Wall clock time and date at job start Wed Apr 1 2020 02:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38235 * 119.99960 * 2 1 4 4 C 1.38234 * 120.00065 * 180.02562 * 3 2 1 5 5 C 1.38239 * 119.99971 * 359.96124 * 4 3 2 6 6 C 1.50696 * 119.99893 * 180.02562 * 5 4 3 7 7 C 1.50704 * 109.47494 * 89.99588 * 6 5 4 8 8 O 1.21286 * 119.99479 * 359.97438 * 7 6 5 9 9 N 1.34770 * 120.00322 * 179.97438 * 7 6 5 10 10 C 1.47756 * 125.82261 * 0.02562 * 9 7 6 11 11 C 1.55972 * 104.11877 * 205.93850 * 10 9 7 12 12 H 1.09000 * 112.98772 * 199.65656 * 11 10 9 13 13 C 1.52969 * 106.42207 * 74.84474 * 11 10 9 14 14 C 1.52637 * 110.86183 * 198.06957 * 13 11 10 15 15 C 1.53282 * 108.55632 * 62.14848 * 14 13 11 16 16 C 1.52838 * 108.30238 * 296.53232 * 15 14 13 17 17 H 1.08997 * 109.07704 * 179.76365 * 16 15 14 18 18 N 1.46499 * 109.07624 * 298.73294 * 16 15 14 19 19 C 1.36940 * 120.00396 * 276.96997 * 18 16 15 20 20 H 1.08003 * 119.99482 * 0.02562 * 19 18 16 21 21 C 1.38814 * 120.00464 * 180.02562 * 19 18 16 22 22 N 1.31619 * 119.99463 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00324 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46863 * 0.02562 * 23 21 19 25 25 H 1.48493 * 109.46905 * 120.00216 * 23 21 19 26 26 H 1.48494 * 109.46918 * 240.00428 * 23 21 19 27 27 C 1.51022 * 111.47469 * 59.24878 * 16 15 14 28 28 H 1.09002 * 108.91595 * 185.34530 * 27 16 15 29 29 C 1.47608 * 125.82183 * 179.97438 * 9 7 6 30 30 C 1.38233 * 119.99818 * 0.26673 * 5 4 3 31 31 C 1.38233 * 120.00050 * 180.02562 * 2 1 3 32 32 H 1.08997 * 109.46484 * 90.00254 * 1 2 3 33 33 H 1.08998 * 109.47143 * 209.99967 * 1 2 3 34 34 H 1.08993 * 109.47108 * 330.00407 * 1 2 3 35 35 H 1.07995 * 120.00162 * 359.97438 * 3 2 1 36 36 H 1.08000 * 120.00511 * 179.97438 * 4 3 2 37 37 H 1.08998 * 109.47349 * 329.99615 * 6 5 4 38 38 H 1.09002 * 109.47258 * 209.99213 * 6 5 4 39 39 H 1.08997 * 110.49766 * 324.59041 * 10 9 7 40 40 H 1.08993 * 110.50349 * 87.27608 * 10 9 7 41 41 H 1.09004 * 109.20436 * 318.43090 * 13 11 10 42 42 H 1.09002 * 109.19825 * 77.71436 * 13 11 10 43 43 H 1.09002 * 109.62561 * 181.86337 * 14 13 11 44 44 H 1.08998 * 109.62631 * 302.23688 * 14 13 11 45 45 H 1.08996 * 109.69747 * 56.23357 * 15 14 13 46 46 H 1.08996 * 109.69543 * 176.79109 * 15 14 13 47 47 H 0.97003 * 120.00022 * 96.97095 * 18 16 15 48 48 H 0.97004 * 119.99709 * 179.97438 * 22 21 19 49 49 H 1.09005 * 110.07872 * 60.22822 * 29 9 7 50 50 H 1.08996 * 110.13128 * 298.69822 * 29 9 7 51 51 H 1.08006 * 119.99727 * 179.73034 * 30 5 4 52 52 H 1.08000 * 119.99957 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 0.0000 -0.0003 6 6 5.7787 0.0000 -0.0003 7 6 6.2811 0.0005 1.4206 8 8 5.4930 0.0012 2.3424 9 7 7.6061 0.0001 1.6668 10 6 8.6753 -0.0003 0.6469 11 6 9.8893 -0.6622 1.3686 12 1 10.8426 -0.4387 0.8898 13 6 9.5868 -2.1601 1.4381 14 6 10.4585 -2.8425 2.4889 15 6 10.1296 -2.2420 3.8603 16 6 10.5066 -0.7610 3.8386 17 1 10.2737 -0.3199 4.8078 18 7 11.9451 -0.6366 3.5909 19 6 12.8314 -0.7564 4.6279 20 1 12.4698 -0.9430 5.6284 21 6 14.1944 -0.6380 4.3933 22 7 14.6349 -0.4101 3.1741 23 14 15.4034 -0.8021 5.8078 24 1 14.6595 -1.0552 7.0679 25 1 16.3255 -1.9353 5.5418 26 1 16.1862 0.4530 5.9380 27 6 9.7540 -0.0146 2.7628 28 1 10.1218 1.0106 2.7208 29 6 8.2368 0.0010 3.0014 30 6 3.5806 -1.1971 -0.0050 31 6 2.1982 -1.1971 -0.0005 32 1 -0.3632 0.0000 -1.0277 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3633 0.8900 0.5137 35 1 1.6582 2.1324 -0.0004 36 1 4.1206 2.1324 -0.0010 37 1 6.1420 0.8899 -0.5143 38 1 6.1421 -0.8901 -0.5138 39 1 8.3769 -0.5917 -0.2186 40 1 8.9183 1.0194 0.3483 41 1 8.5372 -2.3024 1.6957 42 1 9.7802 -2.6104 0.4645 43 1 10.2505 -3.9124 2.4985 44 1 11.5103 -2.6763 2.2561 45 1 9.0635 -2.3468 4.0611 46 1 10.7013 -2.7559 4.6330 47 1 12.2698 -0.4694 2.6923 48 1 15.5874 -0.3270 3.0102 49 1 7.9367 -0.8871 3.5577 50 1 7.9532 0.8993 3.5497 51 1 4.1206 -2.1324 -0.0092 52 1 1.6582 -2.1324 -0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992737786.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:01 Heat of formation + Delta-G solvation = -10.203119 kcal Electronic energy + Delta-G solvation = -29987.562629 eV Core-core repulsion = 26144.155371 eV Total energy + Delta-G solvation = -3843.407258 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.68256 -39.67472 -38.35834 -35.53801 -33.97743 -33.33239 -31.51820 -31.08202 -30.89475 -29.79682 -29.11848 -26.56770 -25.73661 -24.37581 -22.89914 -22.87291 -21.84723 -21.12549 -20.96319 -19.21983 -18.05209 -17.24733 -16.91465 -16.37160 -16.17525 -15.62914 -15.34361 -15.09805 -14.83192 -14.52622 -14.03103 -13.92109 -13.87681 -13.60824 -13.56673 -13.39145 -12.99237 -12.89007 -12.65126 -12.62016 -12.40291 -12.01864 -11.99698 -11.65442 -11.63800 -11.33725 -11.31014 -11.19024 -11.11407 -10.97211 -10.87344 -10.74204 -10.15155 -10.11211 -9.85533 -9.74209 -9.58472 -9.47599 -9.05448 -8.87109 -8.65789 -8.54715 -6.96366 -5.78747 -3.06342 1.13689 1.27501 2.65587 2.98192 3.41912 3.48538 3.49933 3.62305 4.44661 4.50504 4.57753 4.59682 4.62316 4.72738 4.84060 4.88182 4.96826 5.01465 5.22042 5.23789 5.31512 5.32387 5.32937 5.42017 5.45069 5.53803 5.55437 5.56464 5.63985 5.74960 5.75820 5.82489 5.90806 5.91701 5.92814 5.98754 6.09599 6.17738 6.22517 6.24909 6.32363 6.39937 6.41744 6.43656 6.46075 6.53902 6.81616 6.85108 6.86404 7.02939 7.10343 7.56473 7.70466 8.19470 8.40253 9.52098 10.08852 10.44422 11.43997 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.031798 B = 0.002033 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.338566 B =13766.309400 C =13803.710066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.091 4.091 3 C -0.120 4.120 4 C -0.101 4.101 5 C -0.068 4.068 6 C -0.098 4.098 7 C 0.527 3.473 8 O -0.537 6.537 9 N -0.615 5.615 10 C 0.096 3.904 11 C -0.087 4.087 12 H 0.104 0.896 13 C -0.107 4.107 14 C -0.111 4.111 15 C -0.134 4.134 16 C 0.188 3.812 17 H 0.046 0.954 18 N -0.719 5.719 19 C -0.234 4.234 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.904 3.096 24 H -0.281 1.281 25 H -0.293 1.293 26 H -0.293 1.293 27 C -0.096 4.096 28 H 0.080 0.920 29 C 0.117 3.883 30 C -0.101 4.101 31 C -0.120 4.120 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.045 0.955 44 H 0.079 0.921 45 H 0.043 0.957 46 H 0.062 0.938 47 H 0.384 0.616 48 H 0.254 0.746 49 H 0.072 0.928 50 H 0.065 0.935 51 H 0.120 0.880 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.864 0.273 -11.455 25.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.138 4.138 4 C -0.119 4.119 5 C -0.069 4.069 6 C -0.138 4.138 7 C 0.316 3.684 8 O -0.414 6.414 9 N -0.350 5.350 10 C -0.027 4.027 11 C -0.106 4.106 12 H 0.122 0.878 13 C -0.144 4.144 14 C -0.149 4.149 15 C -0.174 4.174 16 C 0.078 3.922 17 H 0.064 0.936 18 N -0.360 5.360 19 C -0.365 4.365 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.582 5.582 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.220 1.220 27 C -0.116 4.116 28 H 0.098 0.902 29 C -0.006 4.006 30 C -0.119 4.119 31 C -0.138 4.138 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.098 0.902 45 H 0.062 0.938 46 H 0.081 0.919 47 H 0.218 0.782 48 H 0.063 0.937 49 H 0.090 0.910 50 H 0.083 0.917 51 H 0.138 0.862 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -23.294 0.275 -10.795 25.675 hybrid contribution 1.043 -0.029 0.469 1.143 sum -22.251 0.246 -10.327 24.532 Atomic orbital electron populations 1.20779 0.91356 1.02744 1.02124 1.19906 0.95977 0.93284 0.99895 1.20957 0.94034 0.97472 1.01340 1.20956 0.94234 0.97359 0.99365 1.19276 0.93613 0.93617 1.00353 1.20654 0.93068 1.05124 0.94941 1.20126 0.80561 0.76621 0.91118 1.90727 1.54359 1.49875 1.46406 1.48737 1.04728 1.72858 1.08668 1.22817 0.87783 1.00768 0.91322 1.22435 0.97246 0.95353 0.95581 0.87812 1.21449 0.99760 0.94095 0.99121 1.21370 1.01185 0.97502 0.94842 1.22175 0.98613 0.99405 0.97241 1.19584 0.85573 0.92212 0.94879 0.93609 1.42382 0.98790 1.86108 1.08763 1.19278 0.87335 1.40626 0.89274 0.91197 1.24698 0.96876 1.02976 0.96401 1.69659 1.13356 1.56470 1.18709 0.86157 0.81517 0.77169 0.81602 1.20620 1.21990 1.21981 1.21798 0.92809 1.01054 0.95917 0.90200 1.21978 0.92423 1.02011 0.84176 1.20964 0.94240 0.97374 0.99316 1.20962 0.94038 0.97480 1.01296 0.91312 0.91614 0.91625 0.86198 0.86271 0.88110 0.88082 0.90683 0.91236 0.92606 0.92770 0.93605 0.90226 0.93826 0.91928 0.78237 0.93654 0.90982 0.91689 0.86244 0.86183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.01 36.01 0.36 -0.40 16 2 C -0.09 -0.86 5.88 -104.62 -0.62 -1.48 16 3 C -0.12 -1.17 9.70 -39.58 -0.38 -1.56 16 4 C -0.10 -1.07 9.70 -39.58 -0.38 -1.45 16 5 C -0.07 -0.75 4.37 -104.63 -0.46 -1.21 16 6 C -0.10 -0.96 4.84 -29.04 -0.14 -1.10 16 7 C 0.53 7.14 7.85 -10.99 -0.09 7.06 16 8 O -0.54 -9.44 16.37 5.55 0.09 -9.35 16 9 N -0.62 -7.93 2.78 -169.56 -0.47 -8.40 16 10 C 0.10 1.03 5.99 -1.76 -0.01 1.02 16 11 C -0.09 -1.17 3.36 -88.35 -0.30 -1.46 16 12 H 0.10 1.47 7.87 -51.93 -0.41 1.06 16 13 C -0.11 -1.44 4.82 -26.93 -0.13 -1.57 16 14 C -0.11 -1.80 5.83 -26.77 -0.16 -1.96 16 15 C -0.13 -2.32 5.44 -26.67 -0.15 -2.47 16 16 C 0.19 3.49 2.52 -69.01 -0.17 3.31 16 17 H 0.05 0.90 8.07 -51.93 -0.42 0.48 16 18 N -0.72 -16.63 4.18 -54.48 -0.23 -16.85 16 19 C -0.23 -6.20 9.89 -15.06 -0.15 -6.34 16 20 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -27.09 13.06 55.49 0.72 -26.37 16 23 Si 0.90 21.98 29.55 -169.99 -5.02 16.96 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 C -0.10 -1.47 2.31 -90.61 -0.21 -1.68 16 28 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 29 C 0.12 1.69 5.77 -3.13 -0.02 1.67 16 30 C -0.10 -1.07 9.70 -39.58 -0.38 -1.46 16 31 C -0.12 -1.18 9.70 -39.58 -0.38 -1.56 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 34 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 35 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 36 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 37 H 0.10 0.79 8.09 -51.93 -0.42 0.37 16 38 H 0.10 0.80 7.79 -51.93 -0.40 0.39 16 39 H 0.07 0.65 7.33 -51.93 -0.38 0.27 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.76 7.01 -51.93 -0.36 0.39 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.08 1.53 7.44 -51.93 -0.39 1.14 16 45 H 0.04 0.69 6.61 -51.93 -0.34 0.35 16 46 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 47 H 0.38 9.34 7.17 -40.82 -0.29 9.05 16 48 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 49 H 0.07 1.11 6.34 -51.93 -0.33 0.78 16 50 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 51 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 52 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 405.72 15.07 6.11 6.11 Total: -1.00 -31.62 405.72 -11.44 -43.06 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -8.79 Total: 7.95 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -3.86 Total: -13.12 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: 0.03 Total: -51.62 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.09 Total: -9.35 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.62 -11.44 -43.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992737786.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.857 kcal (2) G-P(sol) polarization free energy of solvation -31.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds