H 0.070 0.930 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.858 2.784 -18.822 20.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.081 4.081 4 C -0.140 4.140 5 C -0.136 4.136 6 C -0.129 4.129 7 C -0.056 4.056 8 C -0.146 4.146 9 C 0.300 3.700 10 O -0.405 6.405 11 N -0.359 5.359 12 C 0.076 3.924 13 C -0.148 4.148 14 C -0.163 4.163 15 C -0.166 4.166 16 C 0.053 3.947 17 H 0.065 0.935 18 N -0.320 5.320 19 C -0.461 4.461 20 H 0.082 0.918 21 C -0.227 4.227 22 N -0.557 5.557 23 Si 0.893 3.107 24 H -0.212 1.212 25 H -0.221 1.221 26 H -0.221 1.221 27 C 0.021 3.979 28 C -0.172 4.172 29 C -0.119 4.119 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.234 0.766 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.093 0.907 47 H 0.080 0.920 48 H 0.068 0.932 49 H 0.040 0.960 50 H 0.089 0.911 51 H 0.089 0.911 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.247 1.407 -17.766 18.884 hybrid contribution -0.343 1.293 -1.063 1.709 sum -6.590 2.700 -18.829 20.130 Atomic orbital electron populations 1.21742 0.94780 1.01635 1.02136 1.20544 0.96082 0.92766 1.02937 1.19825 0.99152 0.96092 0.93074 1.20962 1.00653 0.95023 0.97313 1.21036 0.99803 0.94977 0.97749 1.20928 1.00018 0.99920 0.92005 1.19247 0.98471 0.94299 0.93591 1.20719 0.95302 1.02319 0.96275 1.20372 0.89069 0.79657 0.80910 1.90706 1.57931 1.38096 1.53785 1.45954 1.13339 1.53165 1.23470 1.21603 0.80230 0.96589 0.93937 1.22222 0.96784 0.98747 0.97001 1.22512 0.99094 0.98165 0.96569 1.23015 0.98725 1.00893 0.93959 1.21824 0.94470 0.91906 0.86537 0.93460 1.44555 1.81389 1.02974 1.03095 1.19694 1.33611 1.11633 0.81181 0.91784 1.25703 0.97256 0.97496 1.02212 1.70784 1.12340 1.44261 1.28361 0.83554 0.75598 0.75997 0.75600 1.21164 1.22149 1.22078 1.21485 0.96986 0.89930 0.89516 1.23081 1.01263 0.94685 0.98158 1.20867 0.99448 0.93956 0.97678 0.92686 0.92457 0.92501 0.91139 0.90918 0.86462 0.86280 0.86447 0.88007 0.88185 0.76621 0.91268 0.92198 0.92233 0.92216 0.92335 0.90729 0.92034 0.93183 0.95956 0.91148 0.91122 0.86286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.89 37.16 0.37 -0.77 16 2 C -0.09 -0.78 6.06 -27.88 -0.17 -0.95 16 3 C -0.08 -0.91 5.13 -104.62 -0.54 -1.45 16 4 C -0.12 -1.28 9.70 -39.58 -0.38 -1.66 16 5 C -0.12 -1.25 10.05 -39.58 -0.40 -1.64 16 6 C -0.11 -1.27 9.70 -39.58 -0.38 -1.66 16 7 C -0.06 -0.68 4.37 -104.62 -0.46 -1.14 16 8 C -0.11 -1.19 5.83 -29.03 -0.17 -1.36 16 9 C 0.51 7.66 6.97 -10.98 -0.08 7.58 16 10 O -0.53 -9.64 13.91 5.56 0.08 -9.56 16 11 N -0.71 -10.77 5.23 -45.35 -0.24 -11.01 16 12 C 0.16 2.85 0.74 -129.37 -0.10 2.75 16 13 C -0.11 -1.74 5.24 -25.79 -0.14 -1.88 16 14 C -0.13 -1.85 6.87 -24.72 -0.17 -2.02 16 15 C -0.13 -2.26 6.26 -24.43 -0.15 -2.41 16 16 C 0.16 3.18 3.65 -65.60 -0.24 2.94 16 17 H 0.05 0.95 7.98 -51.93 -0.41 0.53 16 18 N -0.59 -14.46 2.93 -161.29 -0.47 -14.94 16 19 C -0.33 -9.11 9.76 -15.06 -0.15 -9.26 16 20 H 0.06 1.75 7.97 -52.48 -0.42 1.33 16 21 C -0.02 -0.70 5.08 -17.43 -0.09 -0.79 16 22 N -0.92 -27.34 12.93 55.49 0.72 -26.62 16 23 Si 1.06 25.20 30.00 -169.99 -5.10 20.10 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 27 C 0.15 3.43 5.27 -2.72 -0.01 3.42 16 28 C -0.13 -2.62 5.76 -24.87 -0.14 -2.76 16 29 C -0.10 -1.25 9.36 -39.58 -0.37 -1.62 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 34 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 35 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 36 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 37 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.10 1.01 8.09 -51.93 -0.42 0.59 16 39 H 0.10 0.88 8.08 -51.93 -0.42 0.46 16 40 H 0.40 5.43 8.49 -40.82 -0.35 5.08 16 41 H 0.07 1.15 7.41 -51.93 -0.38 0.77 16 42 H 0.06 0.95 7.40 -51.93 -0.38 0.56 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.07 1.47 8.09 -51.93 -0.42 1.05 16 47 H 0.27 8.00 6.03 -40.82 -0.25 7.76 16 48 H 0.05 1.30 7.92 -51.93 -0.41 0.89 16 49 H 0.02 0.56 6.82 -51.93 -0.35 0.21 16 50 H 0.07 1.41 6.82 -51.93 -0.35 1.06 16 51 H 0.07 1.38 7.65 -51.93 -0.40 0.99 16 52 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 408.01 15.07 6.15 6.15 Total: -1.00 -32.33 408.01 -11.46 -43.79 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -8.83 Total: 6.76 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -3.76 Total: -14.68 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: 0.01 Total: -52.56 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.08 Total: -9.56 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -5.10 Total: 20.10 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.33 -11.46 -43.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991449567.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.044 kcal (2) G-P(sol) polarization free energy of solvation -32.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds