Wall clock time and date at job start Wed Apr 1 2020 02:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38255 * 119.99977 * 2 1 4 4 C 1.38216 * 120.00388 * 180.02562 * 3 2 1 5 5 C 1.38261 * 119.99716 * 359.95432 * 4 3 2 6 6 C 1.38216 * 119.99906 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.99802 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47295 * 89.99954 * 7 6 5 9 9 O 1.21286 * 119.99910 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00156 * 179.97438 * 8 7 6 11 11 C 1.48656 * 125.78517 * 359.97438 * 10 8 7 12 12 C 1.53051 * 103.44775 * 155.61802 * 11 10 8 13 13 H 1.09004 * 110.56050 * 284.33998 * 12 11 10 14 14 C 1.51618 * 117.49776 * 156.24455 * 12 11 10 15 15 C 1.53812 * 107.02720 * 183.32041 * 14 12 11 16 16 C 1.51982 * 111.08449 * 58.95669 * 15 14 12 17 17 C 1.53837 * 111.04458 * 304.01561 * 16 15 14 18 18 H 1.09006 * 110.00822 * 299.20068 * 17 16 15 19 19 N 1.46498 * 109.94205 * 178.00364 * 17 16 15 20 20 C 1.36943 * 119.99752 * 87.12350 * 19 17 16 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 17 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 17 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47294 * 90.00155 * 24 22 20 26 26 H 1.48499 * 109.47218 * 210.00015 * 24 22 20 27 27 H 1.48496 * 109.47166 * 329.99846 * 24 22 20 28 28 C 1.51444 * 107.04252 * 58.62139 * 17 16 15 29 29 H 1.08998 * 109.86946 * 54.18945 * 28 17 16 30 30 C 1.48238 * 125.78260 * 179.97438 * 10 8 7 31 31 C 1.38214 * 120.00252 * 180.22290 * 2 1 3 32 32 H 1.09004 * 109.46834 * 90.00655 * 1 2 3 33 33 H 1.09000 * 109.46999 * 210.00049 * 1 2 3 34 34 H 1.08993 * 109.47668 * 330.00675 * 1 2 3 35 35 H 1.08004 * 119.99739 * 359.97438 * 3 2 1 36 36 H 1.07996 * 120.00425 * 179.97438 * 4 3 2 37 37 H 1.07992 * 119.99923 * 180.02562 * 5 4 3 38 38 H 1.08996 * 109.47299 * 330.00034 * 7 6 5 39 39 H 1.09000 * 109.46689 * 209.99819 * 7 6 5 40 40 H 1.08999 * 110.62636 * 37.12482 * 11 10 8 41 41 H 1.09004 * 110.62178 * 274.11115 * 11 10 8 42 42 H 1.09002 * 109.94122 * 302.69707 * 14 12 11 43 43 H 1.09004 * 109.94378 * 63.85359 * 14 12 11 44 44 H 1.08996 * 109.03773 * 178.11586 * 15 14 12 45 45 H 1.09006 * 109.03109 * 297.04361 * 15 14 12 46 46 H 1.08994 * 108.20504 * 184.36972 * 16 15 14 47 47 H 1.09006 * 110.49369 * 65.14984 * 16 15 14 48 48 H 0.97001 * 120.00384 * 267.40706 * 19 17 16 49 49 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 50 50 H 1.09001 * 110.17380 * 57.71903 * 30 10 8 51 51 H 1.08999 * 110.17305 * 295.91198 * 30 10 8 52 52 H 1.08002 * 119.99803 * 0.02860 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0001 6 6 3.5807 -1.1969 0.0003 7 6 4.3342 -2.5020 0.0002 8 6 4.5860 -2.9368 1.4209 9 8 4.1918 -2.2544 2.3429 10 7 5.2482 -4.0846 1.6671 11 6 5.7843 -5.0162 0.6402 12 6 6.9138 -5.7431 1.3741 13 1 7.7862 -5.0967 1.4701 14 6 7.3195 -7.1092 0.8566 15 6 8.3999 -7.6491 1.8090 16 6 7.8754 -7.7456 3.2322 17 6 7.3422 -6.3868 3.7178 18 1 8.1427 -5.6469 3.7080 19 7 6.8002 -6.5179 5.0725 20 6 7.6256 -6.3805 6.1565 21 1 8.6753 -6.1709 6.0128 22 6 7.1131 -6.5105 7.4400 23 7 5.8339 -6.7664 7.6150 24 14 8.2388 -6.3222 8.9187 25 1 8.2667 -4.8990 9.3417 26 1 7.7336 -7.1607 10.0354 27 1 9.6111 -6.7574 8.5546 28 6 6.2445 -5.9727 2.7602 29 1 5.4994 -6.7648 2.6859 30 6 5.5654 -4.6319 3.0077 31 6 2.1981 -1.1969 -0.0047 32 1 -0.3633 -0.0001 -1.0277 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3634 0.8900 0.5137 35 1 1.6582 2.1326 -0.0004 36 1 4.1204 2.1327 -0.0010 37 1 5.3517 0.0001 -0.0001 38 1 5.2864 -2.3717 -0.5140 39 1 3.7449 -3.2617 -0.5133 40 1 6.1750 -4.4629 -0.2137 41 1 5.0160 -5.7215 0.3232 42 1 6.4580 -7.7771 0.8549 43 1 7.7223 -7.0200 -0.1524 44 1 8.6923 -8.6479 1.4853 45 1 9.2698 -6.9935 1.7678 46 1 8.6969 -8.0566 3.8775 47 1 7.0763 -8.4843 3.2951 48 1 5.8574 -6.7063 5.2016 49 1 5.4757 -6.8568 8.5119 50 1 4.6498 -4.7746 3.5817 51 1 6.2411 -3.9605 3.5376 52 1 1.6581 -2.1323 -0.0088 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992801081.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:05 Heat of formation + Delta-G solvation = -12.447325 kcal Electronic energy + Delta-G solvation = -29792.500024 eV Core-core repulsion = 25948.995450 eV Total energy + Delta-G solvation = -3843.504574 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.49340 -39.61122 -38.32692 -35.52031 -33.98325 -33.62560 -32.18111 -31.50741 -30.61361 -29.05634 -27.87905 -26.97446 -26.66383 -24.58110 -23.25378 -22.27467 -21.25141 -20.67643 -20.38795 -19.73792 -19.02065 -17.22907 -16.72410 -16.63598 -16.07111 -15.71050 -15.16281 -14.98769 -14.74660 -14.23954 -14.18184 -14.12146 -13.88639 -13.58673 -13.31087 -13.11501 -13.04286 -12.85003 -12.67022 -12.58085 -12.36483 -12.15868 -11.99579 -11.92225 -11.76775 -11.43559 -11.19384 -11.09841 -10.98819 -10.88490 -10.80065 -10.53155 -10.28925 -10.19246 -10.15618 -9.78712 -9.73945 -9.45236 -8.88296 -8.86378 -8.67874 -8.48774 -6.95357 -5.75238 -3.04256 1.22921 1.31314 2.76690 3.03002 3.44888 3.49878 3.51440 3.68106 4.39179 4.48843 4.59297 4.61521 4.65655 4.77022 4.81530 4.98784 5.01980 5.08609 5.15654 5.25106 5.31510 5.36099 5.37363 5.39099 5.41329 5.49962 5.54590 5.57216 5.60329 5.65285 5.71912 5.81420 5.87188 5.93528 5.94774 6.01146 6.06420 6.08478 6.16554 6.28021 6.35123 6.40721 6.42128 6.45651 6.50338 6.53043 6.59640 6.63986 6.86683 6.91704 7.08441 7.64925 7.71215 8.30866 8.42833 9.54315 10.10835 10.45347 11.47217 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011717 B = 0.002558 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.041886 B =10943.093860 C =12533.338777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.087 4.087 3 C -0.123 4.123 4 C -0.116 4.116 5 C -0.110 4.110 6 C -0.059 4.059 7 C -0.098 4.098 8 C 0.525 3.475 9 O -0.530 6.530 10 N -0.624 5.624 11 C 0.110 3.890 12 C -0.107 4.107 13 H 0.084 0.916 14 C -0.100 4.100 15 C -0.114 4.114 16 C -0.139 4.139 17 C 0.195 3.805 18 H 0.051 0.949 19 N -0.722 5.722 20 C -0.239 4.239 21 H 0.070 0.930 22 C -0.012 4.012 23 N -0.931 5.931 24 Si 0.905 3.095 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 C -0.102 4.102 29 H 0.077 0.923 30 C 0.127 3.873 31 C -0.105 4.105 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.053 0.947 45 H 0.058 0.942 46 H 0.060 0.940 47 H 0.057 0.943 48 H 0.384 0.616 49 H 0.255 0.745 50 H 0.072 0.928 51 H 0.073 0.927 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.174 7.978 -23.485 25.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.087 4.087 3 C -0.141 4.141 4 C -0.134 4.134 5 C -0.129 4.129 6 C -0.060 4.060 7 C -0.137 4.137 8 C 0.313 3.687 9 O -0.406 6.406 10 N -0.359 5.359 11 C -0.013 4.013 12 C -0.127 4.127 13 H 0.102 0.898 14 C -0.138 4.138 15 C -0.152 4.152 16 C -0.179 4.179 17 C 0.084 3.916 18 H 0.069 0.931 19 N -0.362 5.362 20 C -0.370 4.370 21 H 0.088 0.912 22 C -0.208 4.208 23 N -0.579 5.579 24 Si 0.736 3.264 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.122 4.122 29 H 0.096 0.904 30 C 0.005 3.995 31 C -0.123 4.123 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.218 0.782 49 H 0.065 0.935 50 H 0.090 0.910 51 H 0.091 0.909 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.311 8.456 -22.829 24.723 hybrid contribution 0.386 -0.138 1.028 1.106 sum -3.925 8.318 -21.801 23.662 Atomic orbital electron populations 1.20782 0.91266 1.02896 1.02083 1.19860 0.96007 0.93110 0.99761 1.20997 0.94286 0.97376 1.01456 1.21066 0.94303 0.97833 1.00183 1.20955 0.99678 0.92010 1.00212 1.19278 0.93532 0.93667 0.99515 1.20659 1.01949 0.96048 0.95075 1.20110 0.77817 0.79738 0.91036 1.90760 1.50523 1.53008 1.46325 1.49272 1.56220 1.21753 1.08655 1.22075 0.95974 0.92154 0.91111 1.22087 0.97489 0.97026 0.96101 0.89770 1.21311 0.99369 0.94802 0.98310 1.21456 0.97673 1.00215 0.95865 1.22232 1.00987 1.00629 0.94086 1.19974 0.92874 0.93903 0.84832 0.93126 1.42403 1.09275 1.85417 0.99119 1.19209 0.91808 1.40793 0.85209 0.91247 1.24731 0.95999 1.02669 0.97412 1.69657 1.11545 1.55603 1.21139 0.86229 0.79701 0.77512 0.82979 1.21722 1.21829 1.20822 1.22169 0.98330 0.96157 0.95579 0.90435 1.21579 1.00414 0.94557 0.82915 1.20845 0.93358 0.97625 1.00477 0.91318 0.91495 0.91588 0.86306 0.86121 0.86318 0.88173 0.88195 0.90797 0.91169 0.91644 0.92165 0.92828 0.92344 0.92170 0.92439 0.78231 0.93518 0.91006 0.90902 0.86323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.01 36.00 0.36 -0.56 16 2 C -0.09 -0.94 5.88 -104.63 -0.62 -1.56 16 3 C -0.12 -1.27 9.70 -39.58 -0.38 -1.66 16 4 C -0.12 -1.23 10.05 -39.58 -0.40 -1.62 16 5 C -0.11 -1.27 9.70 -39.58 -0.38 -1.65 16 6 C -0.06 -0.71 4.37 -104.62 -0.46 -1.17 16 7 C -0.10 -1.02 4.86 -29.04 -0.14 -1.16 16 8 C 0.53 7.87 7.86 -10.98 -0.09 7.78 16 9 O -0.53 -10.49 16.38 5.55 0.09 -10.40 16 10 N -0.62 -8.81 3.38 -170.87 -0.58 -9.39 16 11 C 0.11 1.12 6.38 -2.82 -0.02 1.10 16 12 C -0.11 -1.25 2.46 -89.90 -0.22 -1.47 16 13 H 0.08 1.03 8.03 -51.93 -0.42 0.61 16 14 C -0.10 -1.03 5.72 -27.01 -0.15 -1.18 16 15 C -0.11 -1.39 5.81 -26.83 -0.16 -1.55 16 16 C -0.14 -2.28 5.44 -26.81 -0.15 -2.42 16 17 C 0.19 3.63 2.50 -68.28 -0.17 3.46 16 18 H 0.05 0.99 7.99 -51.93 -0.41 0.57 16 19 N -0.72 -17.48 5.05 -53.76 -0.27 -17.76 16 20 C -0.24 -6.52 9.95 -15.06 -0.15 -6.67 16 21 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 22 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 23 N -0.93 -28.16 13.06 55.49 0.72 -27.44 16 24 Si 0.90 22.53 29.55 -169.99 -5.02 17.50 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 27 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 28 C -0.10 -1.58 1.83 -90.35 -0.17 -1.75 16 29 H 0.08 1.21 7.94 -51.93 -0.41 0.80 16 30 C 0.13 2.17 6.51 -3.43 -0.02 2.15 16 31 C -0.10 -1.22 9.36 -39.58 -0.37 -1.59 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 34 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 35 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 36 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 38 H 0.10 0.81 7.82 -51.93 -0.41 0.41 16 39 H 0.10 0.82 8.08 -51.93 -0.42 0.40 16 40 H 0.07 0.57 7.55 -51.93 -0.39 0.18 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.67 7.99 -51.93 -0.41 0.26 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 47 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.38 10.01 7.81 -40.82 -0.32 9.69 16 49 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 50 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 51 H 0.07 1.42 8.08 -51.93 -0.42 1.00 16 52 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 413.61 15.07 6.23 6.23 Total: -1.00 -33.36 413.61 -11.67 -45.03 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -9.07 Total: 8.18 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -3.78 Total: -11.96 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.12 Total: -54.58 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.36 -11.67 -45.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992801081.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.583 kcal (2) G-P(sol) polarization free energy of solvation -33.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds