Wall clock time and date at job start Wed Apr 1 2020 02:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38261 * 119.99585 * 2 1 4 4 C 1.38219 * 119.99548 * 180.02562 * 3 2 1 5 5 C 1.38249 * 120.00015 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99828 * 179.97438 * 5 4 3 7 7 C 1.38209 * 120.00516 * 359.95459 * 5 4 3 8 8 C 1.50703 * 120.00639 * 180.02562 * 7 5 4 9 9 C 1.50704 * 109.47047 * 84.99760 * 8 7 5 10 10 O 1.21282 * 120.00158 * 0.02562 * 9 8 7 11 11 N 1.34780 * 120.00081 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99809 * 180.02562 * 11 9 8 13 13 C 1.51229 * 111.47176 * 68.10149 * 12 11 9 14 14 C 1.55794 * 104.61902 * 84.06326 * 13 12 11 15 15 C 1.56289 * 105.88759 * 7.24345 * 14 13 12 16 16 C 1.50514 * 101.78910 * 24.26324 * 15 14 13 17 17 H 1.08996 * 108.13248 * 66.22272 * 16 15 14 18 18 N 1.42700 * 128.17158 * 198.64251 * 16 15 14 19 19 C 1.36932 * 127.10974 * 331.77334 * 18 16 15 20 20 H 1.08009 * 119.99585 * 0.02562 * 19 18 16 21 21 C 1.38812 * 120.00537 * 180.02562 * 19 18 16 22 22 N 1.31622 * 119.99744 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00054 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46983 * 60.00043 * 23 21 19 25 25 H 1.48503 * 109.46831 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47057 * 299.99733 * 23 21 19 27 27 C 1.49307 * 105.79174 * 151.74261 * 18 16 15 28 28 C 1.52135 * 111.09307 * 288.30455 * 12 11 9 29 29 C 1.38206 * 120.00141 * 180.21279 * 2 1 3 30 30 H 1.09006 * 109.47028 * 90.00047 * 1 2 3 31 31 H 1.08994 * 109.46914 * 209.99839 * 1 2 3 32 32 H 1.08997 * 109.47603 * 330.00130 * 1 2 3 33 33 H 1.07998 * 120.00236 * 359.97438 * 3 2 1 34 34 H 1.07996 * 119.99687 * 179.97438 * 4 3 2 35 35 H 1.08998 * 109.47118 * 269.97288 * 6 5 4 36 36 H 1.09002 * 109.47278 * 29.97529 * 6 5 4 37 37 H 1.09001 * 109.47355 * 149.97903 * 6 5 4 38 38 H 1.08998 * 109.46902 * 325.00404 * 8 7 5 39 39 H 1.08994 * 109.47127 * 204.99684 * 8 7 5 40 40 H 0.96993 * 119.99423 * 359.97438 * 11 9 8 41 41 H 1.09001 * 110.40332 * 202.84267 * 13 12 11 42 42 H 1.08992 * 110.40869 * 325.16294 * 13 12 11 43 43 H 1.08997 * 110.19423 * 248.13905 * 14 13 12 44 44 H 1.09002 * 110.17104 * 126.33618 * 14 13 12 45 45 H 1.09002 * 110.97072 * 266.12667 * 15 14 13 46 46 H 1.09003 * 110.97182 * 142.40076 * 15 14 13 47 47 H 0.96995 * 119.99964 * 179.97438 * 22 21 19 48 48 H 1.08991 * 110.04996 * 110.60342 * 27 18 16 49 49 H 1.08998 * 110.04512 * 232.07808 * 27 18 16 50 50 H 1.09004 * 111.15107 * 168.13153 * 28 12 11 51 51 H 1.09005 * 111.18511 * 43.93077 * 28 12 11 52 52 H 1.08002 * 120.00259 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2716 0.0001 -0.0016 6 6 5.7787 0.0002 -0.0028 7 6 3.5807 -1.1968 -0.0012 8 6 4.3342 -2.5020 -0.0018 9 6 4.6936 -2.8751 1.4134 10 8 4.3694 -2.1527 2.3320 11 7 5.3753 -4.0117 1.6582 12 6 5.7242 -4.3747 3.0340 13 6 4.4954 -4.7268 3.8421 14 6 4.2252 -6.2257 3.5140 15 6 5.4460 -6.7043 2.6636 16 6 6.5160 -5.7350 3.0889 17 1 6.7414 -5.9180 4.1395 18 7 7.7368 -5.4199 2.4205 19 6 8.4597 -6.2362 1.5923 20 1 8.1148 -7.2389 1.3867 21 6 9.6359 -5.7753 1.0169 22 7 10.0559 -4.5532 1.2670 23 14 10.6216 -6.8887 -0.1135 24 1 9.7839 -7.2815 -1.2751 25 1 11.8257 -6.1648 -0.5945 26 1 11.0386 -8.1048 0.6299 27 6 8.0627 -4.0159 2.8102 28 6 6.8178 -3.4682 3.5788 29 6 2.1981 -1.1969 -0.0044 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 1.6582 2.1327 -0.0004 34 1 4.1203 2.1327 -0.0010 35 1 6.1412 0.0002 -1.0307 36 1 6.1424 0.8902 0.5108 37 1 6.1425 -0.8898 0.5107 38 1 5.2445 -2.3957 -0.5918 39 1 3.7090 -3.2823 -0.4356 40 1 5.6343 -4.5897 0.9235 41 1 4.6918 -4.6003 4.9068 42 1 3.6500 -4.1106 3.5364 43 1 3.3047 -6.3248 2.9387 44 1 4.1580 -6.8058 4.4344 45 1 5.2384 -6.6132 1.5974 46 1 5.7223 -7.7273 2.9191 47 1 10.8780 -4.2312 0.8653 48 1 8.9384 -4.0019 3.4589 49 1 8.2468 -3.4143 1.9201 50 1 6.9333 -3.5946 4.6554 51 1 6.6271 -2.4252 3.3261 52 1 1.6581 -2.1322 -0.0083 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992169624.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:13 Heat of formation + Delta-G solvation = 13.206302 kcal Electronic energy + Delta-G solvation = -31352.707787 eV Core-core repulsion = 27510.315638 eV Total energy + Delta-G solvation = -3842.392149 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.54711 -39.63558 -37.85698 -34.44525 -34.10134 -32.97548 -32.28545 -31.63666 -29.91273 -29.24168 -27.72131 -26.93828 -25.65480 -24.71565 -24.05688 -22.32670 -21.14072 -20.48049 -19.85131 -19.43841 -18.64474 -16.72510 -16.47134 -16.00258 -15.89156 -15.65067 -14.96629 -14.69881 -14.47358 -14.29966 -14.04081 -13.93778 -13.55961 -13.47750 -13.14219 -12.94906 -12.66845 -12.64933 -12.57018 -12.33305 -11.92432 -11.86377 -11.81695 -11.44961 -11.39959 -11.32048 -11.02764 -10.94270 -10.88175 -10.81925 -10.78792 -10.48426 -10.31673 -10.04420 -9.95970 -9.70622 -9.52504 -9.13384 -8.69900 -8.65035 -8.39861 -8.28018 -6.89219 -5.77795 -3.12529 1.41431 1.47802 3.13277 3.35351 3.40750 3.41827 3.58567 3.96796 4.42598 4.63765 4.71362 4.81442 4.92009 5.06534 5.16844 5.21446 5.23593 5.31873 5.37702 5.45098 5.49236 5.49665 5.60242 5.61701 5.64078 5.73051 5.74835 5.78165 5.80837 5.83843 5.95573 5.99381 6.03002 6.15352 6.19001 6.26147 6.32949 6.34185 6.37940 6.44704 6.50620 6.51716 6.62790 6.67361 6.77040 6.82652 6.91056 7.10983 7.25429 7.50000 7.57596 7.74534 8.13020 8.16712 8.78545 9.10075 9.76613 10.46079 11.34154 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012906 B = 0.003436 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.021821 B = 8147.540660 C = 9258.775612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.097 4.097 3 C -0.121 4.121 4 C -0.118 4.118 5 C -0.069 4.069 6 C -0.118 4.118 7 C -0.053 4.053 8 C -0.108 4.108 9 C 0.516 3.484 10 O -0.540 6.540 11 N -0.691 5.691 12 C 0.133 3.867 13 C -0.111 4.111 14 C -0.116 4.116 15 C -0.113 4.113 16 C 0.157 3.843 17 H 0.021 0.979 18 N -0.583 5.583 19 C -0.232 4.232 20 H 0.078 0.922 21 C -0.003 4.003 22 N -0.918 5.918 23 Si 0.909 3.091 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.180 3.820 28 C -0.139 4.139 29 C -0.105 4.105 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.402 0.598 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.253 0.747 48 H 0.034 0.966 49 H 0.065 0.935 50 H 0.063 0.937 51 H 0.067 0.933 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.706 6.334 -2.459 17.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.097 4.097 3 C -0.140 4.140 4 C -0.136 4.136 5 C -0.070 4.070 6 C -0.175 4.175 7 C -0.053 4.053 8 C -0.148 4.148 9 C 0.301 3.699 10 O -0.418 6.418 11 N -0.342 5.342 12 C 0.045 3.955 13 C -0.150 4.150 14 C -0.154 4.154 15 C -0.152 4.152 16 C 0.047 3.953 17 H 0.038 0.962 18 N -0.307 5.307 19 C -0.360 4.360 20 H 0.096 0.904 21 C -0.200 4.200 22 N -0.565 5.565 23 Si 0.740 3.260 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C 0.056 3.944 28 C -0.178 4.178 29 C -0.123 4.123 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.121 0.879 39 H 0.114 0.886 40 H 0.238 0.762 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.064 0.936 48 H 0.052 0.948 49 H 0.083 0.917 50 H 0.081 0.919 51 H 0.086 0.914 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.670 6.841 -1.926 17.206 hybrid contribution 0.843 -0.847 -0.906 1.500 sum -14.827 5.993 -2.832 16.241 Atomic orbital electron populations 1.20742 0.91517 1.02554 1.01904 1.19778 0.95758 0.93144 1.01010 1.20922 0.94136 0.97221 1.01674 1.20940 0.94092 0.97317 1.01260 1.19718 0.96042 0.92500 0.98694 1.20837 0.91141 1.03448 1.02025 1.19138 0.93176 0.93317 0.99666 1.20728 1.01988 0.95962 0.96152 1.20258 0.78145 0.81057 0.90437 1.90674 1.54237 1.50910 1.45932 1.45712 1.55976 1.23400 1.09146 1.21476 0.93413 0.98800 0.81765 1.21871 0.97981 0.95608 0.99548 1.22832 0.97693 0.95614 0.99307 1.21822 0.94757 0.98932 0.99668 1.20832 0.87184 0.91458 0.95818 0.96208 1.43654 1.21020 1.11955 1.54038 1.18961 1.02520 0.94711 1.19799 0.90398 1.24787 0.98062 0.96674 1.00513 1.69909 1.23624 1.15685 1.47232 0.86252 0.79602 0.79596 0.80582 1.21178 1.21657 1.21224 1.21994 0.91443 0.83920 0.97041 1.22781 0.96456 0.99138 0.99416 1.20806 0.93288 0.97436 1.00777 0.91527 0.91736 0.91813 0.86522 0.86304 0.91234 0.91585 0.91053 0.87897 0.88575 0.76209 0.91336 0.91265 0.92330 0.92036 0.91656 0.91865 0.93636 0.94811 0.91722 0.91866 0.91444 0.86475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.01 36.01 0.36 -0.62 16 2 C -0.10 -1.15 5.88 -104.63 -0.62 -1.77 16 3 C -0.12 -1.43 9.70 -39.58 -0.38 -1.81 16 4 C -0.12 -1.49 9.70 -39.58 -0.38 -1.87 16 5 C -0.07 -0.97 5.88 -104.63 -0.62 -1.59 16 6 C -0.12 -1.58 9.22 36.01 0.33 -1.25 16 7 C -0.05 -0.74 4.37 -104.62 -0.46 -1.19 16 8 C -0.11 -1.46 5.15 -29.03 -0.15 -1.61 16 9 C 0.52 8.57 6.38 -10.98 -0.07 8.50 16 10 O -0.54 -10.55 14.19 5.56 0.08 -10.47 16 11 N -0.69 -11.79 4.39 -46.57 -0.20 -11.99 16 12 C 0.13 2.40 0.40 -130.71 -0.05 2.35 16 13 C -0.11 -1.77 6.04 -26.13 -0.16 -1.93 16 14 C -0.12 -1.63 6.94 -23.47 -0.16 -1.79 16 15 C -0.11 -1.84 6.46 -26.21 -0.17 -2.01 16 16 C 0.16 3.09 2.64 -68.72 -0.18 2.91 16 17 H 0.02 0.43 7.94 -51.93 -0.41 0.01 16 18 N -0.58 -13.80 3.12 -162.68 -0.51 -14.31 16 19 C -0.23 -6.01 10.29 -15.06 -0.15 -6.16 16 20 H 0.08 1.95 7.83 -52.48 -0.41 1.54 16 21 C 0.00 -0.09 5.49 -17.43 -0.10 -0.19 16 22 N -0.92 -25.77 10.55 55.49 0.59 -25.19 16 23 Si 0.91 21.19 29.55 -169.99 -5.02 16.16 16 24 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 27 C 0.18 4.23 5.33 -0.75 0.00 4.23 16 28 C -0.14 -2.76 6.19 -25.44 -0.16 -2.92 16 29 C -0.10 -1.36 9.34 -39.58 -0.37 -1.73 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 32 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 33 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 37 H 0.07 1.10 6.16 -51.93 -0.32 0.78 16 38 H 0.10 1.34 6.99 -51.93 -0.36 0.97 16 39 H 0.10 1.07 8.05 -51.93 -0.42 0.66 16 40 H 0.40 6.87 7.81 -40.82 -0.32 6.55 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.07 1.16 6.86 -51.93 -0.36 0.80 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.06 1.06 7.38 -51.93 -0.38 0.67 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 48 H 0.03 0.88 7.98 -51.93 -0.41 0.46 16 49 H 0.06 1.68 7.05 -51.93 -0.37 1.32 16 50 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 51 H 0.07 1.39 7.18 -51.93 -0.37 1.01 16 52 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 403.50 15.07 6.08 6.08 Total: -1.00 -30.18 403.50 -11.24 -41.42 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -8.76 Total: 8.76 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -3.49 Total: -10.46 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.13 Total: -51.49 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.08 Total: -10.47 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.18 -11.24 -41.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992169624.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.621 kcal (2) G-P(sol) polarization free energy of solvation -30.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds