Wall clock time and date at job start Wed Apr 1 2020 03:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50693 * 109.47314 * 2 1 4 4 C 1.38238 * 120.00001 * 90.00223 * 3 2 1 5 5 C 1.38238 * 120.00223 * 179.97438 * 4 3 2 6 6 C 1.38241 * 119.99663 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.99886 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47464 * 89.99457 * 7 6 5 9 9 O 1.21291 * 120.00088 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00480 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00224 * 180.02562 * 10 8 7 12 12 C 1.51217 * 111.07103 * 78.37925 * 11 10 8 13 13 C 1.55693 * 104.61077 * 84.53982 * 12 11 10 14 14 C 1.56285 * 105.93279 * 7.25108 * 13 12 11 15 15 C 1.50456 * 102.23623 * 23.56839 * 14 13 12 16 16 H 1.08995 * 106.66448 * 67.48799 * 15 14 13 17 17 N 1.42708 * 128.97788 * 198.86464 * 15 14 13 18 18 C 1.36929 * 127.10282 * 332.64699 * 17 15 14 19 19 H 1.08004 * 120.00341 * 359.97438 * 18 17 15 20 20 C 1.38815 * 120.00031 * 179.70428 * 18 17 15 21 21 N 1.31617 * 119.99916 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99958 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46986 * 90.00489 * 22 20 18 24 24 H 1.48496 * 109.47029 * 210.00506 * 22 20 18 25 25 H 1.48499 * 109.47352 * 330.00336 * 22 20 18 26 26 C 1.49292 * 105.78989 * 152.38294 * 17 15 14 27 27 C 1.52136 * 111.08661 * 298.98193 * 11 10 8 28 28 C 1.38233 * 120.00004 * 0.26628 * 6 5 4 29 29 C 1.38229 * 120.00140 * 359.52617 * 28 6 5 30 30 H 1.09001 * 109.47501 * 59.99819 * 1 2 3 31 31 H 1.09001 * 109.47368 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47051 * 299.99890 * 1 2 3 33 33 H 1.08999 * 109.47051 * 240.00110 * 2 1 3 34 34 H 1.09001 * 109.47501 * 120.00181 * 2 1 3 35 35 H 1.08001 * 120.00222 * 359.97350 * 4 3 2 36 36 H 1.07998 * 120.00174 * 179.97438 * 5 4 3 37 37 H 1.09006 * 109.47102 * 329.99606 * 7 6 5 38 38 H 1.08997 * 109.47208 * 209.99849 * 7 6 5 39 39 H 0.97000 * 119.99650 * 0.02562 * 10 8 7 40 40 H 1.09003 * 110.41102 * 203.32583 * 12 11 10 41 41 H 1.09001 * 110.40957 * 325.64073 * 12 11 10 42 42 H 1.08990 * 110.15775 * 126.36753 * 13 12 11 43 43 H 1.08998 * 110.15585 * 248.06360 * 13 12 11 44 44 H 1.08997 * 110.96891 * 142.37685 * 14 13 12 45 45 H 1.09008 * 110.97073 * 266.10623 * 14 13 12 46 46 H 0.97000 * 120.00284 * 179.97438 * 21 20 18 47 47 H 1.09007 * 110.04606 * 110.84695 * 26 17 15 48 48 H 1.09000 * 110.05062 * 232.31320 * 26 17 15 49 49 H 1.08995 * 111.15520 * 168.15891 * 27 11 10 50 50 H 1.09000 * 111.14762 * 43.92631 * 27 11 10 51 51 H 1.08003 * 119.99745 * 179.72836 * 28 6 5 52 52 H 1.08003 * 120.00363 * 180.26569 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2628 2.0724 1.1972 5 6 2.7241 3.3755 1.1972 6 6 2.9555 4.0268 0.0000 7 6 3.4590 5.4472 0.0000 8 6 4.9659 5.4461 0.0007 9 8 5.5716 4.3952 0.0017 10 7 5.6408 6.6127 0.0014 11 6 7.1057 6.6115 0.0015 12 6 7.6493 6.3276 -1.3807 13 6 7.6579 7.7127 -2.0916 14 6 7.2848 8.7606 -0.9938 15 6 7.6784 8.0498 0.2725 16 1 8.7651 7.9665 0.2594 17 7 7.2683 8.3123 1.6139 18 6 6.8656 9.5130 2.1346 19 1 6.8361 10.3913 1.5067 20 6 6.4899 9.6003 3.4681 21 7 6.5212 8.5290 4.2321 22 14 5.9398 11.2382 4.1782 23 1 4.4710 11.3812 4.0127 24 1 6.2828 11.2920 5.6219 25 1 6.6283 12.3435 3.4643 26 6 7.3628 7.0061 2.3307 27 6 7.6524 5.9227 1.2429 28 6 2.7203 3.3769 -1.1971 29 6 2.2631 2.0724 -1.1971 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.0824 1.5634 2.1325 36 1 2.9038 3.8847 2.1325 37 1 3.0956 5.9615 0.8898 38 1 3.0964 5.9612 -0.8902 39 1 5.1564 7.4531 0.0018 40 1 8.6610 5.9270 -1.3165 41 1 6.9985 5.6311 -1.9094 42 1 8.6498 7.9239 -2.4908 43 1 6.9197 7.7280 -2.8933 44 1 7.8529 9.6816 -1.1246 45 1 6.2135 8.9619 -0.9946 46 1 6.2590 8.5901 5.1640 47 1 8.1769 7.0354 3.0550 48 1 6.4214 6.7874 2.8346 49 1 8.7221 5.7350 1.1498 50 1 7.1100 5.0007 1.4521 51 1 2.8969 3.8872 -2.1324 52 1 2.0834 1.5631 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992260042.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:56 Heat of formation + Delta-G solvation = 13.102483 kcal Electronic energy + Delta-G solvation = -30726.055328 eV Core-core repulsion = 26883.658677 eV Total energy + Delta-G solvation = -3842.396651 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.50165 -39.49761 -37.89955 -34.62169 -34.43440 -32.94152 -31.82896 -31.13158 -30.83760 -29.78564 -27.21990 -26.97531 -25.65090 -24.05421 -23.38255 -22.66302 -21.14465 -20.51772 -20.15109 -19.54651 -18.66773 -16.77423 -16.47418 -16.17625 -15.78770 -15.68489 -15.16246 -14.75143 -14.54336 -14.36134 -13.95446 -13.84946 -13.77771 -13.64838 -13.49265 -13.20749 -12.84704 -12.58442 -12.33196 -12.10776 -11.93469 -11.86650 -11.71090 -11.41187 -11.33308 -11.21592 -11.02495 -10.94860 -10.83772 -10.81800 -10.79434 -10.48109 -10.27887 -9.99354 -9.96534 -9.71396 -9.54516 -9.06429 -8.80420 -8.68294 -8.40541 -8.38881 -6.87326 -5.76367 -3.11008 1.39870 1.52296 3.15079 3.35311 3.41402 3.43274 3.60196 4.00426 4.43138 4.63894 4.65633 4.75864 4.87994 5.02110 5.07204 5.16646 5.20398 5.22580 5.36740 5.38304 5.41492 5.45396 5.53264 5.60545 5.63460 5.68270 5.71249 5.74604 5.84059 5.85043 5.94206 5.97246 5.99802 6.14037 6.14447 6.16600 6.28104 6.31412 6.36655 6.43804 6.48941 6.51167 6.66299 6.71300 6.72351 6.84864 6.91869 7.09891 7.26191 7.52187 7.60283 7.76860 8.12744 8.18318 8.79641 9.11425 9.78042 10.47791 11.35608 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012711 B = 0.003025 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.338813 B = 9253.888343 C =10573.571540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.089 4.089 4 C -0.117 4.117 5 C -0.100 4.100 6 C -0.058 4.058 7 C -0.107 4.107 8 C 0.516 3.484 9 O -0.541 6.541 10 N -0.691 5.691 11 C 0.134 3.866 12 C -0.111 4.111 13 C -0.115 4.115 14 C -0.115 4.115 15 C 0.158 3.842 16 H 0.018 0.982 17 N -0.582 5.582 18 C -0.231 4.231 19 H 0.078 0.922 20 C -0.004 4.004 21 N -0.917 5.917 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.181 3.819 27 C -0.142 4.142 28 C -0.104 4.104 29 C -0.119 4.119 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.400 0.600 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.253 0.747 47 H 0.033 0.967 48 H 0.063 0.937 49 H 0.062 0.938 50 H 0.077 0.923 51 H 0.117 0.883 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.507 -10.857 -11.776 18.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.089 4.089 4 C -0.135 4.135 5 C -0.118 4.118 6 C -0.059 4.059 7 C -0.147 4.147 8 C 0.302 3.698 9 O -0.418 6.418 10 N -0.342 5.342 11 C 0.046 3.954 12 C -0.150 4.150 13 C -0.154 4.154 14 C -0.154 4.154 15 C 0.047 3.953 16 H 0.035 0.965 17 N -0.305 5.305 18 C -0.359 4.359 19 H 0.096 0.904 20 C -0.201 4.201 21 N -0.564 5.564 22 Si 0.739 3.261 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.057 3.943 27 C -0.181 4.181 28 C -0.122 4.122 29 C -0.137 4.137 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.120 0.880 38 H 0.115 0.885 39 H 0.235 0.765 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.063 0.937 47 H 0.052 0.948 48 H 0.082 0.918 49 H 0.080 0.920 50 H 0.095 0.905 51 H 0.135 0.865 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.118 -11.485 -11.518 18.179 hybrid contribution -0.423 1.399 0.555 1.563 sum -8.541 -10.086 -10.962 17.171 Atomic orbital electron populations 1.21745 0.94926 1.01437 1.02197 1.20515 0.95977 0.92958 1.02663 1.19821 0.99797 0.96014 0.93298 1.20941 1.00369 0.94804 0.97366 1.21023 0.98296 0.94814 0.97671 1.19282 0.98334 0.94818 0.93425 1.20710 0.93671 0.95235 1.05062 1.20283 0.89053 0.84069 0.76431 1.90664 1.70082 1.31266 1.49810 1.45684 1.06614 1.08071 1.73819 1.21447 0.79702 1.00775 0.93443 1.21879 1.00997 0.96678 0.95461 1.22799 1.00826 0.94256 0.97476 1.21840 1.01168 0.97731 0.94662 1.20686 0.96377 0.91139 0.87058 0.96515 1.43640 1.77519 1.06075 1.03274 1.19002 1.37623 0.85611 0.93639 0.90369 1.24795 1.01644 0.97266 0.96417 1.69926 1.53341 1.26777 1.06369 0.86173 0.78373 0.83089 0.78421 1.21646 1.21724 1.20737 1.21983 1.00788 0.80789 0.90745 1.22815 0.99688 0.99910 0.95665 1.20914 0.99149 0.94846 0.97296 1.20891 1.00768 0.94789 0.97271 0.92639 0.92622 0.92555 0.91256 0.91177 0.86366 0.86072 0.87976 0.88535 0.76486 0.91265 0.91740 0.91992 0.92235 0.91739 0.91843 0.93704 0.94839 0.91840 0.91964 0.90466 0.86481 0.86515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.89 37.16 0.37 -0.76 16 2 C -0.08 -0.75 6.06 -27.89 -0.17 -0.92 16 3 C -0.09 -1.04 5.13 -104.62 -0.54 -1.57 16 4 C -0.12 -1.46 9.70 -39.58 -0.38 -1.85 16 5 C -0.10 -1.39 9.70 -39.58 -0.38 -1.78 16 6 C -0.06 -0.81 4.37 -104.62 -0.46 -1.27 16 7 C -0.11 -1.43 5.83 -29.04 -0.17 -1.60 16 8 C 0.52 8.72 7.21 -10.99 -0.08 8.64 16 9 O -0.54 -10.78 14.16 5.55 0.08 -10.70 16 10 N -0.69 -11.83 4.48 -46.76 -0.21 -12.04 16 11 C 0.13 2.43 0.43 -130.90 -0.06 2.38 16 12 C -0.11 -1.73 6.18 -26.19 -0.16 -1.90 16 13 C -0.12 -1.58 6.94 -23.53 -0.16 -1.74 16 14 C -0.12 -1.87 6.47 -26.24 -0.17 -2.04 16 15 C 0.16 3.12 2.65 -68.94 -0.18 2.94 16 16 H 0.02 0.37 7.96 -51.93 -0.41 -0.05 16 17 N -0.58 -13.99 3.16 -162.93 -0.52 -14.50 16 18 C -0.23 -6.05 10.31 -15.06 -0.16 -6.21 16 19 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 20 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 16 21 N -0.92 -26.18 10.55 55.49 0.59 -25.59 16 22 Si 0.91 21.40 29.55 -169.99 -5.02 16.37 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 26 C 0.18 4.36 5.33 -0.76 0.00 4.35 16 27 C -0.14 -2.89 6.10 -25.44 -0.16 -3.05 16 28 C -0.10 -1.33 9.70 -39.59 -0.38 -1.71 16 29 C -0.12 -1.40 9.70 -39.58 -0.38 -1.79 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 34 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 35 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.10 1.32 8.09 -51.93 -0.42 0.90 16 38 H 0.10 1.05 8.08 -51.93 -0.42 0.63 16 39 H 0.40 6.67 7.59 -40.82 -0.31 6.36 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.06 1.03 7.74 -51.93 -0.40 0.63 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.06 1.01 7.20 -51.92 -0.37 0.64 16 46 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 47 H 0.03 0.89 7.98 -51.93 -0.41 0.47 16 48 H 0.06 1.70 7.05 -51.93 -0.37 1.34 16 49 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 50 H 0.08 1.65 6.27 -51.93 -0.33 1.33 16 51 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 52 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 408.08 15.07 6.15 6.15 Total: -1.00 -30.76 408.08 -11.56 -42.33 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -8.90 Total: 8.05 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -3.72 Total: -10.07 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: -0.14 Total: -52.13 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.08 Total: -10.70 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -30.76 -11.56 -42.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992260042.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.429 kcal (2) G-P(sol) polarization free energy of solvation -30.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds