Wall clock time and date at job start Wed Apr 1 2020 02:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38260 * 120.00046 * 2 1 4 4 C 1.38212 * 119.99944 * 180.02562 * 3 2 1 5 5 C 1.38261 * 120.00181 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.99862 * 179.97438 * 5 4 3 7 7 C 1.38211 * 119.99567 * 359.95816 * 5 4 3 8 8 C 1.50711 * 119.99584 * 180.02562 * 7 5 4 9 9 C 1.50695 * 109.46897 * 84.99724 * 8 7 5 10 10 O 1.21276 * 120.00420 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99677 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99888 * 180.02562 * 11 9 8 13 13 C 1.51223 * 111.06848 * 291.65982 * 12 11 9 14 14 C 1.55692 * 104.61320 * 276.12892 * 13 12 11 15 15 C 1.55029 * 105.77039 * 352.87300 * 14 13 12 16 16 C 1.50521 * 102.34536 * 335.48451 * 15 14 13 17 17 H 1.08999 * 108.14173 * 293.46568 * 16 15 14 18 18 N 1.42711 * 128.15269 * 161.02938 * 16 15 14 19 19 C 1.36936 * 127.10136 * 28.95398 * 18 16 15 20 20 H 1.08003 * 119.99941 * 342.47205 * 19 18 16 21 21 C 1.38808 * 119.99669 * 162.46238 * 19 18 16 22 22 N 1.31609 * 120.00339 * 329.62550 * 21 19 18 23 23 Si 1.86803 * 119.99574 * 149.89885 * 21 19 18 24 24 H 1.48495 * 109.47051 * 179.72587 * 23 21 19 25 25 H 1.48505 * 109.47166 * 299.72612 * 23 21 19 26 26 H 1.48498 * 109.47219 * 59.72631 * 23 21 19 27 27 C 1.49293 * 105.79542 * 209.21894 * 18 16 15 28 28 C 1.52124 * 111.08882 * 71.70036 * 12 11 9 29 29 C 1.38212 * 120.00150 * 180.20803 * 2 1 3 30 30 H 1.09005 * 109.47269 * 89.99581 * 1 2 3 31 31 H 1.08994 * 109.47673 * 210.00008 * 1 2 3 32 32 H 1.09000 * 109.47073 * 330.00091 * 1 2 3 33 33 H 1.07994 * 120.00148 * 359.97438 * 3 2 1 34 34 H 1.08002 * 120.00392 * 179.97438 * 4 3 2 35 35 H 1.09000 * 109.47356 * 269.97270 * 6 5 4 36 36 H 1.08998 * 109.47867 * 29.98063 * 6 5 4 37 37 H 1.09003 * 109.46956 * 149.98205 * 6 5 4 38 38 H 1.08997 * 109.46809 * 324.99520 * 8 7 5 39 39 H 1.08998 * 109.46650 * 204.99830 * 8 7 5 40 40 H 0.97001 * 120.00061 * 0.02562 * 11 9 8 41 41 H 1.09002 * 110.40555 * 34.91063 * 13 12 11 42 42 H 1.08999 * 110.41235 * 157.22784 * 13 12 11 43 43 H 1.09003 * 110.15842 * 111.86262 * 14 13 12 44 44 H 1.08991 * 110.16041 * 233.56077 * 14 13 12 45 45 H 1.09004 * 110.93434 * 217.05937 * 15 14 13 46 46 H 1.09005 * 110.45545 * 93.68887 * 15 14 13 47 47 H 0.97004 * 120.00334 * 354.15693 * 22 21 19 48 48 H 1.09000 * 110.04894 * 127.65739 * 27 18 16 49 49 H 1.08996 * 110.04845 * 249.14054 * 27 18 16 50 50 H 1.09000 * 111.15143 * 191.84970 * 28 12 11 51 51 H 1.09001 * 111.15308 * 316.07558 * 28 12 11 52 52 H 1.07998 * 119.99910 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 5.7786 0.0000 -0.0017 7 6 3.5805 -1.1969 0.0009 8 6 4.3341 -2.5021 0.0015 9 6 4.6934 -2.8740 1.4169 10 8 4.3692 -2.1508 2.3349 11 7 5.3743 -4.0109 1.6628 12 6 5.7232 -4.3727 3.0388 13 6 6.7521 -3.4212 3.6070 14 6 8.1182 -3.9747 3.1056 15 6 7.7989 -5.3294 2.4228 16 6 6.5141 -5.7336 3.0948 17 1 6.7288 -5.9351 4.1442 18 7 5.5462 -6.6825 2.6483 19 6 5.7702 -7.7878 1.8715 20 1 6.6833 -7.8706 1.3007 21 6 4.8238 -8.8018 1.8180 22 7 4.0574 -9.0423 2.8605 23 14 4.6433 -9.8300 0.2689 24 1 3.5759 -10.8428 0.4687 25 1 4.2826 -8.9489 -0.8708 26 1 5.9278 -10.5155 -0.0227 27 6 4.2380 -6.2178 3.1974 28 6 4.4921 -4.8082 3.8192 29 6 2.1980 -1.1969 -0.0043 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6583 2.1326 -0.0004 34 1 4.1204 2.1326 -0.0010 35 1 6.1412 -0.0009 -1.0296 36 1 6.1424 0.8904 0.5111 37 1 6.1424 -0.8896 0.5125 38 1 5.2444 -2.3963 -0.5887 39 1 3.7089 -3.2828 -0.4318 40 1 5.6334 -4.5895 0.9286 41 1 6.5880 -2.4128 3.2269 42 1 6.7144 -3.4267 4.6963 43 1 8.5607 -3.2866 2.3853 44 1 8.7948 -4.1235 3.9470 45 1 8.5862 -6.0580 2.6159 46 1 7.6520 -5.1908 1.3516 47 1 4.2097 -8.5698 3.6939 48 1 3.5008 -6.1477 2.3976 49 1 3.8904 -6.9062 3.9676 50 1 4.7064 -4.8769 4.8857 51 1 3.6509 -4.1409 3.6313 52 1 1.6580 -2.1322 -0.0082 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992169619.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:09 Heat of formation + Delta-G solvation = 11.458118 kcal Electronic energy + Delta-G solvation = -31300.497969 eV Core-core repulsion = 27458.030013 eV Total energy + Delta-G solvation = -3842.467956 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.71109 -39.74085 -37.98830 -34.74892 -34.20095 -33.12352 -32.38030 -31.75741 -29.94644 -29.34478 -27.82575 -26.85055 -25.88280 -24.82258 -23.92219 -22.41616 -21.25210 -20.64569 -19.92422 -19.52496 -18.77956 -17.15387 -16.79751 -16.09730 -15.98232 -15.71812 -14.98713 -14.87147 -14.54936 -14.29610 -14.14154 -13.87577 -13.69142 -13.53321 -13.26717 -13.03812 -12.83249 -12.75906 -12.70146 -12.67024 -12.06316 -12.00506 -11.91017 -11.82946 -11.52487 -11.42194 -11.00958 -10.95843 -10.88000 -10.83442 -10.73616 -10.50008 -10.32681 -10.15737 -10.04362 -9.73432 -9.54764 -9.30974 -8.73035 -8.55518 -8.42158 -8.35998 -6.97703 -6.14169 -3.20134 1.33619 1.41180 3.00777 3.46038 3.48012 3.49547 3.67636 3.86807 4.42915 4.59539 4.63885 4.73734 4.84529 4.98152 5.04238 5.13449 5.15197 5.23919 5.25053 5.31468 5.40338 5.47464 5.51227 5.52752 5.54639 5.56307 5.65578 5.67989 5.71416 5.72478 5.77850 5.86632 5.90459 5.97167 6.10014 6.11732 6.20059 6.22974 6.25726 6.34414 6.41838 6.43798 6.51048 6.58235 6.63867 6.66985 6.78726 6.92736 7.03711 7.05413 7.14992 7.76607 7.99714 8.40463 8.65569 8.98249 9.75334 10.37489 11.16499 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011827 B = 0.003484 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.851931 B = 8035.429963 C = 9219.503978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.093 4.093 3 C -0.121 4.121 4 C -0.118 4.118 5 C -0.075 4.075 6 C -0.115 4.115 7 C -0.052 4.052 8 C -0.108 4.108 9 C 0.515 3.485 10 O -0.538 6.538 11 N -0.694 5.694 12 C 0.134 3.866 13 C -0.110 4.110 14 C -0.116 4.116 15 C -0.111 4.111 16 C 0.159 3.841 17 H 0.020 0.980 18 N -0.581 5.581 19 C -0.343 4.343 20 H 0.066 0.934 21 C -0.021 4.021 22 N -0.907 5.907 23 Si 1.058 2.942 24 H -0.286 1.286 25 H -0.294 1.294 26 H -0.293 1.293 27 C 0.143 3.857 28 C -0.126 4.126 29 C -0.103 4.103 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.403 0.597 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.269 0.731 48 H 0.036 0.964 49 H 0.042 0.958 50 H 0.069 0.931 51 H 0.070 0.930 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.053 18.392 -6.088 19.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 C -0.139 4.139 4 C -0.136 4.136 5 C -0.075 4.075 6 C -0.171 4.171 7 C -0.053 4.053 8 C -0.148 4.148 9 C 0.300 3.700 10 O -0.415 6.415 11 N -0.346 5.346 12 C 0.046 3.954 13 C -0.149 4.149 14 C -0.154 4.154 15 C -0.150 4.150 16 C 0.049 3.951 17 H 0.037 0.963 18 N -0.305 5.305 19 C -0.470 4.470 20 H 0.084 0.916 21 C -0.223 4.223 22 N -0.547 5.547 23 Si 0.888 3.112 24 H -0.212 1.212 25 H -0.222 1.222 26 H -0.220 1.220 27 C 0.019 3.981 28 C -0.165 4.165 29 C -0.122 4.122 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.238 0.762 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.081 0.919 48 H 0.054 0.946 49 H 0.060 0.940 50 H 0.088 0.912 51 H 0.089 0.911 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.050 17.546 -6.194 18.607 hybrid contribution 1.022 0.798 0.415 1.361 sum 0.972 18.343 -5.780 19.257 Atomic orbital electron populations 1.20762 0.91385 1.02723 1.02036 1.19813 0.95900 0.93080 1.00499 1.20932 0.94131 0.97273 1.01598 1.20913 0.94125 0.97194 1.01399 1.19648 0.95802 0.92550 0.99498 1.20798 0.91546 1.02995 1.01773 1.19118 0.93259 0.93176 0.99742 1.20729 1.01899 0.96286 0.95895 1.20297 0.77920 0.81171 0.90570 1.90680 1.53515 1.51353 1.46000 1.45769 1.56708 1.22971 1.09125 1.21472 0.95075 0.96858 0.82014 1.21849 0.93758 0.98967 1.00335 1.22600 0.96887 0.96290 0.99637 1.21570 0.97687 0.95949 0.99790 1.20792 0.90176 0.87820 0.96338 0.96318 1.43644 1.01004 1.25197 1.60697 1.19635 1.08150 0.96799 1.22424 0.91583 1.25656 0.97207 0.96530 1.02954 1.70791 1.43595 1.39074 1.01282 0.83620 0.76033 0.75968 0.75577 1.21165 1.22180 1.22025 1.22126 0.88423 0.91025 0.96545 1.22527 0.97652 0.97591 0.98687 1.20876 0.93359 0.97663 1.00255 0.91405 0.91541 0.91758 0.86454 0.86358 0.91360 0.91665 0.91513 0.88246 0.88134 0.76163 0.91160 0.91270 0.92220 0.91943 0.91790 0.91772 0.91890 0.94595 0.93966 0.91204 0.91112 0.86227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.01 36.00 0.36 -0.68 16 2 C -0.09 -1.11 5.88 -104.63 -0.62 -1.72 16 3 C -0.12 -1.37 9.70 -39.58 -0.38 -1.75 16 4 C -0.12 -1.37 9.70 -39.58 -0.38 -1.75 16 5 C -0.07 -0.94 5.88 -104.63 -0.62 -1.56 16 6 C -0.11 -1.22 9.22 36.00 0.33 -0.89 16 7 C -0.05 -0.70 4.37 -104.62 -0.46 -1.16 16 8 C -0.11 -1.38 5.15 -29.03 -0.15 -1.53 16 9 C 0.51 8.20 6.36 -10.99 -0.07 8.13 16 10 O -0.54 -10.15 14.19 5.56 0.08 -10.07 16 11 N -0.69 -11.40 4.35 -46.58 -0.20 -11.60 16 12 C 0.13 2.35 0.41 -130.71 -0.05 2.30 16 13 C -0.11 -1.71 6.05 -26.19 -0.16 -1.87 16 14 C -0.12 -1.61 6.90 -24.22 -0.17 -1.78 16 15 C -0.11 -1.84 6.37 -26.90 -0.17 -2.01 16 16 C 0.16 3.14 2.65 -68.71 -0.18 2.96 16 17 H 0.02 0.41 7.99 -51.93 -0.41 0.00 16 18 N -0.58 -13.78 2.98 -162.73 -0.49 -14.27 16 19 C -0.34 -9.09 10.01 -15.06 -0.15 -9.24 16 20 H 0.07 1.74 7.99 -52.48 -0.42 1.32 16 21 C -0.02 -0.57 5.15 -17.44 -0.09 -0.66 16 22 N -0.91 -26.78 13.02 55.49 0.72 -26.06 16 23 Si 1.06 24.50 30.01 -169.99 -5.10 19.40 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 27 C 0.14 3.28 5.83 -0.81 0.00 3.28 16 28 C -0.13 -2.43 6.22 -25.49 -0.16 -2.59 16 29 C -0.10 -1.37 9.34 -39.58 -0.37 -1.74 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 32 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 33 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 37 H 0.07 0.78 6.16 -51.93 -0.32 0.46 16 38 H 0.10 1.06 6.99 -51.93 -0.36 0.70 16 39 H 0.10 1.20 8.05 -51.93 -0.42 0.78 16 40 H 0.40 6.59 7.76 -40.82 -0.32 6.27 16 41 H 0.07 1.13 6.84 -51.93 -0.36 0.78 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.06 1.04 7.31 -51.93 -0.38 0.66 16 47 H 0.27 8.02 6.09 -40.82 -0.25 7.77 16 48 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.04 1.06 6.15 -51.93 -0.32 0.74 16 50 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 51 H 0.07 1.40 7.17 -51.93 -0.37 1.03 16 52 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 403.14 15.07 6.08 6.08 Total: -1.00 -31.47 403.14 -11.04 -42.50 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -8.63 Total: 8.30 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -3.49 Total: -14.28 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: 0.03 Total: -51.93 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.08 Total: -10.07 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -5.10 Total: 19.40 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.47 -11.04 -42.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992169619.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.961 kcal (2) G-P(sol) polarization free energy of solvation -31.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds