Wall clock time and date at job start Wed Apr 1 2020 02:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38234 * 120.00087 * 2 1 4 4 C 1.38238 * 120.00082 * 179.97438 * 3 2 1 5 5 C 1.50701 * 120.00067 * 179.97438 * 4 3 2 6 6 C 1.38235 * 120.00108 * 0.02562 * 4 3 2 7 7 C 1.38243 * 119.99617 * 0.02562 * 6 4 3 8 8 C 1.50706 * 119.99586 * 179.97438 * 7 6 4 9 9 C 1.50703 * 109.47001 * 89.99822 * 8 7 6 10 10 O 1.21281 * 119.99990 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00069 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00214 * 180.02562 * 11 9 8 13 13 C 1.53584 * 112.24418 * 59.65131 * 12 11 9 14 14 C 1.54177 * 106.70190 * 122.01844 * 13 12 11 15 15 C 1.54756 * 104.36127 * 24.13385 * 14 13 12 16 16 C 1.54781 * 103.21391 * 322.66890 * 15 14 13 17 17 H 1.08999 * 111.86489 * 275.07819 * 16 15 14 18 18 N 1.46974 * 108.68477 * 150.20908 * 16 15 14 19 19 C 1.36942 * 125.58478 * 65.89770 * 18 16 15 20 20 H 1.07999 * 119.99234 * 359.97438 * 19 18 16 21 21 C 1.38811 * 120.00151 * 179.97438 * 19 18 16 22 22 N 1.31621 * 119.99926 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99947 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46949 * 89.99771 * 23 21 19 25 25 H 1.48503 * 109.46934 * 210.00084 * 23 21 19 26 26 H 1.48498 * 109.46966 * 329.99942 * 23 21 19 27 27 C 1.47372 * 108.83915 * 245.87602 * 18 16 15 28 28 C 1.54866 * 104.81975 * 24.68593 * 27 18 16 29 29 C 1.38233 * 120.00248 * 0.25361 * 7 6 4 30 30 H 1.09000 * 109.47419 * 89.99699 * 1 2 3 31 31 H 1.09001 * 109.47558 * 210.00055 * 1 2 3 32 32 H 1.09002 * 109.46986 * 329.99807 * 1 2 3 33 33 H 1.08001 * 120.00280 * 0.02562 * 3 2 1 34 34 H 1.08998 * 109.47226 * 270.02379 * 5 4 3 35 35 H 1.08996 * 109.47086 * 30.02654 * 5 4 3 36 36 H 1.08999 * 109.46700 * 150.02315 * 5 4 3 37 37 H 1.07999 * 120.00165 * 179.97438 * 6 4 3 38 38 H 1.09000 * 109.46646 * 209.99280 * 8 7 6 39 39 H 1.09000 * 109.47248 * 329.99998 * 8 7 6 40 40 H 0.97000 * 119.99813 * 0.02562 * 11 9 8 41 41 H 1.09002 * 110.01627 * 240.48129 * 13 12 11 42 42 H 1.09010 * 110.01545 * 1.86797 * 13 12 11 43 43 H 1.08991 * 109.98331 * 265.59923 * 14 13 12 44 44 H 1.09001 * 110.80006 * 143.06908 * 14 13 12 45 45 H 1.09005 * 110.66607 * 204.24110 * 15 14 13 46 46 H 1.08994 * 110.81790 * 81.17107 * 15 14 13 47 47 H 0.97004 * 119.99909 * 179.97438 * 22 21 19 48 48 H 1.08994 * 110.37006 * 143.52717 * 27 18 16 49 49 H 1.09001 * 110.37020 * 265.85326 * 27 18 16 50 50 H 1.09005 * 110.96615 * 204.80608 * 28 27 18 51 51 H 1.09002 * 110.96761 * 81.05134 * 28 27 18 52 52 H 1.08004 * 119.99934 * 179.72684 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.3340 2.5022 0.0000 6 6 4.2717 0.0000 0.0005 7 6 3.5804 -1.1972 -0.0005 8 6 4.3340 -2.5023 -0.0011 9 6 4.5846 -2.9383 1.4195 10 8 4.1906 -2.2561 2.3417 11 7 5.2466 -4.0862 1.6653 12 6 5.4898 -4.5103 3.0463 13 6 4.1852 -4.7052 3.8329 14 6 4.1826 -6.1639 4.3321 15 6 5.6784 -6.5587 4.3719 16 6 6.2641 -5.8523 3.1255 17 1 6.1362 -6.4497 2.2228 18 7 7.6722 -5.5235 3.3887 19 6 8.6824 -6.4306 3.5672 20 1 8.4724 -7.4889 3.5192 21 6 9.9761 -5.9900 3.8098 22 7 10.2320 -4.7002 3.8678 23 14 11.3540 -7.2274 4.0540 24 1 11.9733 -7.5439 2.7420 25 1 12.3805 -6.6528 4.9603 26 1 10.8034 -8.4693 4.6539 27 6 7.8191 -4.0577 3.4286 28 6 6.4142 -3.5289 3.8093 29 6 2.1981 -1.1972 -0.0069 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6582 2.1325 0.0004 34 1 4.5157 2.8164 -1.0278 35 1 3.7450 3.2621 0.5134 36 1 5.2864 2.3720 0.5139 37 1 5.3517 0.0000 0.0005 38 1 3.7450 -3.2616 -0.5156 39 1 5.2866 -2.3716 -0.5145 40 1 5.5621 -4.6316 0.9278 41 1 4.1616 -4.0313 4.6893 42 1 3.3280 -4.5175 3.1862 43 1 3.6394 -6.7968 3.6304 44 1 3.7434 -6.2316 5.3275 45 1 5.7933 -7.6397 4.2910 46 1 6.1523 -6.1898 5.2814 47 1 11.1360 -4.3922 4.0377 48 1 8.5503 -3.7701 4.1841 49 1 8.1146 -3.6792 2.4501 50 1 6.2735 -2.5069 3.4573 51 1 6.2507 -3.5954 4.8849 52 1 1.6581 -2.1325 -0.0122 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992157498.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:05 Heat of formation + Delta-G solvation = -0.766675 kcal Electronic energy + Delta-G solvation = -30518.932319 eV Core-core repulsion = 26675.934256 eV Total energy + Delta-G solvation = -3842.998063 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.32437 -39.51603 -37.94901 -34.25090 -33.58105 -33.50019 -33.32949 -31.42731 -29.88994 -28.41717 -27.13993 -26.75141 -26.71247 -25.69191 -23.83320 -21.88455 -20.79551 -20.59695 -19.96629 -19.30375 -18.73650 -17.02637 -16.75232 -16.32431 -15.96103 -15.74211 -14.95425 -14.61160 -14.56596 -14.17143 -14.04481 -13.77651 -13.52413 -13.34477 -13.10535 -13.01772 -12.99146 -12.84468 -12.65755 -12.38525 -12.16232 -11.88020 -11.71531 -11.57364 -11.51154 -11.14903 -11.07081 -11.01940 -10.96182 -10.83513 -10.66233 -10.50733 -10.13826 -10.04538 -9.93022 -9.72377 -9.61292 -9.33648 -8.65893 -8.59530 -8.55043 -8.48760 -6.85547 -5.64875 -3.08078 1.32699 1.37199 2.95139 3.38205 3.40587 3.44124 3.45863 3.82801 4.47011 4.58201 4.68639 4.71821 4.86861 5.08190 5.13882 5.16756 5.22439 5.23142 5.26174 5.35060 5.41851 5.47786 5.49955 5.52296 5.52920 5.53750 5.66785 5.71596 5.76846 5.84938 5.89620 6.02265 6.09644 6.09846 6.14731 6.17482 6.31117 6.38609 6.44299 6.50464 6.52114 6.56417 6.61949 6.62258 6.80072 6.81526 7.01441 7.01876 7.16766 7.54964 7.64671 7.85548 7.91034 8.36715 8.58775 9.21279 9.82343 10.46650 11.37613 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016397 B = 0.002715 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.214194 B =10311.138285 C =11435.031174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.085 4.085 3 C -0.124 4.124 4 C -0.083 4.083 5 C -0.113 4.113 6 C -0.109 4.109 7 C -0.051 4.051 8 C -0.106 4.106 9 C 0.514 3.486 10 O -0.529 6.529 11 N -0.707 5.707 12 C 0.162 3.838 13 C -0.109 4.109 14 C -0.124 4.124 15 C -0.129 4.129 16 C 0.161 3.839 17 H 0.045 0.955 18 N -0.595 5.595 19 C -0.220 4.220 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.920 5.920 23 Si 0.913 3.087 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.153 3.847 28 C -0.140 4.140 29 C -0.111 4.111 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.117 0.883 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.120 0.880 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.398 0.602 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.057 0.943 46 H 0.074 0.926 47 H 0.251 0.749 48 H 0.107 0.893 49 H 0.008 0.992 50 H 0.065 0.935 51 H 0.066 0.934 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.934 7.985 -9.334 20.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.085 4.085 3 C -0.142 4.142 4 C -0.083 4.083 5 C -0.170 4.170 6 C -0.127 4.127 7 C -0.051 4.051 8 C -0.146 4.146 9 C 0.299 3.701 10 O -0.405 6.405 11 N -0.358 5.358 12 C 0.076 3.924 13 C -0.148 4.148 14 C -0.163 4.163 15 C -0.169 4.169 16 C 0.053 3.947 17 H 0.063 0.937 18 N -0.319 5.319 19 C -0.348 4.348 20 H 0.095 0.905 21 C -0.206 4.206 22 N -0.569 5.569 23 Si 0.743 3.257 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.029 3.971 28 C -0.180 4.180 29 C -0.129 4.129 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.135 0.865 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.138 0.862 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.232 0.768 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.093 0.907 47 H 0.062 0.938 48 H 0.125 0.875 49 H 0.026 0.974 50 H 0.083 0.917 51 H 0.085 0.915 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.952 8.486 -8.613 20.822 hybrid contribution 0.978 -0.968 -0.313 1.411 sum -15.974 7.518 -8.926 19.783 Atomic orbital electron populations 1.20762 0.91390 1.02713 1.02005 1.19803 0.95827 0.93072 0.99813 1.20831 0.93488 0.97324 1.02600 1.19831 0.93781 0.95183 0.99502 1.20779 1.00096 0.94059 1.02081 1.20861 0.99640 0.91436 1.00780 1.19232 0.93403 0.93586 0.98883 1.20717 1.02176 0.96033 0.95657 1.20334 0.78066 0.80879 0.90791 1.90709 1.50519 1.53349 1.45907 1.45927 1.57560 1.23734 1.08565 1.21619 0.94349 0.95750 0.80686 1.22226 0.96473 0.96592 0.99489 1.22354 0.97743 0.96023 1.00151 1.22941 0.93568 0.99899 1.00537 1.21786 0.86015 0.91546 0.95346 0.93700 1.44518 1.01704 1.02437 1.83261 1.19034 0.86508 0.88153 1.41124 0.90539 1.24783 0.97331 0.96148 1.02349 1.69811 1.19262 1.11611 1.56172 0.86101 0.82001 0.80022 0.77532 1.21730 1.21712 1.20723 1.21960 0.92589 0.82480 1.00092 1.23301 0.97822 0.97963 0.98911 1.20790 0.93346 0.97445 1.01351 0.91403 0.91604 0.91708 0.86476 0.91343 0.91700 0.91403 0.86239 0.88275 0.88034 0.76762 0.91424 0.92263 0.92506 0.92263 0.92414 0.90746 0.93771 0.87515 0.97370 0.91659 0.91544 0.86483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 36.00 0.36 -0.57 16 2 C -0.09 -0.95 5.88 -104.63 -0.62 -1.57 16 3 C -0.12 -1.38 9.36 -39.58 -0.37 -1.75 16 4 C -0.08 -0.97 5.88 -104.62 -0.62 -1.58 16 5 C -0.11 -1.03 10.01 36.01 0.36 -0.67 16 6 C -0.11 -1.39 9.36 -39.58 -0.37 -1.76 16 7 C -0.05 -0.64 4.37 -104.62 -0.46 -1.10 16 8 C -0.11 -1.21 5.83 -29.03 -0.17 -1.38 16 9 C 0.51 7.86 6.97 -10.99 -0.08 7.78 16 10 O -0.53 -9.94 13.91 5.56 0.08 -9.86 16 11 N -0.71 -10.96 5.23 -45.36 -0.24 -11.19 16 12 C 0.16 2.91 0.73 -129.38 -0.09 2.82 16 13 C -0.11 -1.80 5.25 -25.81 -0.14 -1.94 16 14 C -0.12 -1.89 6.83 -25.19 -0.17 -2.06 16 15 C -0.13 -2.35 6.22 -24.87 -0.15 -2.50 16 16 C 0.16 3.20 3.65 -65.60 -0.24 2.96 16 17 H 0.05 0.87 7.99 -51.93 -0.42 0.45 16 18 N -0.60 -14.56 3.03 -161.13 -0.49 -15.04 16 19 C -0.22 -5.90 10.01 -15.06 -0.15 -6.05 16 20 H 0.08 1.99 7.83 -52.49 -0.41 1.57 16 21 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 22 N -0.92 -26.53 10.07 55.49 0.56 -25.97 16 23 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 C 0.15 3.74 5.90 -2.58 -0.02 3.73 16 28 C -0.14 -2.91 5.77 -24.74 -0.14 -3.06 16 29 C -0.11 -1.34 9.36 -39.58 -0.37 -1.71 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 32 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 33 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 36 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 37 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.10 0.89 8.08 -51.93 -0.42 0.47 16 39 H 0.10 1.02 8.09 -51.93 -0.42 0.60 16 40 H 0.40 5.40 8.50 -40.82 -0.35 5.05 16 41 H 0.07 1.18 7.41 -51.93 -0.38 0.79 16 42 H 0.06 0.96 7.40 -51.92 -0.38 0.58 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.07 1.51 8.09 -51.93 -0.42 1.09 16 47 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 48 H 0.11 2.96 5.83 -51.93 -0.30 2.66 16 49 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 50 H 0.06 1.38 6.82 -51.93 -0.35 1.03 16 51 H 0.07 1.39 7.65 -51.93 -0.40 0.99 16 52 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 LS Contribution 407.37 15.07 6.14 6.14 Total: -1.00 -31.65 407.37 -11.37 -43.02 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -8.88 Total: 6.94 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -3.52 Total: -10.78 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: -0.17 Total: -52.20 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.08 Total: -9.86 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.65 -11.37 -43.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992157498.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.255 kcal (2) G-P(sol) polarization free energy of solvation -31.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds