Wall clock time and date at job start Wed Apr 1 2020 02:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38256 * 120.00325 * 2 1 4 4 C 1.38211 * 120.00062 * 180.25725 * 3 2 1 5 5 C 1.38258 * 119.99779 * 359.50247 * 4 3 2 6 6 C 1.50708 * 119.99998 * 180.27916 * 5 4 3 7 7 C 1.38211 * 120.00163 * 0.44980 * 5 4 3 8 8 C 1.50697 * 120.00242 * 179.82927 * 7 5 4 9 9 C 1.50708 * 109.46902 * 84.97804 * 8 7 5 10 10 O 1.21273 * 119.99801 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99769 * 179.97438 * 9 8 7 12 12 C 1.46496 * 119.99988 * 179.97438 * 11 9 8 13 13 C 1.53591 * 112.23975 * 59.64969 * 12 11 9 14 14 C 1.54176 * 106.69360 * 122.01961 * 13 12 11 15 15 C 1.54755 * 104.36773 * 24.13524 * 14 13 12 16 16 C 1.54777 * 103.21143 * 322.66488 * 15 14 13 17 17 H 1.08995 * 111.87333 * 275.08238 * 16 15 14 18 18 N 1.46983 * 109.48841 * 150.54865 * 16 15 14 19 19 C 1.36943 * 125.57347 * 65.52024 * 18 16 15 20 20 H 1.08001 * 120.00135 * 359.97438 * 19 18 16 21 21 C 1.38814 * 119.99562 * 180.02562 * 19 18 16 22 22 N 1.31618 * 120.00157 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99639 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47270 * 59.99574 * 23 21 19 25 25 H 1.48501 * 109.47039 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47259 * 299.99649 * 23 21 19 27 27 C 1.47367 * 108.84347 * 245.50080 * 18 16 15 28 28 C 1.54919 * 112.33465 * 295.64576 * 12 11 9 29 29 C 1.38215 * 119.99534 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.46776 * 89.99934 * 1 2 3 31 31 H 1.08993 * 109.47429 * 210.00606 * 1 2 3 32 32 H 1.08998 * 109.46961 * 330.00857 * 1 2 3 33 33 H 1.08002 * 119.99676 * 359.97122 * 3 2 1 34 34 H 1.07998 * 120.00348 * 179.72205 * 4 3 2 35 35 H 1.08998 * 109.47249 * 270.17007 * 6 5 4 36 36 H 1.09000 * 109.46720 * 30.17232 * 6 5 4 37 37 H 1.09004 * 109.46752 * 150.17214 * 6 5 4 38 38 H 1.09000 * 109.47788 * 204.97668 * 8 7 5 39 39 H 1.09000 * 109.47559 * 324.98038 * 8 7 5 40 40 H 0.97001 * 120.00101 * 0.02562 * 11 9 8 41 41 H 1.08994 * 110.01476 * 240.47772 * 13 12 11 42 42 H 1.08993 * 110.01557 * 1.87339 * 13 12 11 43 43 H 1.08995 * 109.98511 * 265.59721 * 14 13 12 44 44 H 1.09003 * 110.91287 * 143.13401 * 14 13 12 45 45 H 1.08997 * 110.67215 * 204.23867 * 15 14 13 46 46 H 1.09001 * 110.67301 * 81.10121 * 15 14 13 47 47 H 0.97000 * 119.99708 * 180.02562 * 22 21 19 48 48 H 1.09010 * 110.36782 * 143.52379 * 27 18 16 49 49 H 1.08992 * 110.36741 * 265.73872 * 27 18 16 50 50 H 1.08998 * 110.96611 * 31.90654 * 28 12 11 51 51 H 1.08999 * 110.96894 * 155.66187 * 28 12 11 52 52 H 1.07996 * 120.00479 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 -0.0054 5 6 4.2717 -0.0001 -0.0004 6 6 5.7788 -0.0002 0.0001 7 6 3.5806 -1.1971 0.0006 8 6 4.3340 -2.5022 0.0022 9 6 4.6924 -2.8736 1.4182 10 8 4.3675 -2.1500 2.3356 11 7 5.3730 -4.0104 1.6650 12 6 5.7219 -4.3712 3.0413 13 6 4.4815 -4.5272 3.9336 14 6 4.5194 -5.9615 4.4978 15 6 6.0144 -6.3571 4.4412 16 6 6.5019 -5.7098 3.1224 17 1 6.3062 -6.3476 2.2605 18 7 7.9276 -5.3721 3.2396 19 6 8.9509 -6.2719 3.3750 20 1 8.7390 -7.3306 3.4032 21 6 10.2606 -5.8233 3.4770 22 7 10.5188 -4.5331 3.4431 23 14 11.6567 -7.0508 3.6609 24 1 11.6781 -7.9561 2.4839 25 1 12.9479 -6.3225 3.7482 26 1 11.4539 -7.8497 4.8962 27 6 8.0755 -3.9068 3.1872 28 6 6.7005 -3.3577 3.6855 29 6 2.1980 -1.1970 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8898 0.5139 32 1 -0.3633 0.8900 0.5137 33 1 1.6584 2.1326 -0.0005 34 1 4.1205 2.1325 -0.0099 35 1 6.1425 -0.0013 -1.0274 36 1 6.1419 0.8903 0.5132 37 1 6.1418 -0.8898 0.5150 38 1 3.7091 -3.2831 -0.4311 39 1 5.2447 -2.3968 -0.5873 40 1 5.6325 -4.5894 0.9312 41 1 4.5226 -3.8147 4.7574 42 1 3.5772 -4.3677 3.3465 43 1 3.9250 -6.6248 3.8695 44 1 4.1571 -5.9849 5.5256 45 1 6.1245 -7.4408 4.4014 46 1 6.5540 -5.9456 5.2942 47 1 11.4340 -4.2197 3.5141 48 1 8.8715 -3.5816 3.8573 49 1 8.2829 -3.5827 2.1675 50 1 6.5316 -2.3527 3.2988 51 1 6.6198 -3.3744 4.7724 52 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992169634.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:22 Heat of formation + Delta-G solvation = 1.437543 kcal Electronic energy + Delta-G solvation = -30915.955454 eV Core-core repulsion = 27073.052973 eV Total energy + Delta-G solvation = -3842.902481 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.40157 -39.51509 -37.89374 -34.30929 -34.14069 -33.36424 -32.36807 -31.37569 -29.79083 -29.32654 -27.90527 -26.72245 -25.72277 -24.78814 -23.84967 -22.39910 -21.35875 -20.27820 -19.99343 -19.23615 -18.72651 -17.01173 -16.73970 -16.10386 -15.95749 -15.66530 -14.95097 -14.84038 -14.55391 -14.23606 -14.00203 -13.75817 -13.52027 -13.32710 -13.11166 -12.99820 -12.86043 -12.76923 -12.68191 -12.19965 -12.04506 -11.96307 -11.71992 -11.61677 -11.50846 -11.13618 -11.01048 -10.97049 -10.90107 -10.84590 -10.67602 -10.52397 -10.16040 -10.05287 -9.93796 -9.70944 -9.61251 -9.33756 -8.75006 -8.66380 -8.48655 -8.36960 -6.86154 -5.64823 -3.08218 1.32323 1.39476 2.94777 3.38657 3.41448 3.44024 3.44829 3.82647 4.46953 4.59562 4.72270 4.83499 4.87059 4.97728 5.12855 5.15554 5.19201 5.22134 5.33712 5.39185 5.43395 5.48306 5.51879 5.52956 5.65122 5.66905 5.68765 5.71319 5.84077 5.88836 5.93011 6.01898 6.09328 6.09678 6.17253 6.23581 6.31176 6.36608 6.41749 6.42835 6.55289 6.56644 6.60906 6.66690 6.79490 6.79610 7.00774 7.02408 7.16723 7.54225 7.63739 7.85248 7.90787 8.36535 8.58744 9.21155 9.82144 10.46524 11.37378 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017413 B = 0.002865 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.612342 B = 9770.306512 C =10837.394143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.096 4.096 3 C -0.120 4.120 4 C -0.118 4.118 5 C -0.070 4.070 6 C -0.118 4.118 7 C -0.057 4.057 8 C -0.107 4.107 9 C 0.514 3.486 10 O -0.527 6.527 11 N -0.708 5.708 12 C 0.162 3.838 13 C -0.109 4.109 14 C -0.124 4.124 15 C -0.129 4.129 16 C 0.162 3.838 17 H 0.044 0.956 18 N -0.596 5.596 19 C -0.221 4.221 20 H 0.076 0.924 21 C -0.010 4.010 22 N -0.921 5.921 23 Si 0.913 3.087 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.285 1.285 27 C 0.154 3.846 28 C -0.141 4.141 29 C -0.104 4.104 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.398 0.602 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.057 0.943 46 H 0.073 0.927 47 H 0.252 0.748 48 H 0.106 0.894 49 H 0.011 0.989 50 H 0.064 0.936 51 H 0.067 0.933 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.026 6.840 -8.207 20.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.096 4.096 3 C -0.138 4.138 4 C -0.136 4.136 5 C -0.070 4.070 6 C -0.175 4.175 7 C -0.057 4.057 8 C -0.147 4.147 9 C 0.300 3.700 10 O -0.403 6.403 11 N -0.358 5.358 12 C 0.076 3.924 13 C -0.148 4.148 14 C -0.162 4.162 15 C -0.169 4.169 16 C 0.054 3.946 17 H 0.062 0.938 18 N -0.319 5.319 19 C -0.349 4.349 20 H 0.094 0.906 21 C -0.206 4.206 22 N -0.569 5.569 23 Si 0.743 3.257 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.212 1.212 27 C 0.029 3.971 28 C -0.181 4.181 29 C -0.122 4.122 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.232 0.768 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.092 0.908 47 H 0.063 0.937 48 H 0.124 0.876 49 H 0.029 0.971 50 H 0.082 0.918 51 H 0.086 0.914 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.982 7.375 -7.524 19.985 hybrid contribution 0.890 -0.935 -0.324 1.330 sum -16.092 6.440 -7.848 19.027 Atomic orbital electron populations 1.20749 0.91447 1.02636 1.01947 1.19795 0.95823 0.93132 1.00874 1.20940 0.94142 0.97281 1.01402 1.20951 0.94113 0.97344 1.01157 1.19711 0.96005 0.92518 0.98767 1.20839 0.91197 1.03474 1.01943 1.19112 0.93220 0.93225 1.00145 1.20731 1.01983 0.96196 0.95804 1.20314 0.78077 0.80995 0.90650 1.90709 1.53169 1.50462 1.45997 1.45937 1.57001 1.23771 1.09106 1.21620 0.93863 0.96318 0.80619 1.22223 0.96993 0.96817 0.98779 1.22348 0.97684 0.96200 1.00018 1.22912 0.93888 1.00038 1.00108 1.21780 0.85902 0.91700 0.95246 0.93815 1.44501 0.99387 1.02624 1.85436 1.18990 0.85087 0.88322 1.42501 0.90608 1.24778 0.97213 0.96152 1.02414 1.69794 1.18455 1.11475 1.57166 0.86183 0.81631 0.79909 0.77931 1.21305 1.21645 1.21186 1.22210 0.93522 0.82500 0.98849 1.23530 0.97418 0.97654 0.99449 1.20805 0.93248 0.97482 1.00660 0.91479 0.91697 0.91753 0.86441 0.86228 0.91242 0.91437 0.91224 0.88404 0.87960 0.76771 0.91435 0.92259 0.92519 0.92261 0.92373 0.90795 0.93714 0.87627 0.97078 0.91780 0.91411 0.86432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.01 36.01 0.36 -0.55 16 2 C -0.10 -1.07 5.88 -104.62 -0.62 -1.68 16 3 C -0.12 -1.31 9.70 -39.58 -0.38 -1.70 16 4 C -0.12 -1.38 9.70 -39.58 -0.38 -1.76 16 5 C -0.07 -0.90 5.88 -104.62 -0.62 -1.51 16 6 C -0.12 -1.41 9.22 36.01 0.33 -1.08 16 7 C -0.06 -0.72 4.37 -104.63 -0.46 -1.18 16 8 C -0.11 -1.24 5.15 -29.03 -0.15 -1.39 16 9 C 0.51 7.79 6.20 -10.98 -0.07 7.72 16 10 O -0.53 -9.79 13.91 5.56 0.08 -9.71 16 11 N -0.71 -10.89 5.23 -45.35 -0.24 -11.12 16 12 C 0.16 2.89 0.71 -129.37 -0.09 2.80 16 13 C -0.11 -1.80 5.25 -25.81 -0.14 -1.93 16 14 C -0.12 -1.88 6.82 -25.19 -0.17 -2.05 16 15 C -0.13 -2.33 6.27 -24.87 -0.16 -2.49 16 16 C 0.16 3.19 3.60 -65.60 -0.24 2.96 16 17 H 0.04 0.85 7.99 -51.93 -0.42 0.43 16 18 N -0.60 -14.47 3.07 -160.27 -0.49 -14.96 16 19 C -0.22 -5.89 10.03 -15.06 -0.15 -6.05 16 20 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 21 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 22 N -0.92 -26.40 10.07 55.49 0.56 -25.84 16 23 Si 0.91 21.71 29.55 -169.99 -5.02 16.68 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 27 C 0.15 3.71 5.96 -1.84 -0.01 3.70 16 28 C -0.14 -2.89 5.85 -23.99 -0.14 -3.03 16 29 C -0.10 -1.24 9.34 -39.58 -0.37 -1.61 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 32 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 33 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 37 H 0.07 0.95 6.16 -51.93 -0.32 0.63 16 38 H 0.10 0.89 8.05 -51.93 -0.42 0.48 16 39 H 0.10 1.06 6.99 -51.93 -0.36 0.70 16 40 H 0.40 5.39 8.50 -40.82 -0.35 5.05 16 41 H 0.07 1.17 7.41 -51.93 -0.38 0.78 16 42 H 0.06 0.96 7.40 -51.93 -0.38 0.58 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.07 1.49 8.11 -51.93 -0.42 1.06 16 47 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 48 H 0.11 2.91 5.83 -51.92 -0.30 2.61 16 49 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 50 H 0.06 1.33 6.82 -51.93 -0.35 0.98 16 51 H 0.07 1.40 7.65 -51.93 -0.40 1.01 16 52 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 402.91 15.07 6.07 6.07 Total: -1.00 -31.28 402.91 -11.30 -42.58 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -8.72 Total: 7.51 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -3.54 Total: -11.21 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: -0.17 Total: -51.93 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.08 Total: -9.71 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.28 -11.30 -42.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992169634.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.019 kcal (2) G-P(sol) polarization free energy of solvation -31.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds