Wall clock time and date at job start Wed Apr 1 2020 02:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38228 * 119.99983 * 2 1 4 4 C 1.38238 * 120.00110 * 180.21781 * 3 2 1 5 5 C 1.38234 * 119.99675 * 359.52133 * 4 3 2 6 6 C 1.50702 * 120.00257 * 180.25732 * 5 4 3 7 7 C 1.50701 * 109.46833 * 89.99861 * 6 5 4 8 8 O 1.21284 * 120.00031 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99985 * 180.02562 * 7 6 5 10 10 C 1.46938 * 125.40515 * 359.69915 * 9 7 6 11 11 C 1.54786 * 107.28928 * 181.45749 * 10 9 7 12 12 H 1.09004 * 111.45754 * 219.83356 * 11 10 9 13 13 C 1.52906 * 107.91346 * 97.49335 * 11 10 9 14 14 C 1.52846 * 109.68562 * 192.21475 * 13 11 10 15 15 C 1.52670 * 108.57788 * 65.12412 * 14 13 11 16 16 C 1.50449 * 111.09960 * 300.52638 * 15 14 13 17 17 H 1.09004 * 106.96840 * 284.66279 * 16 15 14 18 18 N 1.46498 * 108.91918 * 168.14769 * 16 15 14 19 19 C 1.36939 * 119.99687 * 77.88436 * 18 16 15 20 20 H 1.07994 * 120.00336 * 0.02562 * 19 18 16 21 21 C 1.38809 * 119.99598 * 180.02562 * 19 18 16 22 22 N 1.31621 * 120.00530 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99869 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46912 * 359.97438 * 23 21 19 25 25 H 1.48489 * 109.47264 * 119.99936 * 23 21 19 26 26 H 1.48503 * 109.47031 * 240.00348 * 23 21 19 27 27 C 1.49577 * 116.12394 * 45.64628 * 16 15 14 28 28 H 1.09007 * 107.25282 * 202.28496 * 27 16 15 29 29 C 1.47237 * 125.40416 * 180.02562 * 9 7 6 30 30 C 1.38235 * 120.00220 * 0.28720 * 5 4 3 31 31 C 1.38234 * 119.99892 * 179.78220 * 2 1 3 32 32 H 1.09001 * 109.46855 * 270.21410 * 1 2 3 33 33 H 1.08998 * 109.46931 * 30.21297 * 1 2 3 34 34 H 1.08992 * 109.46793 * 150.21689 * 1 2 3 35 35 H 1.08004 * 120.00281 * 0.02562 * 3 2 1 36 36 H 1.08002 * 120.00519 * 179.80752 * 4 3 2 37 37 H 1.08993 * 109.47429 * 210.00613 * 6 5 4 38 38 H 1.08998 * 109.46961 * 330.00864 * 6 5 4 39 39 H 1.09003 * 109.87873 * 301.00602 * 10 9 7 40 40 H 1.08996 * 109.88100 * 62.15870 * 10 9 7 41 41 H 1.08995 * 109.43596 * 312.27963 * 13 11 10 42 42 H 1.09007 * 109.43358 * 72.14643 * 13 11 10 43 43 H 1.08998 * 109.62237 * 184.85796 * 14 13 11 44 44 H 1.09008 * 109.61789 * 305.21669 * 14 13 11 45 45 H 1.08995 * 109.20363 * 60.30136 * 15 14 13 46 46 H 1.09005 * 109.20796 * 179.65628 * 15 14 13 47 47 H 0.96996 * 119.99976 * 257.88827 * 18 16 15 48 48 H 0.96994 * 119.99932 * 179.97438 * 22 21 19 49 49 H 1.08994 * 110.24338 * 317.52443 * 29 9 7 50 50 H 1.08995 * 110.24474 * 79.43324 * 29 9 7 51 51 H 1.07996 * 120.00471 * 179.97438 * 30 5 4 52 52 H 1.08001 * 120.00324 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 -0.0046 5 6 4.2717 0.0000 0.0009 6 6 5.7787 -0.0001 0.0018 7 6 6.2802 0.0059 1.4229 8 8 5.4914 0.0094 2.3443 9 7 7.6051 0.0074 1.6701 10 6 8.6616 -0.0027 0.6489 11 6 10.0192 -0.0342 1.3917 12 1 10.7547 0.6067 0.9056 13 6 10.4964 -1.4862 1.4379 14 6 11.6660 -1.6129 2.4137 15 6 11.1614 -1.3029 3.8208 16 6 10.5904 0.0869 3.8975 17 1 11.4338 0.7774 3.9050 18 7 9.8716 0.2358 5.1653 19 6 10.5672 0.4430 6.3265 20 1 11.6457 0.4970 6.3076 21 6 9.8862 0.5836 7.5278 22 7 8.5718 0.5173 7.5510 23 14 10.8351 0.8669 9.1118 24 1 12.2903 0.9001 8.8178 25 1 10.4211 2.1604 9.7122 26 1 10.5482 -0.2355 10.0646 27 6 9.6698 0.4829 2.7870 28 1 9.6619 1.5722 2.7466 29 6 8.2236 0.0125 3.0062 30 6 3.5806 -1.1972 0.0049 31 6 2.1982 -1.1971 0.0046 32 1 -0.3633 0.0038 1.0277 33 1 -0.3633 0.8881 -0.5171 34 1 -0.3632 -0.8919 -0.5104 35 1 1.6582 2.1325 0.0004 36 1 4.1206 2.1324 -0.0077 37 1 6.1424 -0.8921 -0.5081 38 1 6.1424 0.8878 -0.5154 39 1 8.5605 -0.8871 0.0197 40 1 8.5959 0.8981 0.0387 41 1 9.6782 -2.1265 1.7674 42 1 10.8188 -1.7938 0.4431 43 1 12.0609 -2.6284 2.3818 44 1 12.4498 -0.9068 2.1392 45 1 10.3801 -2.0151 4.0865 46 1 11.9868 -1.3964 4.5265 47 1 8.9029 0.1877 5.1822 48 1 8.0960 0.6152 8.3905 49 1 7.6972 0.7052 3.6628 50 1 8.2123 -0.9912 3.4309 51 1 4.1205 -2.1325 0.0087 52 1 1.6582 -2.1325 0.0077 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992737776.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:53 Heat of formation + Delta-G solvation = -11.286396 kcal Electronic energy + Delta-G solvation = -30041.777159 eV Core-core repulsion = 26198.322927 eV Total energy + Delta-G solvation = -3843.454232 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.57681 -39.59551 -38.29841 -35.53424 -33.98649 -33.85466 -31.66122 -31.00032 -30.98125 -29.68123 -28.70512 -26.84104 -25.72397 -24.08612 -23.45503 -22.80042 -21.69087 -21.01584 -20.84385 -19.18875 -18.30236 -17.28937 -16.71835 -16.31236 -16.07612 -15.59555 -15.24504 -14.98814 -14.80122 -14.65071 -13.95597 -13.88152 -13.77364 -13.56827 -13.49008 -13.33392 -12.97452 -12.81424 -12.76558 -12.55051 -12.48511 -12.04781 -11.91837 -11.85920 -11.79886 -11.26124 -11.22588 -11.02397 -10.99824 -10.95254 -10.82981 -10.76938 -10.25113 -10.12899 -9.88843 -9.69173 -9.62031 -9.52104 -8.95138 -8.85021 -8.55407 -8.40908 -6.93950 -5.72935 -3.03004 1.23812 1.37720 2.80282 3.12383 3.44942 3.49984 3.52813 3.72823 4.50375 4.53493 4.57880 4.66793 4.68054 4.80416 4.82378 4.93815 4.99090 4.99791 5.25462 5.29262 5.32693 5.36146 5.41947 5.42402 5.44068 5.45029 5.58993 5.63306 5.63836 5.67219 5.75654 5.78725 5.83852 5.95634 6.00832 6.00884 6.07556 6.13956 6.29424 6.32795 6.34500 6.41588 6.46808 6.51572 6.53496 6.55376 6.63470 6.75595 6.93998 6.95284 7.18317 7.69863 7.73154 8.35588 8.44790 9.55785 10.12257 10.46292 11.49305 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011901 B = 0.002664 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.176342 B =10506.340799 C =12313.827594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.090 4.090 3 C -0.120 4.120 4 C -0.101 4.101 5 C -0.069 4.069 6 C -0.097 4.097 7 C 0.523 3.477 8 O -0.526 6.526 9 N -0.617 5.617 10 C 0.103 3.897 11 C -0.087 4.087 12 H 0.091 0.909 13 C -0.110 4.110 14 C -0.116 4.116 15 C -0.131 4.131 16 C 0.191 3.809 17 H 0.039 0.961 18 N -0.729 5.729 19 C -0.239 4.239 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.930 5.930 23 Si 0.904 3.096 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.087 4.087 28 H 0.070 0.930 29 C 0.119 3.881 30 C -0.101 4.101 31 C -0.120 4.120 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.060 0.940 47 H 0.385 0.615 48 H 0.255 0.745 49 H 0.083 0.917 50 H 0.070 0.930 51 H 0.119 0.881 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.242 -2.393 -23.165 24.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.138 4.138 4 C -0.119 4.119 5 C -0.069 4.069 6 C -0.136 4.136 7 C 0.311 3.689 8 O -0.401 6.401 9 N -0.352 5.352 10 C -0.021 4.021 11 C -0.107 4.107 12 H 0.109 0.891 13 C -0.148 4.148 14 C -0.155 4.155 15 C -0.171 4.171 16 C 0.081 3.919 17 H 0.057 0.943 18 N -0.372 5.372 19 C -0.371 4.371 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.578 5.578 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.107 4.107 28 H 0.088 0.912 29 C -0.003 4.003 30 C -0.119 4.119 31 C -0.138 4.138 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.221 0.779 48 H 0.065 0.935 49 H 0.101 0.899 50 H 0.088 0.912 51 H 0.137 0.863 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.653 -2.329 -22.517 23.595 hybrid contribution 0.320 0.138 1.071 1.126 sum -6.333 -2.191 -21.446 22.469 Atomic orbital electron populations 1.20781 0.91374 1.02479 1.02362 1.19901 0.95968 0.93294 0.99889 1.20956 0.94045 0.97476 1.01301 1.20959 0.94251 0.97366 0.99283 1.19275 0.93627 0.93632 1.00395 1.20646 0.93122 1.04884 0.94987 1.20130 0.80686 0.76967 0.91101 1.90778 1.54102 1.48911 1.46323 1.48491 1.04735 1.73399 1.08621 1.22267 0.87433 1.01141 0.91210 1.21852 0.95209 0.97800 0.95802 0.89097 1.21555 0.98813 0.95308 0.99078 1.21428 0.97187 1.00679 0.96161 1.21692 1.00765 0.99908 0.94713 1.18785 0.93137 0.94433 0.85534 0.94310 1.42692 1.06160 1.86842 1.01534 1.19251 0.91034 1.41282 0.85492 0.91160 1.24753 0.95509 1.02910 0.97737 1.69675 1.05504 1.56911 1.25683 0.86159 0.78801 0.77370 0.84095 1.20611 1.21929 1.21932 1.21092 0.94499 1.01022 0.94086 0.91191 1.21928 0.92457 1.02380 0.83514 1.20950 0.94245 0.97349 0.99340 1.20953 0.94039 0.97465 1.01350 0.91166 0.91694 0.91701 0.86185 0.86248 0.88257 0.88233 0.91355 0.91761 0.91864 0.92345 0.92618 0.92319 0.92455 0.92102 0.77931 0.93512 0.89884 0.91213 0.86277 0.86200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.01 36.01 0.36 -0.54 16 2 C -0.09 -0.98 5.88 -104.62 -0.62 -1.59 16 3 C -0.12 -1.33 9.70 -39.59 -0.38 -1.72 16 4 C -0.10 -1.20 9.70 -39.58 -0.38 -1.59 16 5 C -0.07 -0.84 4.37 -104.62 -0.46 -1.30 16 6 C -0.10 -1.04 5.01 -29.03 -0.15 -1.19 16 7 C 0.52 8.11 7.83 -10.98 -0.09 8.02 16 8 O -0.53 -10.77 16.33 5.55 0.09 -10.68 16 9 N -0.62 -9.00 3.33 -171.24 -0.57 -9.57 16 10 C 0.10 1.08 5.96 -2.86 -0.02 1.06 16 11 C -0.09 -1.01 3.28 -89.80 -0.29 -1.30 16 12 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 13 C -0.11 -1.24 4.82 -26.86 -0.13 -1.37 16 14 C -0.12 -1.49 5.95 -26.98 -0.16 -1.65 16 15 C -0.13 -2.25 5.26 -28.17 -0.15 -2.39 16 16 C 0.19 3.62 2.50 -70.90 -0.18 3.45 16 17 H 0.04 0.76 8.05 -51.93 -0.42 0.35 16 18 N -0.73 -17.99 5.00 -56.34 -0.28 -18.27 16 19 C -0.24 -6.59 9.78 -15.06 -0.15 -6.74 16 20 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -28.59 13.06 55.49 0.72 -27.87 16 23 Si 0.90 22.60 29.55 -169.99 -5.02 17.58 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 26 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 27 C -0.09 -1.38 2.44 -92.05 -0.22 -1.61 16 28 H 0.07 1.15 8.13 -51.93 -0.42 0.73 16 29 C 0.12 2.12 4.74 -3.30 -0.02 2.10 16 30 C -0.10 -1.20 9.70 -39.58 -0.38 -1.58 16 31 C -0.12 -1.33 9.70 -39.58 -0.38 -1.71 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 34 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 35 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 36 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.10 0.84 8.08 -51.93 -0.42 0.42 16 38 H 0.10 0.85 8.09 -51.93 -0.42 0.43 16 39 H 0.07 0.59 7.72 -51.93 -0.40 0.19 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.80 8.00 -51.93 -0.42 0.39 16 42 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.39 10.22 5.67 -40.82 -0.23 9.99 16 48 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 49 H 0.08 1.77 7.54 -51.93 -0.39 1.37 16 50 H 0.07 1.36 8.05 -51.93 -0.42 0.95 16 51 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 52 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 409.73 15.07 6.17 6.17 Total: -1.00 -34.01 409.73 -11.77 -45.78 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -9.00 Total: 8.97 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -3.89 Total: -12.11 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -0.13 Total: -55.72 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.01 -11.77 -45.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992737776.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.494 kcal (2) G-P(sol) polarization free energy of solvation -34.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds