Wall clock time and date at job start Wed Apr 1 2020 02:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38234 * 119.99464 * 2 1 4 4 C 1.38232 * 119.99842 * 180.11163 * 3 2 1 5 5 C 1.50706 * 120.00317 * 179.97438 * 4 3 2 6 6 C 1.38243 * 120.00069 * 359.83724 * 4 3 2 7 7 C 1.38235 * 119.99602 * 0.09581 * 6 4 3 8 8 C 1.50701 * 119.99808 * 179.97438 * 7 6 4 9 9 C 1.50701 * 109.47148 * 89.99755 * 8 7 6 10 10 O 1.21286 * 119.99909 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00373 * 179.97438 * 9 8 7 12 12 C 1.46492 * 120.00345 * 180.02562 * 11 9 8 13 13 C 1.51215 * 111.06450 * 68.34435 * 12 11 9 14 14 C 1.55055 * 104.91750 * 84.41568 * 13 12 11 15 15 C 1.56282 * 105.91631 * 6.66845 * 14 13 12 16 16 C 1.50535 * 101.75451 * 24.64735 * 15 14 13 17 17 H 1.08999 * 108.15431 * 66.92826 * 16 15 14 18 18 N 1.42716 * 128.12924 * 198.72017 * 16 15 14 19 19 C 1.36940 * 127.09766 * 331.67560 * 18 16 15 20 20 H 1.07992 * 120.00418 * 0.02562 * 19 18 16 21 21 C 1.38813 * 119.99263 * 180.02562 * 19 18 16 22 22 N 1.31618 * 120.00492 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99494 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47298 * 89.99577 * 23 21 19 25 25 H 1.48500 * 109.46992 * 209.99852 * 23 21 19 26 26 H 1.48502 * 109.46846 * 329.99526 * 23 21 19 27 27 C 1.49289 * 105.79642 * 151.67890 * 18 16 15 28 28 C 1.52134 * 111.08282 * 288.30333 * 12 11 9 29 29 C 1.38230 * 120.00326 * 359.97438 * 7 6 4 30 30 H 1.09001 * 109.47016 * 270.02347 * 1 2 3 31 31 H 1.08999 * 109.47577 * 30.02453 * 1 2 3 32 32 H 1.09003 * 109.46594 * 150.02122 * 1 2 3 33 33 H 1.07997 * 120.00481 * 359.97438 * 3 2 1 34 34 H 1.09001 * 109.47060 * 269.88636 * 5 4 3 35 35 H 1.08998 * 109.46941 * 29.88580 * 5 4 3 36 36 H 1.08998 * 109.47482 * 149.88729 * 5 4 3 37 37 H 1.08000 * 119.99728 * 180.36512 * 6 4 3 38 38 H 1.08993 * 109.47341 * 210.00461 * 8 7 6 39 39 H 1.09001 * 109.46864 * 330.00546 * 8 7 6 40 40 H 0.97000 * 119.99770 * 0.02562 * 11 9 8 41 41 H 1.09005 * 110.41172 * 202.64216 * 13 12 11 42 42 H 1.09000 * 110.41203 * 325.07493 * 13 12 11 43 43 H 1.09004 * 109.84500 * 247.73442 * 14 13 12 44 44 H 1.08993 * 110.55049 * 125.98659 * 14 13 12 45 45 H 1.08991 * 110.97535 * 266.53076 * 15 14 13 46 46 H 1.08997 * 110.96832 * 142.75769 * 15 14 13 47 47 H 0.96996 * 120.00286 * 179.97438 * 22 21 19 48 48 H 1.09003 * 110.05237 * 110.59384 * 27 18 16 49 49 H 1.09000 * 110.04953 * 232.01863 * 27 18 16 50 50 H 1.09006 * 111.14649 * 43.94064 * 28 12 11 51 51 H 1.09001 * 111.15189 * 168.16609 * 28 12 11 52 52 H 1.08001 * 120.00350 * 179.97438 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 -0.0023 5 6 4.3339 2.5025 -0.0029 6 6 4.2717 0.0001 -0.0013 7 6 3.5805 -1.1970 0.0001 8 6 4.3341 -2.5021 0.0007 9 6 4.5862 -2.9359 1.4217 10 8 4.1923 -2.2529 2.3433 11 7 5.2485 -4.0835 1.6686 12 6 5.4931 -4.5055 3.0499 13 6 4.2026 -4.8921 3.7367 14 6 3.9641 -6.3706 3.3351 15 6 5.2456 -6.8161 2.5593 16 6 6.2798 -5.8687 3.1060 17 1 6.4345 -6.1054 4.1587 18 7 7.5469 -5.5278 2.5446 19 6 8.3307 -6.3100 1.7389 20 1 8.0034 -7.3023 1.4660 21 6 9.5459 -5.8272 1.2731 22 7 9.9446 -4.6176 1.6053 23 14 10.6149 -6.8938 0.1734 24 1 10.2574 -6.6539 -1.2478 25 1 12.0436 -6.5512 0.3891 26 1 10.3934 -8.3243 0.5049 27 6 7.8413 -4.1426 3.0172 28 6 6.5418 -3.6255 3.7134 29 6 2.1983 -1.1971 0.0010 30 1 -0.3633 0.0004 1.0277 31 1 -0.3634 0.8897 -0.5142 32 1 -0.3632 -0.8902 -0.5135 33 1 1.6581 2.1325 -0.0004 34 1 4.5156 2.8166 -1.0307 35 1 3.7448 3.2623 0.5105 36 1 5.2863 2.3724 0.5110 37 1 5.3517 0.0003 0.0029 38 1 3.7448 -3.2621 -0.5122 39 1 5.2862 -2.3721 -0.5137 40 1 5.5632 -4.6300 0.9316 41 1 4.3103 -4.8164 4.8188 42 1 3.3839 -4.2614 3.3904 43 1 3.0897 -6.4419 2.6882 44 1 3.8269 -6.9904 4.2211 45 1 5.1193 -6.6784 1.4856 46 1 5.5022 -7.8498 2.7911 47 1 10.7939 -4.2805 1.2801 48 1 8.6661 -4.1582 3.7296 49 1 8.0917 -3.5041 2.1700 50 1 6.3691 -2.5724 3.4914 51 1 6.5767 -3.7981 4.7891 52 1 1.6583 -2.1324 0.0017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992157489.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:57 Heat of formation + Delta-G solvation = 11.079912 kcal Electronic energy + Delta-G solvation = -30932.188976 eV Core-core repulsion = 27089.704620 eV Total energy + Delta-G solvation = -3842.484356 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.51141 -39.58655 -37.90686 -34.45760 -33.50903 -33.37389 -32.95796 -31.69760 -29.96316 -28.27762 -27.01179 -26.95030 -26.67061 -25.62095 -24.06218 -21.78005 -20.71817 -20.50673 -20.03917 -19.50331 -18.64003 -16.74011 -16.47294 -16.24247 -15.86746 -15.74691 -14.87515 -14.70573 -14.45023 -14.14413 -14.05885 -13.93096 -13.58597 -13.47461 -13.27376 -12.92046 -12.87607 -12.61071 -12.59789 -12.34100 -12.24349 -11.89885 -11.67800 -11.47717 -11.38936 -11.30082 -11.02873 -10.99331 -10.93238 -10.89468 -10.79124 -10.48065 -10.29781 -10.03450 -9.95461 -9.70617 -9.51630 -9.12347 -8.69583 -8.49804 -8.47059 -8.39639 -6.88900 -5.77628 -3.12394 1.41854 1.45378 3.13809 3.34938 3.41141 3.42872 3.57352 3.97242 4.42639 4.63714 4.69898 4.77012 4.79800 5.15840 5.16776 5.24334 5.25440 5.30569 5.35827 5.39671 5.45348 5.49220 5.55470 5.59191 5.60968 5.62253 5.66137 5.75559 5.76685 5.83267 5.84009 5.96516 6.00133 6.15821 6.18599 6.22759 6.26386 6.33306 6.38072 6.44803 6.51179 6.58320 6.60879 6.67238 6.71614 6.83118 6.91537 7.10006 7.25470 7.50377 7.58216 7.75117 8.13195 8.16910 8.78676 9.10271 9.76827 10.46228 11.34380 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012335 B = 0.003235 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.462070 B = 8654.404825 C = 9833.793230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.086 4.086 3 C -0.126 4.126 4 C -0.083 4.083 5 C -0.113 4.113 6 C -0.109 4.109 7 C -0.046 4.046 8 C -0.107 4.107 9 C 0.515 3.485 10 O -0.542 6.542 11 N -0.692 5.692 12 C 0.134 3.866 13 C -0.111 4.111 14 C -0.116 4.116 15 C -0.113 4.113 16 C 0.157 3.843 17 H 0.022 0.978 18 N -0.584 5.584 19 C -0.231 4.231 20 H 0.079 0.921 21 C -0.004 4.004 22 N -0.918 5.918 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.179 3.821 28 C -0.138 4.138 29 C -0.112 4.112 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.116 0.884 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.120 0.880 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.402 0.598 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.253 0.747 48 H 0.034 0.966 49 H 0.064 0.936 50 H 0.067 0.933 51 H 0.063 0.937 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.061 7.234 -3.321 17.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.086 4.086 3 C -0.144 4.144 4 C -0.083 4.083 5 C -0.170 4.170 6 C -0.127 4.127 7 C -0.047 4.047 8 C -0.147 4.147 9 C 0.301 3.699 10 O -0.419 6.419 11 N -0.342 5.342 12 C 0.046 3.954 13 C -0.150 4.150 14 C -0.154 4.154 15 C -0.152 4.152 16 C 0.046 3.954 17 H 0.039 0.961 18 N -0.308 5.308 19 C -0.359 4.359 20 H 0.097 0.903 21 C -0.201 4.201 22 N -0.565 5.565 23 Si 0.740 3.260 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.056 3.944 28 C -0.177 4.177 29 C -0.130 4.130 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.134 0.866 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.138 0.862 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.238 0.762 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.063 0.937 48 H 0.052 0.948 49 H 0.083 0.917 50 H 0.086 0.914 51 H 0.082 0.918 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.071 7.710 -2.761 18.038 hybrid contribution 0.967 -0.864 -0.878 1.566 sum -15.104 6.846 -3.639 16.978 Atomic orbital electron populations 1.20757 0.91455 1.02383 1.02206 1.19792 0.95766 0.93093 0.99966 1.20805 0.93478 0.97260 1.02855 1.19823 0.93764 0.95154 0.99605 1.20774 1.00062 0.94064 1.02061 1.20879 0.99703 0.91432 1.00710 1.19251 0.93357 0.93671 0.98403 1.20715 1.02196 0.95833 0.95977 1.20275 0.78128 0.80934 0.90581 1.90673 1.51576 1.53661 1.46011 1.45719 1.56566 1.23289 1.08663 1.21466 0.93818 0.98270 0.81799 1.21741 0.97528 0.95679 1.00030 1.22705 0.97445 0.95796 0.99489 1.21832 0.94493 0.99093 0.99790 1.20852 0.86770 0.91450 0.96299 0.96127 1.43678 1.15975 1.14003 1.57116 1.19008 0.98752 0.96303 1.21836 0.90332 1.24794 0.97856 0.96793 1.00661 1.69919 1.22007 1.16127 1.48403 0.86170 0.79973 0.79512 0.80382 1.21623 1.21733 1.20733 1.21995 0.90964 0.84582 0.96883 1.22774 0.96689 0.99325 0.98946 1.20787 0.93389 0.97395 1.01427 0.91313 0.91828 0.91716 0.86554 0.91371 0.91770 0.91432 0.86212 0.88436 0.87976 0.76207 0.91434 0.91207 0.92392 0.91984 0.91650 0.91865 0.93691 0.94798 0.91729 0.91429 0.91834 0.86524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.01 36.01 0.36 -0.63 16 2 C -0.09 -1.03 5.88 -104.62 -0.62 -1.65 16 3 C -0.13 -1.49 9.36 -39.59 -0.37 -1.86 16 4 C -0.08 -1.05 5.88 -104.62 -0.62 -1.66 16 5 C -0.11 -1.11 10.01 36.01 0.36 -0.75 16 6 C -0.11 -1.52 9.36 -39.58 -0.37 -1.89 16 7 C -0.05 -0.65 4.37 -104.63 -0.46 -1.11 16 8 C -0.11 -1.44 5.83 -29.03 -0.17 -1.61 16 9 C 0.52 8.66 7.13 -10.99 -0.08 8.58 16 10 O -0.54 -10.70 14.19 5.55 0.08 -10.62 16 11 N -0.69 -11.89 4.38 -46.58 -0.20 -12.09 16 12 C 0.13 2.44 0.42 -130.71 -0.05 2.39 16 13 C -0.11 -1.77 6.01 -26.54 -0.16 -1.93 16 14 C -0.12 -1.63 6.91 -23.88 -0.17 -1.80 16 15 C -0.11 -1.86 6.47 -26.20 -0.17 -2.03 16 16 C 0.16 3.09 2.61 -68.70 -0.18 2.91 16 17 H 0.02 0.44 7.99 -51.93 -0.41 0.03 16 18 N -0.58 -13.91 3.12 -162.66 -0.51 -14.42 16 19 C -0.23 -6.01 10.29 -15.06 -0.15 -6.17 16 20 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 21 C 0.00 -0.11 5.49 -17.43 -0.10 -0.21 16 22 N -0.92 -25.96 10.54 55.49 0.59 -25.37 16 23 Si 0.91 21.28 29.55 -169.99 -5.02 16.25 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 C 0.18 4.27 5.33 -0.76 0.00 4.26 16 28 C -0.14 -2.78 6.22 -25.44 -0.16 -2.94 16 29 C -0.11 -1.46 9.36 -39.59 -0.37 -1.83 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 32 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 33 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 36 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 37 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.10 1.08 8.08 -51.93 -0.42 0.66 16 39 H 0.10 1.30 8.09 -51.93 -0.42 0.89 16 40 H 0.40 6.91 7.80 -40.82 -0.32 6.59 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.07 1.17 6.84 -51.93 -0.36 0.82 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.06 1.06 7.37 -51.93 -0.38 0.68 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 48 H 0.03 0.89 7.98 -51.93 -0.41 0.47 16 49 H 0.06 1.70 7.04 -51.93 -0.37 1.34 16 50 H 0.07 1.41 7.18 -51.93 -0.37 1.04 16 51 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 52 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 408.07 15.07 6.15 6.15 Total: -1.00 -30.58 408.07 -11.31 -41.88 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -8.92 Total: 8.14 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -3.47 Total: -9.92 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: -0.13 Total: -51.89 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.08 Total: -10.62 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -30.58 -11.31 -41.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992157489.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.961 kcal (2) G-P(sol) polarization free energy of solvation -30.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds