Wall clock time and date at job start Wed Apr 1 2020 02:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38256 * 119.99777 * 2 1 4 4 C 1.38220 * 119.99727 * 180.02562 * 3 2 1 5 5 C 1.38250 * 120.00101 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00279 * 179.97438 * 5 4 3 7 7 C 1.38213 * 120.00007 * 0.02562 * 5 4 3 8 8 C 1.50702 * 120.00107 * 179.97438 * 7 5 4 9 9 C 1.50706 * 109.47215 * 84.99622 * 8 7 5 10 10 O 1.21283 * 119.99747 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00241 * 180.02562 * 9 8 7 12 12 C 1.46494 * 120.00367 * 180.02562 * 11 9 8 13 13 C 1.53591 * 112.23985 * 297.64276 * 12 11 9 14 14 C 1.54222 * 106.67377 * 238.24032 * 13 12 11 15 15 C 1.54754 * 104.16131 * 335.06172 * 14 13 12 16 16 C 1.54225 * 103.22384 * 37.68700 * 15 14 13 17 17 H 1.08993 * 112.20764 * 85.29729 * 16 15 14 18 18 N 1.46981 * 108.97793 * 209.68876 * 16 15 14 19 19 C 1.36939 * 125.57870 * 294.43419 * 18 16 15 20 20 H 1.07997 * 119.99728 * 359.44657 * 19 18 16 21 21 C 1.38815 * 119.99845 * 179.72571 * 19 18 16 22 22 N 1.31619 * 119.99884 * 359.72042 * 21 19 18 23 23 Si 1.86798 * 119.99660 * 179.72678 * 21 19 18 24 24 H 1.48493 * 109.47326 * 89.99909 * 23 21 19 25 25 H 1.48506 * 109.46545 * 209.99659 * 23 21 19 26 26 H 1.48498 * 109.47210 * 329.99370 * 23 21 19 27 27 C 1.47377 * 108.84202 * 114.17570 * 18 16 15 28 28 C 1.54863 * 104.82037 * 335.57554 * 27 18 16 29 29 C 1.38207 * 120.00065 * 180.28456 * 2 1 3 30 30 H 1.09001 * 109.47425 * 89.99685 * 1 2 3 31 31 H 1.09002 * 109.47180 * 209.99882 * 1 2 3 32 32 H 1.08997 * 109.47204 * 329.99738 * 1 2 3 33 33 H 1.07996 * 120.00618 * 0.02562 * 3 2 1 34 34 H 1.08000 * 120.00040 * 179.97438 * 4 3 2 35 35 H 1.08998 * 109.47528 * 270.02471 * 6 5 4 36 36 H 1.09005 * 109.46613 * 30.02749 * 6 5 4 37 37 H 1.09001 * 109.47013 * 150.02105 * 6 5 4 38 38 H 1.09002 * 109.46891 * 324.99675 * 8 7 5 39 39 H 1.08997 * 109.47182 * 204.99639 * 8 7 5 40 40 H 0.97008 * 119.99760 * 359.97438 * 11 9 8 41 41 H 1.09002 * 110.01731 * 357.54600 * 13 12 11 42 42 H 1.09003 * 110.01499 * 118.88998 * 13 12 11 43 43 H 1.09001 * 110.49062 * 93.73410 * 14 13 12 44 44 H 1.09001 * 110.48752 * 216.25820 * 14 13 12 45 45 H 1.08991 * 110.66862 * 156.23975 * 15 14 13 46 46 H 1.09000 * 110.66761 * 279.21139 * 15 14 13 47 47 H 0.97000 * 119.99517 * 180.02562 * 22 21 19 48 48 H 1.09004 * 110.36738 * 94.41067 * 27 18 16 49 49 H 1.08997 * 110.36511 * 216.73954 * 27 18 16 50 50 H 1.08996 * 110.96836 * 155.19151 * 28 27 18 51 51 H 1.08997 * 110.96945 * 278.94977 * 28 27 18 52 52 H 1.08002 * 120.00058 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0001 -0.0016 6 6 5.7787 0.0000 -0.0028 7 6 3.5806 -1.1969 -0.0027 8 6 4.3341 -2.5020 -0.0044 9 6 4.6932 -2.8767 1.4105 10 8 4.3695 -2.1547 2.3297 11 7 5.3748 -4.0135 1.6542 12 6 5.7234 -4.3780 3.0296 13 6 6.6533 -3.3470 3.6864 14 6 7.9283 -4.1058 4.1072 15 6 7.4583 -5.5704 4.2776 16 6 6.4403 -5.7497 3.1331 17 1 6.9201 -6.0274 2.1947 18 7 5.4297 -6.7354 3.5423 19 6 5.6629 -8.0635 3.7808 20 1 6.6577 -8.4668 3.6626 21 6 4.6194 -8.8926 4.1690 22 7 3.4070 -8.4011 4.3131 23 14 4.9361 -10.7059 4.4870 24 1 5.2944 -10.9030 5.9145 25 1 3.7115 -11.4848 4.1719 26 1 6.0537 -11.1715 3.6272 27 6 4.1255 -6.0592 3.6599 28 6 4.4723 -4.5728 3.9222 29 6 2.1980 -1.1969 -0.0059 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 1.6583 2.1327 0.0004 34 1 4.1204 2.1326 -0.0010 35 1 6.1413 0.0009 -1.0307 36 1 6.1424 0.8896 0.5116 37 1 6.1424 -0.8904 0.5101 38 1 5.2446 -2.3951 -0.5942 39 1 3.7090 -3.2819 -0.4393 40 1 5.6340 -4.5908 0.9190 41 1 6.9044 -2.5627 2.9723 42 1 6.1702 -2.9133 4.5620 43 1 8.6879 -4.0369 3.3285 44 1 8.3121 -3.7140 5.0492 45 1 8.2953 -6.2589 4.1618 46 1 6.9779 -5.7101 5.2460 47 1 2.6779 -8.9804 4.5847 48 1 3.5613 -6.1592 2.7327 49 1 3.5593 -6.4699 4.4958 50 1 3.6597 -3.9205 3.6025 51 1 4.7128 -4.4078 4.9724 52 1 1.6580 -2.1322 -0.0102 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992169629.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:18 Heat of formation + Delta-G solvation = 1.605761 kcal Electronic energy + Delta-G solvation = -30895.891332 eV Core-core repulsion = 27052.996146 eV Total energy + Delta-G solvation = -3842.895186 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.41545 -39.53451 -37.91703 -34.30769 -34.16773 -33.36829 -32.37353 -31.40021 -29.83239 -29.35710 -27.91477 -26.72246 -25.74565 -24.82393 -23.82527 -22.39892 -21.36248 -20.28550 -19.95624 -19.25211 -18.74310 -17.01822 -16.74956 -16.11524 -15.96135 -15.68128 -14.95987 -14.82599 -14.56448 -14.21047 -14.03266 -13.76267 -13.52560 -13.35611 -13.08389 -13.03739 -12.89876 -12.78637 -12.68893 -12.18313 -12.09211 -11.98674 -11.72892 -11.60079 -11.52267 -11.15884 -11.00331 -10.98114 -10.91457 -10.85515 -10.65286 -10.51397 -10.14398 -10.05304 -9.92089 -9.72264 -9.61279 -9.32570 -8.74458 -8.65413 -8.49096 -8.38295 -6.85151 -5.64150 -3.07589 1.31605 1.39633 2.94506 3.38630 3.40791 3.44302 3.45921 3.82016 4.47347 4.59788 4.71427 4.83097 4.86780 4.96284 5.11678 5.15885 5.18384 5.22654 5.32848 5.37719 5.45064 5.49947 5.50364 5.52079 5.54152 5.67427 5.68907 5.71139 5.84589 5.85990 5.89046 6.02189 6.08761 6.09106 6.16667 6.18519 6.30045 6.38740 6.42072 6.44127 6.56397 6.56924 6.62269 6.64387 6.80652 6.82276 7.01942 7.02133 7.17197 7.55733 7.65196 7.85433 7.91269 8.37462 8.58545 9.21802 9.82848 10.47214 11.38103 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015372 B = 0.002932 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.113821 B = 9547.781933 C =10768.593159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.093 4.093 3 C -0.120 4.120 4 C -0.118 4.118 5 C -0.075 4.075 6 C -0.115 4.115 7 C -0.055 4.055 8 C -0.107 4.107 9 C 0.515 3.485 10 O -0.527 6.527 11 N -0.707 5.707 12 C 0.162 3.838 13 C -0.110 4.110 14 C -0.124 4.124 15 C -0.128 4.128 16 C 0.163 3.837 17 H 0.044 0.956 18 N -0.596 5.596 19 C -0.220 4.220 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.920 5.920 23 Si 0.913 3.087 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.153 3.847 28 C -0.142 4.142 29 C -0.103 4.103 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.398 0.602 41 H 0.056 0.944 42 H 0.068 0.932 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.074 0.926 47 H 0.251 0.749 48 H 0.008 0.992 49 H 0.107 0.893 50 H 0.067 0.933 51 H 0.066 0.934 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.919 17.195 -10.577 20.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 C -0.138 4.138 4 C -0.136 4.136 5 C -0.075 4.075 6 C -0.171 4.171 7 C -0.056 4.056 8 C -0.147 4.147 9 C 0.300 3.700 10 O -0.403 6.403 11 N -0.358 5.358 12 C 0.075 3.925 13 C -0.149 4.149 14 C -0.163 4.163 15 C -0.169 4.169 16 C 0.055 3.945 17 H 0.062 0.938 18 N -0.320 5.320 19 C -0.348 4.348 20 H 0.094 0.906 21 C -0.206 4.206 22 N -0.568 5.568 23 Si 0.743 3.257 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.208 1.208 27 C 0.028 3.972 28 C -0.181 4.181 29 C -0.121 4.121 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.232 0.768 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.092 0.908 47 H 0.062 0.938 48 H 0.026 0.974 49 H 0.125 0.875 50 H 0.086 0.914 51 H 0.084 0.916 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.536 17.494 -9.851 20.136 hybrid contribution 0.232 -1.281 -0.234 1.323 sum 1.768 16.213 -10.085 19.176 Atomic orbital electron populations 1.20768 0.91353 1.02808 1.02018 1.19820 0.95935 0.93084 1.00440 1.20943 0.94134 0.97302 1.01450 1.20916 0.94130 0.97212 1.01360 1.19645 0.95796 0.92560 0.99474 1.20802 0.91540 1.03053 1.01738 1.19107 0.93280 0.93145 1.00056 1.20730 1.01871 0.96361 0.95739 1.20303 0.77923 0.81098 0.90670 1.90710 1.52734 1.51012 1.45801 1.45890 1.57414 1.23482 1.08969 1.21589 0.95892 0.94031 0.80956 1.22269 0.95351 0.96998 1.00283 1.22363 0.96889 0.96679 1.00326 1.22827 0.98912 0.94232 1.00896 1.21660 0.90336 0.87294 0.95251 0.93798 1.44529 1.03560 1.04610 1.79292 1.19030 0.94613 0.82632 1.38553 0.90551 1.24782 0.95456 0.98262 1.02108 1.69810 0.99667 1.33557 1.53797 0.86103 0.76859 0.84703 0.77999 1.21634 1.21744 1.20808 1.21964 0.87977 0.86090 1.01123 1.23324 0.96516 1.00263 0.98018 1.20875 0.93327 0.97691 1.00173 0.91421 0.91477 0.91729 0.86428 0.86336 0.91372 0.91613 0.91527 0.88203 0.88152 0.76828 0.92482 0.91299 0.92414 0.92310 0.92367 0.90751 0.93783 0.97397 0.87533 0.91404 0.91586 0.86178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 10.01 36.00 0.36 -0.66 16 2 C -0.09 -1.08 5.88 -104.63 -0.62 -1.69 16 3 C -0.12 -1.32 9.70 -39.58 -0.38 -1.71 16 4 C -0.12 -1.33 9.70 -39.58 -0.38 -1.71 16 5 C -0.07 -0.90 5.88 -104.63 -0.62 -1.52 16 6 C -0.11 -1.16 9.22 36.01 0.33 -0.83 16 7 C -0.06 -0.71 4.37 -104.62 -0.46 -1.17 16 8 C -0.11 -1.24 5.15 -29.03 -0.15 -1.39 16 9 C 0.51 7.81 6.24 -10.98 -0.07 7.74 16 10 O -0.53 -9.81 13.86 5.56 0.08 -9.73 16 11 N -0.71 -10.85 5.23 -45.36 -0.24 -11.09 16 12 C 0.16 2.88 0.77 -129.38 -0.10 2.78 16 13 C -0.11 -1.79 5.30 -25.79 -0.14 -1.93 16 14 C -0.12 -1.86 6.84 -25.17 -0.17 -2.03 16 15 C -0.13 -2.32 6.21 -25.17 -0.16 -2.47 16 16 C 0.16 3.21 3.64 -65.91 -0.24 2.97 16 17 H 0.04 0.85 8.00 -51.93 -0.42 0.43 16 18 N -0.60 -14.58 3.04 -161.47 -0.49 -15.07 16 19 C -0.22 -5.90 10.01 -15.06 -0.15 -6.05 16 20 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 21 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 22 N -0.92 -26.56 10.07 55.49 0.56 -26.01 16 23 Si 0.91 21.79 29.55 -169.99 -5.02 16.76 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 C 0.15 3.75 5.91 -2.58 -0.02 3.73 16 28 C -0.14 -2.95 5.71 -24.74 -0.14 -3.09 16 29 C -0.10 -1.30 9.34 -39.58 -0.37 -1.67 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 32 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 33 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.61 8.09 -51.93 -0.42 0.20 16 37 H 0.07 0.74 6.16 -51.93 -0.32 0.42 16 38 H 0.10 0.92 6.99 -51.93 -0.36 0.56 16 39 H 0.10 1.03 8.05 -51.93 -0.42 0.61 16 40 H 0.40 5.32 8.53 -40.82 -0.35 4.97 16 41 H 0.06 0.90 7.60 -51.93 -0.39 0.50 16 42 H 0.07 1.19 7.37 -51.93 -0.38 0.80 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.07 1.50 8.09 -51.93 -0.42 1.08 16 47 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 48 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 49 H 0.11 2.97 5.82 -51.93 -0.30 2.67 16 50 H 0.07 1.45 6.54 -51.93 -0.34 1.11 16 51 H 0.07 1.38 7.62 -51.93 -0.40 0.99 16 52 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 402.64 15.07 6.07 6.07 Total: -1.00 -31.62 402.64 -11.32 -42.94 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -8.71 Total: 7.20 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -3.56 Total: -11.07 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -0.17 Total: -52.17 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.08 Total: -9.73 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.62 -11.32 -42.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992169629.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.546 kcal (2) G-P(sol) polarization free energy of solvation -31.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds