Wall clock time and date at job start Wed Apr 1 2020 02:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38234 * 119.99464 * 2 1 4 4 C 1.38232 * 119.99842 * 180.11163 * 3 2 1 5 5 C 1.50706 * 120.00317 * 179.97438 * 4 3 2 6 6 C 1.38243 * 120.00069 * 359.83724 * 4 3 2 7 7 C 1.38235 * 119.99602 * 0.09581 * 6 4 3 8 8 C 1.50701 * 119.99808 * 179.97438 * 7 6 4 9 9 C 1.50701 * 109.47148 * 89.99755 * 8 7 6 10 10 O 1.21286 * 119.99909 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00373 * 179.97438 * 9 8 7 12 12 C 1.46492 * 120.00345 * 180.02562 * 11 9 8 13 13 C 1.51215 * 111.06450 * 68.34435 * 12 11 9 14 14 C 1.55055 * 104.91750 * 84.41568 * 13 12 11 15 15 C 1.56282 * 105.91631 * 6.66845 * 14 13 12 16 16 C 1.50535 * 101.75451 * 24.64735 * 15 14 13 17 17 H 1.08999 * 108.15431 * 66.92826 * 16 15 14 18 18 N 1.42716 * 128.12924 * 198.72017 * 16 15 14 19 19 C 1.36940 * 127.09766 * 331.67560 * 18 16 15 20 20 H 1.07992 * 120.00418 * 0.02562 * 19 18 16 21 21 C 1.38813 * 119.99263 * 180.02562 * 19 18 16 22 22 N 1.31618 * 120.00492 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99494 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47298 * 89.99577 * 23 21 19 25 25 H 1.48500 * 109.46992 * 209.99852 * 23 21 19 26 26 H 1.48502 * 109.46846 * 329.99526 * 23 21 19 27 27 C 1.49289 * 105.79642 * 151.67890 * 18 16 15 28 28 C 1.52134 * 111.08282 * 288.30333 * 12 11 9 29 29 C 1.38230 * 120.00326 * 359.97438 * 7 6 4 30 30 H 1.09001 * 109.47016 * 270.02347 * 1 2 3 31 31 H 1.08999 * 109.47577 * 30.02453 * 1 2 3 32 32 H 1.09003 * 109.46594 * 150.02122 * 1 2 3 33 33 H 1.07997 * 120.00481 * 359.97438 * 3 2 1 34 34 H 1.09001 * 109.47060 * 269.88636 * 5 4 3 35 35 H 1.08998 * 109.46941 * 29.88580 * 5 4 3 36 36 H 1.08998 * 109.47482 * 149.88729 * 5 4 3 37 37 H 1.08000 * 119.99728 * 180.36512 * 6 4 3 38 38 H 1.08993 * 109.47341 * 210.00461 * 8 7 6 39 39 H 1.09001 * 109.46864 * 330.00546 * 8 7 6 40 40 H 0.97000 * 119.99770 * 0.02562 * 11 9 8 41 41 H 1.09005 * 110.41172 * 202.64216 * 13 12 11 42 42 H 1.09000 * 110.41203 * 325.07493 * 13 12 11 43 43 H 1.09004 * 109.84500 * 247.73442 * 14 13 12 44 44 H 1.08993 * 110.55049 * 125.98659 * 14 13 12 45 45 H 1.08991 * 110.97535 * 266.53076 * 15 14 13 46 46 H 1.08997 * 110.96832 * 142.75769 * 15 14 13 47 47 H 0.96996 * 120.00286 * 179.97438 * 22 21 19 48 48 H 1.09003 * 110.05237 * 110.59384 * 27 18 16 49 49 H 1.09000 * 110.04953 * 232.01863 * 27 18 16 50 50 H 1.09006 * 111.14649 * 43.94064 * 28 12 11 51 51 H 1.09001 * 111.15189 * 168.16609 * 28 12 11 52 52 H 1.08001 * 120.00350 * 179.97438 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 -0.0023 5 6 4.3339 2.5025 -0.0029 6 6 4.2717 0.0001 -0.0013 7 6 3.5805 -1.1970 0.0001 8 6 4.3341 -2.5021 0.0007 9 6 4.5862 -2.9359 1.4217 10 8 4.1923 -2.2529 2.3433 11 7 5.2485 -4.0835 1.6686 12 6 5.4931 -4.5055 3.0499 13 6 4.2026 -4.8921 3.7367 14 6 3.9641 -6.3706 3.3351 15 6 5.2456 -6.8161 2.5593 16 6 6.2798 -5.8687 3.1060 17 1 6.4345 -6.1054 4.1587 18 7 7.5469 -5.5278 2.5446 19 6 8.3307 -6.3100 1.7389 20 1 8.0034 -7.3023 1.4660 21 6 9.5459 -5.8272 1.2731 22 7 9.9446 -4.6176 1.6053 23 14 10.6149 -6.8938 0.1734 24 1 10.2574 -6.6539 -1.2478 25 1 12.0436 -6.5512 0.3891 26 1 10.3934 -8.3243 0.5049 27 6 7.8413 -4.1426 3.0172 28 6 6.5418 -3.6255 3.7134 29 6 2.1983 -1.1971 0.0010 30 1 -0.3633 0.0004 1.0277 31 1 -0.3634 0.8897 -0.5142 32 1 -0.3632 -0.8902 -0.5135 33 1 1.6581 2.1325 -0.0004 34 1 4.5156 2.8166 -1.0307 35 1 3.7448 3.2623 0.5105 36 1 5.2863 2.3724 0.5110 37 1 5.3517 0.0003 0.0029 38 1 3.7448 -3.2621 -0.5122 39 1 5.2862 -2.3721 -0.5137 40 1 5.5632 -4.6300 0.9316 41 1 4.3103 -4.8164 4.8188 42 1 3.3839 -4.2614 3.3904 43 1 3.0897 -6.4419 2.6882 44 1 3.8269 -6.9904 4.2211 45 1 5.1193 -6.6784 1.4856 46 1 5.5022 -7.8498 2.7911 47 1 10.7939 -4.2805 1.2801 48 1 8.6661 -4.1582 3.7296 49 1 8.0917 -3.5041 2.1700 50 1 6.3691 -2.5724 3.4914 51 1 6.5767 -3.7981 4.7891 52 1 1.6583 -2.1324 0.0017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992157489.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:55 Heat of formation + Delta-G solvation = -3.948483 kcal Electronic energy + Delta-G solvation = -30932.840656 eV Core-core repulsion = 27089.704620 eV Total energy + Delta-G solvation = -3843.136037 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.96696 -40.63143 -39.26980 -36.17548 -34.47581 -34.35840 -34.32471 -33.52486 -31.62722 -29.31533 -28.55085 -27.93196 -27.54065 -27.09552 -25.93973 -23.02294 -22.12628 -21.60308 -21.32867 -20.97381 -20.09047 -18.37601 -18.00491 -17.41444 -17.16731 -16.87744 -16.43593 -16.10795 -15.89063 -15.68959 -15.27442 -15.04693 -15.00311 -14.62558 -14.14994 -14.07321 -13.98372 -13.83291 -13.81655 -13.51662 -13.32780 -13.27224 -13.05967 -12.92488 -12.85451 -12.63896 -12.49808 -12.33547 -12.18581 -12.09632 -12.02444 -11.87174 -11.83760 -11.79672 -11.55520 -11.34389 -11.03349 -10.72756 -10.57432 -9.85140 -9.48321 -9.40513 -8.86688 -7.83045 -5.18925 0.44428 0.49822 1.48481 1.49497 1.57836 1.80077 2.34497 2.51134 2.89626 3.10285 3.37048 3.69945 3.73998 3.86947 3.91453 3.96410 4.06499 4.11476 4.24740 4.31016 4.36496 4.42016 4.42259 4.45741 4.54057 4.58313 4.62855 4.63171 4.72136 4.72859 4.80445 4.81888 4.86643 4.94862 5.00023 5.01070 5.07047 5.07830 5.11836 5.23736 5.28832 5.30275 5.38044 5.49799 5.56001 5.60759 5.65033 5.66909 5.69002 5.75248 5.84445 6.17832 6.18480 6.74998 7.05027 7.42229 7.77596 8.50238 9.28652 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012335 B = 0.003235 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.462070 B = 8654.404825 C = 9833.793230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.091 4.091 3 C -0.133 4.133 4 C -0.093 4.093 5 C -0.112 4.112 6 C -0.137 4.137 7 C -0.062 4.062 8 C -0.100 4.100 9 C 0.516 3.484 10 O -0.572 6.572 11 N -0.692 5.692 12 C 0.142 3.858 13 C -0.106 4.106 14 C -0.102 4.102 15 C -0.108 4.108 16 C 0.145 3.855 17 H 0.014 0.986 18 N -0.596 5.596 19 C -0.230 4.230 20 H 0.089 0.911 21 C -0.062 4.062 22 N -0.951 5.951 23 Si 0.973 3.027 24 H -0.285 1.285 25 H -0.303 1.303 26 H -0.269 1.269 27 C 0.193 3.807 28 C -0.128 4.128 29 C -0.126 4.126 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.140 0.860 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.110 0.890 38 H 0.125 0.875 39 H 0.104 0.896 40 H 0.403 0.597 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.067 0.933 46 H 0.070 0.930 47 H 0.244 0.756 48 H -0.002 1.002 49 H 0.031 0.969 50 H 0.056 0.944 51 H 0.075 0.925 52 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.885 6.336 -4.005 20.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.091 4.091 3 C -0.151 4.151 4 C -0.093 4.093 5 C -0.168 4.168 6 C -0.155 4.155 7 C -0.063 4.063 8 C -0.139 4.139 9 C 0.303 3.697 10 O -0.451 6.451 11 N -0.342 5.342 12 C 0.054 3.946 13 C -0.145 4.145 14 C -0.140 4.140 15 C -0.147 4.147 16 C 0.036 3.964 17 H 0.031 0.969 18 N -0.320 5.320 19 C -0.359 4.359 20 H 0.107 0.893 21 C -0.256 4.256 22 N -0.600 5.600 23 Si 0.803 3.197 24 H -0.211 1.211 25 H -0.230 1.230 26 H -0.194 1.194 27 C 0.069 3.931 28 C -0.167 4.167 29 C -0.144 4.144 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.158 0.842 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.128 0.872 38 H 0.143 0.857 39 H 0.122 0.878 40 H 0.239 0.761 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.097 0.903 44 H 0.101 0.899 45 H 0.086 0.914 46 H 0.089 0.911 47 H 0.054 0.946 48 H 0.016 0.984 49 H 0.049 0.951 50 H 0.075 0.925 51 H 0.093 0.907 52 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.933 6.782 -3.448 20.404 hybrid contribution 1.841 -0.537 -0.611 2.013 sum -17.091 6.245 -4.059 18.644 Atomic orbital electron populations 1.20806 0.89174 1.03769 1.02820 1.20219 0.97544 0.92738 0.98622 1.21152 0.93300 0.98409 1.02223 1.20167 0.94566 0.95623 0.98951 1.20811 0.99668 0.93264 1.03061 1.21015 0.99547 0.92496 1.02417 1.19378 0.94063 0.93601 0.99220 1.20702 1.02846 0.96640 0.93757 1.20792 0.77103 0.80118 0.91678 1.90651 1.52828 1.54345 1.47325 1.45740 1.56578 1.23664 1.08232 1.21415 0.94440 0.96286 0.82494 1.21724 0.95561 0.97030 1.00178 1.22637 0.96757 0.94160 1.00404 1.21843 0.94076 0.98574 1.00163 1.21063 0.85852 0.93709 0.95755 0.96908 1.43786 1.17581 1.13713 1.56876 1.19390 0.98783 0.96745 1.20980 0.89322 1.25570 0.99423 0.97985 1.02582 1.70138 1.21988 1.17866 1.49990 0.85151 0.77437 0.78459 0.78699 1.21144 1.22967 1.19423 1.21646 0.91772 0.84817 0.94913 1.22621 0.95747 0.98894 0.99458 1.21027 0.93109 0.98542 1.01770 0.90919 0.90171 0.90703 0.84183 0.90006 0.90253 0.92134 0.87170 0.85673 0.87816 0.76143 0.90766 0.91693 0.90307 0.89913 0.91442 0.91121 0.94623 0.98372 0.95068 0.92549 0.90673 0.85338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.66 10.01 71.24 0.71 -0.94 16 2 C -0.09 -2.03 5.88 -19.87 -0.12 -2.14 16 3 C -0.13 -2.94 9.36 22.27 0.21 -2.73 16 4 C -0.09 -2.29 5.88 -19.86 -0.12 -2.41 16 5 C -0.11 -2.11 10.01 71.24 0.71 -1.40 16 6 C -0.14 -3.89 9.36 22.27 0.21 -3.69 16 7 C -0.06 -1.73 4.37 -19.87 -0.09 -1.81 16 8 C -0.10 -2.65 5.83 29.10 0.17 -2.48 16 9 C 0.52 17.26 7.13 87.66 0.63 17.88 16 10 O -0.57 -22.67 14.19 -3.05 -0.04 -22.71 16 11 N -0.69 -23.54 4.38 -419.68 -1.84 -25.38 16 12 C 0.14 5.07 0.42 4.32 0.00 5.07 16 13 C -0.11 -3.16 6.01 30.72 0.18 -2.98 16 14 C -0.10 -2.50 6.91 32.44 0.22 -2.27 16 15 C -0.11 -3.27 6.47 30.94 0.20 -3.07 16 16 C 0.15 5.62 2.61 46.48 0.12 5.74 16 17 H 0.01 0.55 7.99 -2.39 -0.02 0.53 16 18 N -0.60 -28.83 3.12 -668.55 -2.08 -30.92 16 19 C -0.23 -12.04 10.29 84.03 0.86 -11.18 16 20 H 0.09 4.38 7.83 -2.91 -0.02 4.35 16 21 C -0.06 -3.41 5.49 84.86 0.47 -2.95 16 22 N -0.95 -56.01 10.54 21.65 0.23 -55.78 16 23 Si 0.97 44.26 29.55 68.60 2.03 46.29 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 25 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 27 C 0.19 9.63 5.33 86.96 0.46 10.09 16 28 C -0.13 -5.28 6.22 31.43 0.20 -5.08 16 29 C -0.13 -3.16 9.36 22.27 0.21 -2.95 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 0.95 8.09 -2.39 -0.02 0.93 16 32 H 0.07 0.98 8.09 -2.39 -0.02 0.96 16 33 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 34 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.08 1.24 8.08 -2.39 -0.02 1.22 16 36 H 0.06 1.21 8.09 -2.39 -0.02 1.19 16 37 H 0.11 3.19 8.06 -2.91 -0.02 3.17 16 38 H 0.13 2.56 8.08 -2.39 -0.02 2.54 16 39 H 0.10 2.69 8.09 -2.39 -0.02 2.68 16 40 H 0.40 13.66 7.80 -92.71 -0.72 12.94 16 41 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 42 H 0.06 2.04 6.84 -2.39 -0.02 2.02 16 43 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.07 2.02 7.37 -2.39 -0.02 2.00 16 46 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.24 14.20 8.31 -92.71 -0.77 13.43 16 48 H 0.00 -0.11 7.98 -2.39 -0.02 -0.13 16 49 H 0.03 1.75 7.04 -2.39 -0.02 1.73 16 50 H 0.06 2.44 7.18 -2.38 -0.02 2.42 16 51 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 52 H 0.13 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -68.08 408.07 3.72 -64.36 By element: Atomic # 1 Polarization: 33.26 SS G_CDS: 0.18 Total: 33.44 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: 5.25 Total: -9.30 kcal Atomic # 7 Polarization: -108.39 SS G_CDS: -3.69 Total: -112.08 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.04 Total: -22.71 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -68.08 3.72 -64.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992157489.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.416 kcal (2) G-P(sol) polarization free energy of solvation -68.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds