Wall clock time and date at job start Wed Apr 1 2020 02:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38238 * 120.00477 * 2 1 4 4 C 1.38227 * 120.00348 * 179.97438 * 3 2 1 5 5 C 1.38234 * 120.00104 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99975 * 179.97438 * 5 4 3 7 7 C 1.50705 * 109.47339 * 90.00245 * 6 5 4 8 8 O 1.21275 * 119.99803 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00011 * 180.02562 * 7 6 5 10 10 C 1.48662 * 125.78555 * 359.97009 * 9 7 6 11 11 C 1.53065 * 103.44437 * 155.61997 * 10 9 7 12 12 H 1.08996 * 111.36234 * 284.02094 * 11 10 9 13 13 C 1.51619 * 116.67517 * 155.88630 * 11 10 9 14 14 C 1.53810 * 107.09328 * 183.79075 * 13 11 10 15 15 C 1.52523 * 111.70615 * 57.49514 * 14 13 11 16 16 C 1.53837 * 111.66285 * 305.95531 * 15 14 13 17 17 H 1.08999 * 109.93862 * 297.73588 * 16 15 14 18 18 N 1.46496 * 109.94356 * 176.57680 * 16 15 14 19 19 C 1.36945 * 119.99572 * 85.00041 * 18 16 15 20 20 H 1.07999 * 120.00014 * 359.97438 * 19 18 16 21 21 C 1.38806 * 119.99730 * 180.02562 * 19 18 16 22 22 N 1.31619 * 120.00255 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00062 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46719 * 89.99670 * 23 21 19 25 25 H 1.48491 * 109.47392 * 209.99876 * 23 21 19 26 26 H 1.48498 * 109.46683 * 330.00248 * 23 21 19 27 27 C 1.51443 * 107.04118 * 57.19453 * 16 15 14 28 28 H 1.09006 * 109.86784 * 54.18889 * 27 16 15 29 29 C 1.49080 * 125.69626 * 180.24331 * 9 7 6 30 30 C 1.38237 * 120.00006 * 0.25076 * 5 4 3 31 31 C 1.38232 * 119.99702 * 359.49483 * 30 5 4 32 32 H 1.08992 * 109.47256 * 89.99716 * 1 2 3 33 33 H 1.09002 * 109.46785 * 209.99739 * 1 2 3 34 34 H 1.09002 * 109.46581 * 329.99081 * 1 2 3 35 35 H 1.08002 * 119.99224 * 0.02562 * 3 2 1 36 36 H 1.08004 * 120.00259 * 180.02562 * 4 3 2 37 37 H 1.08998 * 109.47354 * 330.00086 * 6 5 4 38 38 H 1.09002 * 109.47070 * 209.99702 * 6 5 4 39 39 H 1.09001 * 110.62480 * 37.13830 * 10 9 7 40 40 H 1.08990 * 110.62769 * 274.11434 * 10 9 7 41 41 H 1.09002 * 109.94362 * 64.36764 * 13 11 10 42 42 H 1.08998 * 109.94426 * 303.20589 * 13 11 10 43 43 H 1.09008 * 109.03384 * 178.07290 * 14 13 11 44 44 H 1.09005 * 109.03491 * 296.92164 * 14 13 11 45 45 H 1.09005 * 109.03923 * 66.51661 * 15 14 13 46 46 H 1.09004 * 109.04211 * 185.38868 * 15 14 13 47 47 H 0.96992 * 120.00263 * 264.99949 * 18 16 15 48 48 H 0.97004 * 119.99939 * 180.02562 * 22 21 19 49 49 H 1.09006 * 110.39675 * 58.01077 * 29 9 7 50 50 H 1.09001 * 110.29661 * 295.98192 * 29 9 7 51 51 H 1.08001 * 120.00270 * 179.72706 * 30 5 4 52 52 H 1.08004 * 119.99780 * 180.24638 * 31 30 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 0.0000 0.0005 6 6 5.7787 0.0000 0.0005 7 6 6.2811 -0.0001 1.4214 8 8 5.4930 0.0003 2.3432 9 7 7.6061 0.0004 1.6676 10 6 8.6811 0.0004 0.6408 11 6 9.8749 0.6156 1.3753 12 1 9.7664 1.6956 1.4744 13 6 11.2525 0.2663 0.8472 14 6 12.2772 0.9147 1.7935 15 6 12.0914 0.4457 3.2329 16 6 10.6485 0.6639 3.7195 17 1 10.4102 1.7275 3.7110 18 7 10.4913 0.1276 5.0737 19 6 10.8273 0.8949 6.1571 20 1 11.2085 1.8950 6.0132 21 6 10.6790 0.3866 7.4402 22 7 10.2158 -0.8329 7.6156 23 14 11.1380 1.4328 8.9182 24 1 9.9542 2.2139 9.3584 25 1 11.5905 0.5534 10.0258 26 1 12.2339 2.3628 8.5450 27 6 9.7400 -0.0781 2.7616 28 1 10.0528 -1.1196 2.6861 29 6 8.2402 -0.0047 3.0168 30 6 3.5805 -1.1972 -0.0052 31 6 2.1982 -1.1972 -0.0005 32 1 -0.3633 0.0001 -1.0276 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3632 0.8899 0.5140 35 1 1.6582 2.1324 0.0004 36 1 4.1206 2.1324 0.0010 37 1 6.1420 0.8899 -0.5133 38 1 6.1420 -0.8901 -0.5133 39 1 8.3968 0.6160 -0.2127 40 1 8.9086 -1.0170 0.3229 41 1 11.3754 0.6616 -0.1612 42 1 11.3850 -0.8156 0.8409 43 1 13.2823 0.6542 1.4615 44 1 12.1612 1.9979 1.7547 45 1 12.3309 -0.6159 3.2947 46 1 12.7723 1.0007 3.8784 47 1 10.1493 -0.7707 5.2029 48 1 10.1118 -1.1879 8.5123 49 1 7.9129 -0.8742 3.5871 50 1 7.9945 0.9116 3.5535 51 1 4.1205 -2.1325 -0.0097 52 1 1.6582 -2.1325 -0.0009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992737770.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:49 Heat of formation + Delta-G solvation = -12.496924 kcal Electronic energy + Delta-G solvation = -29694.771989 eV Core-core repulsion = 25851.265264 eV Total energy + Delta-G solvation = -3843.506725 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.45395 -39.59547 -38.32559 -35.47694 -33.99098 -33.88874 -31.56016 -31.01775 -30.88785 -29.58941 -28.80196 -26.77927 -25.76920 -24.30123 -23.19950 -22.83483 -21.22503 -20.73213 -20.41258 -19.71697 -19.10263 -17.22806 -16.71925 -16.39820 -16.01024 -15.54072 -15.18283 -15.04839 -14.87377 -14.23226 -14.19192 -14.09815 -13.89720 -13.60394 -13.52118 -13.11511 -12.91032 -12.86992 -12.70036 -12.58387 -12.36033 -12.15823 -11.97752 -11.89465 -11.75987 -11.45285 -11.24575 -11.05729 -10.99473 -10.89669 -10.81022 -10.49753 -10.26958 -10.20169 -10.15941 -9.77728 -9.71767 -9.46806 -8.98874 -8.87923 -8.58940 -8.49360 -6.95705 -5.75453 -3.04600 1.20180 1.34089 2.77642 3.01837 3.44717 3.49673 3.51296 3.67878 4.40020 4.51972 4.59372 4.63260 4.65015 4.78661 4.81673 4.90450 4.96834 5.02310 5.21509 5.27111 5.31268 5.36255 5.37164 5.38579 5.38688 5.48937 5.56740 5.59749 5.60455 5.62508 5.71084 5.82277 5.86667 5.93266 5.97179 5.97304 6.06425 6.07868 6.15958 6.26461 6.29366 6.40035 6.42445 6.48119 6.49966 6.52931 6.59521 6.63881 6.86509 6.91664 7.08599 7.65320 7.71089 8.31321 8.42606 9.54091 10.10538 10.45051 11.46985 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011945 B = 0.002493 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.592391 B =11230.551092 C =12993.074675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.091 4.091 3 C -0.120 4.120 4 C -0.101 4.101 5 C -0.068 4.068 6 C -0.097 4.097 7 C 0.525 3.475 8 O -0.531 6.531 9 N -0.625 5.625 10 C 0.110 3.890 11 C -0.106 4.106 12 H 0.085 0.915 13 C -0.100 4.100 14 C -0.115 4.115 15 C -0.138 4.138 16 C 0.196 3.804 17 H 0.049 0.951 18 N -0.722 5.722 19 C -0.239 4.239 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.905 3.095 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.103 4.103 28 H 0.077 0.923 29 C 0.127 3.873 30 C -0.101 4.101 31 C -0.120 4.120 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.061 0.939 47 H 0.384 0.616 48 H 0.255 0.745 49 H 0.073 0.927 50 H 0.074 0.926 51 H 0.119 0.881 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.530 1.180 -23.472 25.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.138 4.138 4 C -0.119 4.119 5 C -0.069 4.069 6 C -0.137 4.137 7 C 0.313 3.687 8 O -0.407 6.407 9 N -0.361 5.361 10 C -0.013 4.013 11 C -0.126 4.126 12 H 0.104 0.896 13 C -0.138 4.138 14 C -0.153 4.153 15 C -0.179 4.179 16 C 0.085 3.915 17 H 0.067 0.933 18 N -0.362 5.362 19 C -0.370 4.370 20 H 0.088 0.912 21 C -0.208 4.208 22 N -0.579 5.579 23 Si 0.736 3.264 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.123 4.123 28 H 0.095 0.905 29 C 0.006 3.994 30 C -0.119 4.119 31 C -0.138 4.138 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.080 0.920 47 H 0.218 0.782 48 H 0.065 0.935 49 H 0.091 0.909 50 H 0.092 0.908 51 H 0.137 0.863 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.004 1.301 -22.818 24.949 hybrid contribution 0.378 0.183 1.024 1.107 sum -9.626 1.484 -21.794 23.871 Atomic orbital electron populations 1.20778 0.91365 1.02785 1.02065 1.19906 0.95974 0.93289 0.99909 1.20958 0.94042 0.97476 1.01312 1.20954 0.94244 0.97366 0.99341 1.19278 0.93642 0.93622 1.00344 1.20656 0.93088 1.04901 0.95046 1.20130 0.80717 0.76838 0.91051 1.90755 1.54247 1.49340 1.46338 1.49492 1.04628 1.73333 1.08634 1.22081 0.87320 1.00757 0.91098 1.22086 0.93779 1.00740 0.95983 0.89634 1.21313 0.93303 1.00929 0.98285 1.21542 0.97899 1.00054 0.95810 1.22321 1.00535 1.01200 0.93811 1.19940 0.90794 0.95917 0.84831 0.93266 1.42399 1.77628 1.17045 0.99162 1.19203 1.35837 0.96741 0.85237 0.91230 1.24733 1.02042 0.96619 0.97425 1.69656 1.51748 1.15382 1.21163 0.86228 0.77990 0.79221 0.82977 1.21719 1.21825 1.20814 1.22150 0.93837 1.00713 0.95595 0.90462 1.21743 0.91793 1.03089 0.82748 1.20958 0.94246 0.97359 0.99355 1.20960 0.94042 0.97476 1.01299 0.91351 0.91604 0.91610 0.86192 0.86261 0.88231 0.88224 0.90789 0.91156 0.92111 0.91645 0.92714 0.92588 0.92720 0.92019 0.78215 0.93507 0.90908 0.90795 0.86254 0.86186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.01 36.00 0.36 -0.49 16 2 C -0.09 -0.94 5.88 -104.62 -0.62 -1.56 16 3 C -0.12 -1.28 9.70 -39.59 -0.38 -1.66 16 4 C -0.10 -1.16 9.70 -39.59 -0.38 -1.54 16 5 C -0.07 -0.81 4.37 -104.62 -0.46 -1.27 16 6 C -0.10 -1.01 4.86 -29.03 -0.14 -1.15 16 7 C 0.52 7.85 7.86 -10.98 -0.09 7.76 16 8 O -0.53 -10.49 16.38 5.56 0.09 -10.40 16 9 N -0.63 -8.82 3.40 -170.16 -0.58 -9.39 16 10 C 0.11 1.13 6.34 -2.81 -0.02 1.11 16 11 C -0.11 -1.24 2.51 -89.90 -0.23 -1.46 16 12 H 0.09 1.04 8.02 -51.93 -0.42 0.62 16 13 C -0.10 -1.04 5.70 -27.01 -0.15 -1.19 16 14 C -0.11 -1.41 5.84 -26.55 -0.15 -1.57 16 15 C -0.14 -2.28 5.45 -26.54 -0.14 -2.42 16 16 C 0.20 3.65 2.52 -68.28 -0.17 3.48 16 17 H 0.05 0.96 8.00 -51.93 -0.42 0.55 16 18 N -0.72 -17.50 5.06 -53.77 -0.27 -17.77 16 19 C -0.24 -6.52 9.95 -15.06 -0.15 -6.67 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -28.18 13.06 55.49 0.72 -27.46 16 23 Si 0.90 22.52 29.55 -169.99 -5.02 17.49 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 C -0.10 -1.59 1.79 -90.37 -0.16 -1.75 16 28 H 0.08 1.21 7.92 -51.93 -0.41 0.80 16 29 C 0.13 2.18 6.57 -2.96 -0.02 2.16 16 30 C -0.10 -1.16 9.70 -39.58 -0.38 -1.54 16 31 C -0.12 -1.28 9.70 -39.58 -0.38 -1.66 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 34 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 35 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 37 H 0.10 0.81 7.82 -51.93 -0.41 0.40 16 38 H 0.10 0.81 8.08 -51.93 -0.42 0.39 16 39 H 0.07 0.57 7.54 -51.93 -0.39 0.18 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.67 7.98 -51.93 -0.41 0.26 16 43 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.38 10.02 7.79 -40.82 -0.32 9.70 16 48 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 49 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 50 H 0.07 1.44 8.08 -51.93 -0.42 1.02 16 51 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 52 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 LS Contribution 413.65 15.07 6.23 6.23 Total: -1.00 -33.37 413.65 -11.67 -45.04 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -9.07 Total: 8.14 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -3.77 Total: -11.88 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: -0.13 Total: -54.63 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.37 -11.67 -45.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992737770.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.545 kcal (2) G-P(sol) polarization free energy of solvation -33.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds