Wall clock time and date at job start Wed Apr 1 2020 02:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38234 * 120.00087 * 2 1 4 4 C 1.38238 * 120.00082 * 179.97438 * 3 2 1 5 5 C 1.50701 * 120.00067 * 179.97438 * 4 3 2 6 6 C 1.38235 * 120.00108 * 0.02562 * 4 3 2 7 7 C 1.38243 * 119.99617 * 0.02562 * 6 4 3 8 8 C 1.50706 * 119.99586 * 179.97438 * 7 6 4 9 9 C 1.50703 * 109.47001 * 89.99822 * 8 7 6 10 10 O 1.21281 * 119.99990 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00069 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00214 * 180.02562 * 11 9 8 13 13 C 1.53584 * 112.24418 * 59.65131 * 12 11 9 14 14 C 1.54177 * 106.70190 * 122.01844 * 13 12 11 15 15 C 1.54756 * 104.36127 * 24.13385 * 14 13 12 16 16 C 1.54781 * 103.21391 * 322.66890 * 15 14 13 17 17 H 1.08999 * 111.86489 * 275.07819 * 16 15 14 18 18 N 1.46974 * 108.68477 * 150.20908 * 16 15 14 19 19 C 1.36942 * 125.58478 * 65.89770 * 18 16 15 20 20 H 1.07999 * 119.99234 * 359.97438 * 19 18 16 21 21 C 1.38811 * 120.00151 * 179.97438 * 19 18 16 22 22 N 1.31621 * 119.99926 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99947 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46949 * 89.99771 * 23 21 19 25 25 H 1.48503 * 109.46934 * 210.00084 * 23 21 19 26 26 H 1.48498 * 109.46966 * 329.99942 * 23 21 19 27 27 C 1.47372 * 108.83915 * 245.87602 * 18 16 15 28 28 C 1.54866 * 104.81975 * 24.68593 * 27 18 16 29 29 C 1.38233 * 120.00248 * 0.25361 * 7 6 4 30 30 H 1.09000 * 109.47419 * 89.99699 * 1 2 3 31 31 H 1.09001 * 109.47558 * 210.00055 * 1 2 3 32 32 H 1.09002 * 109.46986 * 329.99807 * 1 2 3 33 33 H 1.08001 * 120.00280 * 0.02562 * 3 2 1 34 34 H 1.08998 * 109.47226 * 270.02379 * 5 4 3 35 35 H 1.08996 * 109.47086 * 30.02654 * 5 4 3 36 36 H 1.08999 * 109.46700 * 150.02315 * 5 4 3 37 37 H 1.07999 * 120.00165 * 179.97438 * 6 4 3 38 38 H 1.09000 * 109.46646 * 209.99280 * 8 7 6 39 39 H 1.09000 * 109.47248 * 329.99998 * 8 7 6 40 40 H 0.97000 * 119.99813 * 0.02562 * 11 9 8 41 41 H 1.09002 * 110.01627 * 240.48129 * 13 12 11 42 42 H 1.09010 * 110.01545 * 1.86797 * 13 12 11 43 43 H 1.08991 * 109.98331 * 265.59923 * 14 13 12 44 44 H 1.09001 * 110.80006 * 143.06908 * 14 13 12 45 45 H 1.09005 * 110.66607 * 204.24110 * 15 14 13 46 46 H 1.08994 * 110.81790 * 81.17107 * 15 14 13 47 47 H 0.97004 * 119.99909 * 179.97438 * 22 21 19 48 48 H 1.08994 * 110.37006 * 143.52717 * 27 18 16 49 49 H 1.09001 * 110.37020 * 265.85326 * 27 18 16 50 50 H 1.09005 * 110.96615 * 204.80608 * 28 27 18 51 51 H 1.09002 * 110.96761 * 81.05134 * 28 27 18 52 52 H 1.08004 * 119.99934 * 179.72684 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.3340 2.5022 0.0000 6 6 4.2717 0.0000 0.0005 7 6 3.5804 -1.1972 -0.0005 8 6 4.3340 -2.5023 -0.0011 9 6 4.5846 -2.9383 1.4195 10 8 4.1906 -2.2561 2.3417 11 7 5.2466 -4.0862 1.6653 12 6 5.4898 -4.5103 3.0463 13 6 4.1852 -4.7052 3.8329 14 6 4.1826 -6.1639 4.3321 15 6 5.6784 -6.5587 4.3719 16 6 6.2641 -5.8523 3.1255 17 1 6.1362 -6.4497 2.2228 18 7 7.6722 -5.5235 3.3887 19 6 8.6824 -6.4306 3.5672 20 1 8.4724 -7.4889 3.5192 21 6 9.9761 -5.9900 3.8098 22 7 10.2320 -4.7002 3.8678 23 14 11.3540 -7.2274 4.0540 24 1 11.9733 -7.5439 2.7420 25 1 12.3805 -6.6528 4.9603 26 1 10.8034 -8.4693 4.6539 27 6 7.8191 -4.0577 3.4286 28 6 6.4142 -3.5289 3.8093 29 6 2.1981 -1.1972 -0.0069 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6582 2.1325 0.0004 34 1 4.5157 2.8164 -1.0278 35 1 3.7450 3.2621 0.5134 36 1 5.2864 2.3720 0.5139 37 1 5.3517 0.0000 0.0005 38 1 3.7450 -3.2616 -0.5156 39 1 5.2866 -2.3716 -0.5145 40 1 5.5621 -4.6316 0.9278 41 1 4.1616 -4.0313 4.6893 42 1 3.3280 -4.5175 3.1862 43 1 3.6394 -6.7968 3.6304 44 1 3.7434 -6.2316 5.3275 45 1 5.7933 -7.6397 4.2910 46 1 6.1523 -6.1898 5.2814 47 1 11.1360 -4.3922 4.0377 48 1 8.5503 -3.7701 4.1841 49 1 8.1146 -3.6792 2.4501 50 1 6.2735 -2.5069 3.4573 51 1 6.2507 -3.5954 4.8849 52 1 1.6581 -2.1325 -0.0122 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992157498.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:04 Heat of formation + Delta-G solvation = -17.147863 kcal Electronic energy + Delta-G solvation = -30519.642660 eV Core-core repulsion = 26675.934256 eV Total energy + Delta-G solvation = -3843.708405 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.64832 -40.54951 -39.28776 -36.03890 -34.71388 -34.38713 -34.35239 -33.30892 -31.55440 -29.41662 -28.42412 -28.00959 -27.53814 -27.09562 -25.73361 -23.12887 -21.99996 -21.60467 -21.49055 -20.61689 -20.17154 -18.89941 -18.03778 -17.24940 -17.12910 -16.89041 -16.82100 -16.00700 -15.71522 -15.54488 -15.09436 -15.03916 -14.85140 -14.58586 -14.43238 -13.98761 -13.91038 -13.84357 -13.81931 -13.56564 -13.33484 -13.28020 -13.06681 -12.90676 -12.82039 -12.64416 -12.52380 -12.32465 -12.30705 -12.02684 -11.90866 -11.86777 -11.83050 -11.69214 -11.55773 -11.46709 -11.24636 -10.72167 -10.70182 -9.90302 -9.48192 -9.39700 -8.86169 -7.73459 -5.18282 0.44341 0.50528 1.47965 1.49191 1.57813 1.74726 2.24385 2.51403 2.88336 3.35585 3.39402 3.64899 3.69151 3.88192 3.96218 3.96524 3.97375 4.07846 4.25622 4.37050 4.37999 4.42681 4.45735 4.47746 4.54406 4.59195 4.63427 4.66113 4.72065 4.72927 4.80906 4.81758 4.86831 4.91892 4.97668 5.01588 5.08060 5.08847 5.17648 5.22854 5.29901 5.32680 5.38244 5.48163 5.51572 5.65053 5.65118 5.67182 5.73357 5.75446 5.85211 6.18187 6.31127 6.67523 7.12240 7.37382 7.80822 8.44988 9.27938 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016397 B = 0.002715 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.214194 B =10311.138285 C =11435.031174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.093 4.093 3 C -0.134 4.134 4 C -0.095 4.095 5 C -0.112 4.112 6 C -0.134 4.134 7 C -0.066 4.066 8 C -0.097 4.097 9 C 0.514 3.486 10 O -0.566 6.566 11 N -0.705 5.705 12 C 0.173 3.827 13 C -0.102 4.102 14 C -0.109 4.109 15 C -0.125 4.125 16 C 0.154 3.846 17 H 0.060 0.940 18 N -0.611 5.611 19 C -0.223 4.223 20 H 0.086 0.914 21 C -0.070 4.070 22 N -0.952 5.952 23 Si 0.977 3.023 24 H -0.288 1.288 25 H -0.299 1.299 26 H -0.268 1.268 27 C 0.165 3.835 28 C -0.128 4.128 29 C -0.126 4.126 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.137 0.863 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.115 0.885 38 H 0.131 0.869 39 H 0.114 0.886 40 H 0.409 0.591 41 H 0.055 0.945 42 H 0.068 0.932 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.066 0.934 46 H 0.047 0.953 47 H 0.244 0.756 48 H 0.069 0.931 49 H -0.016 1.016 50 H 0.057 0.943 51 H 0.060 0.940 52 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.382 6.866 -10.433 23.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.093 4.093 3 C -0.152 4.152 4 C -0.095 4.095 5 C -0.169 4.169 6 C -0.153 4.153 7 C -0.066 4.066 8 C -0.136 4.136 9 C 0.302 3.698 10 O -0.444 6.444 11 N -0.356 5.356 12 C 0.085 3.915 13 C -0.141 4.141 14 C -0.147 4.147 15 C -0.165 4.165 16 C 0.047 3.953 17 H 0.078 0.922 18 N -0.335 5.335 19 C -0.352 4.352 20 H 0.103 0.897 21 C -0.262 4.262 22 N -0.602 5.602 23 Si 0.806 3.194 24 H -0.215 1.215 25 H -0.226 1.226 26 H -0.193 1.193 27 C 0.039 3.961 28 C -0.168 4.168 29 C -0.144 4.144 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.155 0.845 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.133 0.867 38 H 0.149 0.851 39 H 0.133 0.867 40 H 0.245 0.755 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.095 0.905 45 H 0.085 0.915 46 H 0.065 0.935 47 H 0.054 0.946 48 H 0.087 0.913 49 H 0.002 0.998 50 H 0.076 0.924 51 H 0.079 0.921 52 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -19.436 7.335 -9.739 22.944 hybrid contribution 1.711 -0.566 0.016 1.802 sum -17.725 6.769 -9.723 21.320 Atomic orbital electron populations 1.20804 0.89360 1.03330 1.03151 1.20214 0.97468 0.92861 0.98732 1.21147 0.93421 0.98354 1.02252 1.20174 0.94501 0.95778 0.99029 1.20810 0.99687 0.93298 1.03061 1.21036 0.99712 0.92343 1.02170 1.19424 0.94012 0.93854 0.99345 1.20725 1.03365 0.96450 0.93092 1.20966 0.76853 0.79963 0.92046 1.90694 1.51991 1.54254 1.47461 1.45879 1.57607 1.24279 1.07815 1.21410 0.94419 0.93615 0.82019 1.22150 0.95535 0.97511 0.98900 1.22290 0.95599 0.94972 1.01886 1.22807 0.95525 1.00063 0.98151 1.22048 0.83701 0.92913 0.96655 0.92243 1.44701 1.03453 1.02007 1.83321 1.19410 0.87168 0.88957 1.39667 0.89655 1.25597 0.99751 0.97738 1.03155 1.70071 1.19017 1.13372 1.57753 0.85090 0.78924 0.78282 0.77122 1.21519 1.22611 1.19257 1.21596 0.93751 0.83233 0.97489 1.23090 0.96531 0.98182 0.98982 1.21042 0.93263 0.98436 1.01639 0.89893 0.91309 0.90784 0.84472 0.89946 0.90523 0.92031 0.86705 0.85139 0.86739 0.75457 0.92628 0.91370 0.89944 0.90516 0.91496 0.93460 0.94642 0.91255 0.99845 0.92426 0.92143 0.85264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 10.01 71.23 0.71 -0.85 16 2 C -0.09 -1.92 5.88 -19.87 -0.12 -2.04 16 3 C -0.13 -2.78 9.36 22.27 0.21 -2.58 16 4 C -0.09 -2.16 5.88 -19.86 -0.12 -2.28 16 5 C -0.11 -1.96 10.01 71.24 0.71 -1.25 16 6 C -0.13 -3.43 9.36 22.27 0.21 -3.22 16 7 C -0.07 -1.62 4.37 -19.86 -0.09 -1.70 16 8 C -0.10 -2.07 5.83 29.10 0.17 -1.90 16 9 C 0.51 15.20 6.97 87.66 0.61 15.82 16 10 O -0.57 -21.09 13.91 -3.03 -0.04 -21.13 16 11 N -0.70 -20.95 5.23 -415.82 -2.18 -23.13 16 12 C 0.17 6.07 0.73 5.19 0.00 6.07 16 13 C -0.10 -3.18 5.25 31.19 0.16 -3.02 16 14 C -0.11 -2.97 6.83 31.59 0.22 -2.76 16 15 C -0.13 -4.35 6.22 31.80 0.20 -4.15 16 16 C 0.15 5.92 3.65 46.24 0.17 6.09 16 17 H 0.06 2.16 7.99 -2.39 -0.02 2.14 16 18 N -0.61 -30.26 3.03 -663.70 -2.01 -32.27 16 19 C -0.22 -12.03 10.01 84.03 0.84 -11.19 16 20 H 0.09 4.36 7.83 -2.91 -0.02 4.33 16 21 C -0.07 -3.94 5.49 84.86 0.47 -3.48 16 22 N -0.95 -57.05 10.07 21.65 0.22 -56.83 16 23 Si 0.98 45.32 29.55 68.60 2.03 47.35 16 24 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 25 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 26 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 27 C 0.16 8.38 5.90 86.85 0.51 8.90 16 28 C -0.13 -5.47 5.77 31.88 0.18 -5.29 16 29 C -0.13 -2.84 9.36 22.27 0.21 -2.63 16 30 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 0.94 8.09 -2.39 -0.02 0.92 16 32 H 0.07 0.91 8.09 -2.39 -0.02 0.89 16 33 H 0.14 2.18 8.06 -2.91 -0.02 2.15 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 1.13 8.09 -2.39 -0.02 1.11 16 36 H 0.06 1.13 8.09 -2.39 -0.02 1.11 16 37 H 0.11 2.88 8.06 -2.91 -0.02 2.85 16 38 H 0.13 1.95 8.08 -2.39 -0.02 1.93 16 39 H 0.11 2.15 8.09 -2.39 -0.02 2.13 16 40 H 0.41 10.37 8.50 -92.71 -0.79 9.58 16 41 H 0.05 1.87 7.41 -2.39 -0.02 1.86 16 42 H 0.07 2.03 7.40 -2.38 -0.02 2.02 16 43 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.07 2.18 8.14 -2.38 -0.02 2.17 16 46 H 0.05 1.89 8.09 -2.39 -0.02 1.87 16 47 H 0.24 14.33 8.31 -92.71 -0.77 13.55 16 48 H 0.07 4.08 5.83 -2.39 -0.01 4.07 16 49 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 50 H 0.06 2.53 6.82 -2.38 -0.02 2.51 16 51 H 0.06 2.62 7.65 -2.39 -0.02 2.60 16 52 H 0.13 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -70.62 407.37 3.40 -67.23 By element: Atomic # 1 Polarization: 30.14 SS G_CDS: 0.11 Total: 30.25 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: 5.27 Total: -11.47 kcal Atomic # 7 Polarization: -108.26 SS G_CDS: -3.97 Total: -112.22 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.04 Total: -21.13 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -70.62 3.40 -67.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992157498.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.078 kcal (2) G-P(sol) polarization free energy of solvation -70.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds