Wall clock time and date at job start Wed Apr 1 2020 02:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38235 * 120.00236 * 2 1 4 4 C 1.38230 * 120.00326 * 179.72466 * 3 2 1 5 5 C 1.50696 * 120.00328 * 179.97438 * 4 3 2 6 6 C 1.38235 * 119.99899 * 359.95697 * 4 3 2 7 7 C 1.38234 * 120.00226 * 0.02562 * 6 4 3 8 8 C 1.50701 * 120.00242 * 180.02562 * 7 6 4 9 9 C 1.50699 * 109.47321 * 90.00080 * 8 7 6 10 10 O 1.21281 * 119.99696 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00083 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00121 * 179.97438 * 11 9 8 13 13 C 1.51235 * 111.07829 * 281.64418 * 12 11 9 14 14 C 1.56585 * 104.17349 * 275.22822 * 13 12 11 15 15 C 1.56281 * 106.07250 * 353.42470 * 14 13 12 16 16 C 1.50510 * 101.75974 * 335.32276 * 15 14 13 17 17 H 1.09002 * 107.73739 * 293.23814 * 16 15 14 18 18 N 1.42699 * 128.18397 * 161.33995 * 16 15 14 19 19 C 1.36937 * 127.10267 * 28.25561 * 18 16 15 20 20 H 1.08002 * 120.00076 * 359.96433 * 19 18 16 21 21 C 1.38807 * 119.99685 * 179.97438 * 19 18 16 22 22 N 1.31618 * 120.00633 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99694 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47526 * 89.99903 * 23 21 19 25 25 H 1.48503 * 109.46931 * 209.99695 * 23 21 19 26 26 H 1.48502 * 109.47013 * 329.99306 * 23 21 19 27 27 C 1.49293 * 105.79245 * 208.24989 * 18 16 15 28 28 C 1.52143 * 111.09436 * 61.01347 * 12 11 9 29 29 C 1.38232 * 119.99866 * 0.09093 * 7 6 4 30 30 H 1.09000 * 109.47344 * 89.99948 * 1 2 3 31 31 H 1.09003 * 109.46871 * 209.99878 * 1 2 3 32 32 H 1.09001 * 109.47017 * 329.99216 * 1 2 3 33 33 H 1.08000 * 119.99297 * 359.70257 * 3 2 1 34 34 H 1.08992 * 109.47192 * 89.99475 * 5 4 3 35 35 H 1.09001 * 109.47460 * 210.00173 * 5 4 3 36 36 H 1.09001 * 109.46884 * 329.99838 * 5 4 3 37 37 H 1.08000 * 120.00045 * 180.02562 * 6 4 3 38 38 H 1.09007 * 109.47270 * 209.99767 * 8 7 6 39 39 H 1.09000 * 109.46792 * 329.99461 * 8 7 6 40 40 H 0.97005 * 119.99919 * 359.97438 * 11 9 8 41 41 H 1.09000 * 110.40631 * 34.87344 * 13 12 11 42 42 H 1.08998 * 110.40690 * 157.31311 * 13 12 11 43 43 H 1.09004 * 110.44483 * 234.07523 * 14 13 12 44 44 H 1.08994 * 109.79756 * 112.43050 * 14 13 12 45 45 H 1.09005 * 110.96824 * 217.20461 * 15 14 13 46 46 H 1.08998 * 110.97037 * 93.44116 * 15 14 13 47 47 H 0.96995 * 120.00649 * 180.02562 * 22 21 19 48 48 H 1.09003 * 110.04812 * 249.39994 * 27 18 16 49 49 H 1.08998 * 110.05224 * 127.91974 * 27 18 16 50 50 H 1.09007 * 111.14691 * 191.86853 * 28 12 11 51 51 H 1.08997 * 111.14944 * 316.09062 * 28 12 11 52 52 H 1.08001 * 120.00365 * 179.97438 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0058 5 6 4.3341 2.5022 0.0052 6 6 4.2717 0.0000 0.0124 7 6 3.5806 -1.1972 0.0128 8 6 4.3340 -2.5023 0.0206 9 6 4.5782 -2.9329 1.4440 10 8 4.1800 -2.2472 2.3617 11 7 5.2399 -4.0793 1.6971 12 6 5.4777 -4.4976 3.0808 13 6 6.6280 -3.7287 3.6914 14 6 7.9010 -4.5220 3.2421 15 6 7.3784 -5.8114 2.5302 16 6 6.0178 -5.9753 3.1525 17 1 6.1612 -6.2115 4.2069 18 7 4.9141 -6.7412 2.6713 19 6 4.9666 -7.8683 1.8953 20 1 5.9214 -8.2652 1.5834 21 6 3.7926 -8.5004 1.5094 22 7 2.6290 -8.0169 1.8898 23 14 3.8641 -10.0375 0.4502 24 1 3.9307 -11.2372 1.3227 25 1 2.6482 -10.1102 -0.3993 26 1 5.0700 -9.9868 -0.4149 27 6 3.6905 -6.0601 3.1887 28 6 4.1660 -4.7129 3.8209 29 6 2.1983 -1.1972 0.0046 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5140 33 1 1.6582 2.1324 -0.0049 34 1 4.5114 2.8198 1.0326 35 1 5.2886 2.3704 -0.5043 36 1 3.7471 3.2604 -0.5133 37 1 5.3517 0.0000 0.0173 38 1 3.7475 -3.2636 -0.4937 39 1 5.2889 -2.3735 -0.4890 40 1 5.5587 -4.6275 0.9631 41 1 6.6441 -2.7060 3.3145 42 1 6.5533 -3.7329 4.7788 43 1 8.5076 -4.7902 4.1072 44 1 8.4851 -3.9194 2.5466 45 1 8.0158 -6.6666 2.7550 46 1 7.2992 -5.6579 1.4540 47 1 1.8087 -8.4588 1.6205 48 1 3.2103 -6.6794 3.9463 49 1 2.9973 -5.8648 2.3706 50 1 4.3322 -4.8185 4.8931 51 1 3.4599 -3.9094 3.6116 52 1 1.6582 -2.1325 0.0044 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992157485.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:53 Heat of formation + Delta-G solvation = 12.104752 kcal Electronic energy + Delta-G solvation = -30992.500487 eV Core-core repulsion = 27150.060571 eV Total energy + Delta-G solvation = -3842.439916 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.48675 -39.56083 -37.88023 -34.42088 -33.48821 -33.36210 -32.90722 -31.68271 -29.96156 -28.25173 -26.98936 -26.93748 -26.64872 -25.61871 -24.03170 -21.76763 -20.69685 -20.52012 -20.01057 -19.50327 -18.66069 -16.73803 -16.47283 -16.22129 -15.84454 -15.72868 -14.80460 -14.68100 -14.48931 -14.13155 -14.04271 -13.91855 -13.56882 -13.47602 -13.25305 -12.89888 -12.86111 -12.58288 -12.56208 -12.32713 -12.20265 -11.93129 -11.65497 -11.47019 -11.36664 -11.26648 -11.01461 -10.98246 -10.91048 -10.88755 -10.82468 -10.48492 -10.27663 -10.00684 -9.95341 -9.70003 -9.54185 -9.05854 -8.67988 -8.47549 -8.44870 -8.37943 -6.87021 -5.75960 -3.10638 1.43884 1.47567 3.15639 3.35992 3.41331 3.43300 3.58887 3.98679 4.43741 4.64211 4.71724 4.78839 4.82156 5.16925 5.18503 5.21418 5.26040 5.32583 5.37373 5.39880 5.46245 5.50595 5.57994 5.60532 5.62177 5.64508 5.67496 5.74525 5.77981 5.84099 5.86639 5.95802 5.99321 6.14077 6.20644 6.24973 6.28296 6.31215 6.36688 6.43578 6.50915 6.60195 6.63280 6.71542 6.73920 6.85483 6.92166 7.12164 7.26736 7.52494 7.60600 7.77250 8.13239 8.18725 8.80159 9.11797 9.78463 10.48213 11.36006 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011668 B = 0.003395 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.222606 B = 8244.805375 C = 9661.745880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.083 4.083 3 C -0.126 4.126 4 C -0.087 4.087 5 C -0.111 4.111 6 C -0.112 4.112 7 C -0.046 4.046 8 C -0.107 4.107 9 C 0.516 3.484 10 O -0.540 6.540 11 N -0.691 5.691 12 C 0.133 3.867 13 C -0.111 4.111 14 C -0.116 4.116 15 C -0.115 4.115 16 C 0.158 3.842 17 H 0.020 0.980 18 N -0.583 5.583 19 C -0.230 4.230 20 H 0.078 0.922 21 C -0.004 4.004 22 N -0.917 5.917 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.180 3.820 28 C -0.142 4.142 29 C -0.109 4.109 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.116 0.884 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.116 0.884 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.400 0.600 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.252 0.748 48 H 0.033 0.967 49 H 0.063 0.937 50 H 0.061 0.939 51 H 0.077 0.923 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.003 16.637 -4.070 17.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.083 4.083 3 C -0.144 4.144 4 C -0.087 4.087 5 C -0.168 4.168 6 C -0.130 4.130 7 C -0.047 4.047 8 C -0.147 4.147 9 C 0.302 3.698 10 O -0.418 6.418 11 N -0.341 5.341 12 C 0.045 3.955 13 C -0.150 4.150 14 C -0.154 4.154 15 C -0.153 4.153 16 C 0.047 3.953 17 H 0.038 0.962 18 N -0.306 5.306 19 C -0.359 4.359 20 H 0.096 0.904 21 C -0.201 4.201 22 N -0.564 5.564 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.057 3.943 28 C -0.181 4.181 29 C -0.127 4.127 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.134 0.866 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.134 0.866 38 H 0.120 0.880 39 H 0.115 0.885 40 H 0.235 0.765 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.063 0.937 48 H 0.051 0.949 49 H 0.082 0.918 50 H 0.080 0.920 51 H 0.095 0.905 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.545 16.920 -3.511 17.641 hybrid contribution 0.100 -1.311 -0.833 1.556 sum 3.645 15.610 -4.343 16.608 Atomic orbital electron populations 1.20777 0.91358 1.02796 1.02056 1.19825 0.95894 0.93023 0.99556 1.20804 0.93458 0.97276 1.02874 1.19783 0.93800 0.95044 1.00030 1.20752 0.99688 0.94147 1.02190 1.20780 0.99302 0.91456 1.01493 1.19248 0.93462 0.93560 0.98424 1.20714 1.01902 0.96127 0.95956 1.20258 0.77874 0.81102 0.90562 1.90662 1.50723 1.54069 1.46329 1.45671 1.57218 1.22764 1.08498 1.21505 0.94993 0.97155 0.81808 1.22039 0.94093 0.98618 1.00272 1.22961 0.97069 0.95824 0.99584 1.21843 0.96849 0.96834 0.99800 1.20807 0.89241 0.88695 0.96511 0.96243 1.43646 0.99886 1.27640 1.59441 1.18997 0.92825 1.00359 1.23670 0.90376 1.24791 0.95329 0.99211 1.00781 1.69924 0.96571 1.40785 1.49131 0.86179 0.76865 0.83104 0.79928 1.21660 1.21745 1.20712 1.21980 0.88379 0.87184 0.96786 1.22821 0.96642 1.00243 0.98402 1.20894 0.93502 0.97687 1.00580 0.91383 0.91381 0.91771 0.86565 0.91326 0.91740 0.91840 0.86559 0.87950 0.88501 0.76482 0.91611 0.91340 0.91963 0.92336 0.91788 0.91707 0.93715 0.94890 0.91837 0.91988 0.90488 0.86156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 10.01 36.01 0.36 -0.80 16 2 C -0.08 -1.07 5.88 -104.62 -0.62 -1.68 16 3 C -0.13 -1.52 9.36 -39.59 -0.37 -1.89 16 4 C -0.09 -1.05 5.88 -104.63 -0.62 -1.67 16 5 C -0.11 -1.00 10.01 36.00 0.36 -0.64 16 6 C -0.11 -1.48 9.36 -39.58 -0.37 -1.85 16 7 C -0.05 -0.66 4.37 -104.62 -0.46 -1.12 16 8 C -0.11 -1.46 5.83 -29.03 -0.17 -1.63 16 9 C 0.52 8.79 7.21 -10.99 -0.08 8.71 16 10 O -0.54 -10.83 14.15 5.56 0.08 -10.75 16 11 N -0.69 -11.86 4.48 -46.57 -0.21 -12.07 16 12 C 0.13 2.42 0.42 -130.70 -0.06 2.36 16 13 C -0.11 -1.74 6.24 -25.69 -0.16 -1.90 16 14 C -0.12 -1.59 6.95 -23.04 -0.16 -1.75 16 15 C -0.11 -1.86 6.46 -26.21 -0.17 -2.02 16 16 C 0.16 3.12 2.65 -68.73 -0.18 2.94 16 17 H 0.02 0.42 7.98 -51.93 -0.41 0.01 16 18 N -0.58 -14.00 3.16 -162.69 -0.51 -14.52 16 19 C -0.23 -6.04 10.29 -15.06 -0.15 -6.20 16 20 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 21 C 0.00 -0.12 5.49 -17.43 -0.10 -0.21 16 22 N -0.92 -26.18 10.55 55.49 0.59 -25.59 16 23 Si 0.91 21.40 29.55 -169.99 -5.02 16.37 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 27 C 0.18 4.36 5.33 -0.76 0.00 4.35 16 28 C -0.14 -2.90 6.10 -25.44 -0.16 -3.06 16 29 C -0.11 -1.55 9.36 -39.58 -0.37 -1.92 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 32 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 33 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 36 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 37 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.10 1.34 8.09 -51.93 -0.42 0.92 16 39 H 0.10 1.07 8.09 -51.93 -0.42 0.65 16 40 H 0.40 6.69 7.56 -40.82 -0.31 6.38 16 41 H 0.07 1.06 7.72 -51.93 -0.40 0.65 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.06 1.03 7.17 -51.93 -0.37 0.66 16 47 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 48 H 0.03 0.87 7.98 -51.93 -0.41 0.46 16 49 H 0.06 1.71 7.05 -51.93 -0.37 1.34 16 50 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 51 H 0.08 1.65 6.28 -51.93 -0.33 1.33 16 52 H 0.12 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 407.99 15.07 6.15 6.15 Total: -1.00 -30.96 407.99 -11.29 -42.25 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -8.90 Total: 8.13 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -3.46 Total: -9.98 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: -0.14 Total: -52.17 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.08 Total: -10.75 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -30.96 -11.29 -42.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992157485.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.359 kcal (2) G-P(sol) polarization free energy of solvation -30.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds