Wall clock time and date at job start Wed Apr 1 2020 02:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38260 * 120.00132 * 2 1 4 4 C 1.38211 * 119.99735 * 179.97438 * 3 2 1 5 5 C 1.38260 * 120.00421 * 359.70712 * 4 3 2 6 6 C 1.38212 * 119.99392 * 0.54704 * 5 4 3 7 7 C 1.50701 * 119.99776 * 179.74146 * 6 5 4 8 8 C 1.50699 * 109.47537 * 269.73241 * 7 6 5 9 9 O 1.21279 * 119.99661 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00259 * 180.02562 * 8 7 6 11 11 C 1.47627 * 125.72433 * 0.03312 * 10 8 7 12 12 C 1.55848 * 104.47023 * 204.83677 * 11 10 8 13 13 H 1.08996 * 113.43121 * 201.17038 * 12 11 10 14 14 C 1.52987 * 106.36885 * 77.06103 * 12 11 10 15 15 C 1.52621 * 110.93007 * 198.10881 * 14 12 11 16 16 C 1.53294 * 108.50854 * 62.20479 * 15 14 12 17 17 C 1.52840 * 108.25498 * 296.18912 * 16 15 14 18 18 H 1.08996 * 109.06253 * 298.53924 * 17 16 15 19 19 N 1.46498 * 109.06125 * 179.60883 * 17 16 15 20 20 C 1.36936 * 119.99832 * 85.00405 * 19 17 16 21 21 H 1.08004 * 119.99907 * 359.97438 * 20 19 17 22 22 C 1.38813 * 120.00416 * 179.97438 * 20 19 17 23 23 N 1.31625 * 119.99566 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00285 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46792 * 60.00640 * 24 22 20 26 26 H 1.48504 * 109.46983 * 180.02562 * 24 22 20 27 27 H 1.48492 * 109.47443 * 300.00174 * 24 22 20 28 28 C 1.50986 * 111.51762 * 59.02993 * 17 16 15 29 29 H 1.09004 * 108.30660 * 186.72253 * 28 17 16 30 30 C 1.47428 * 125.72716 * 180.02562 * 10 8 7 31 31 C 1.38210 * 119.99959 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.47004 * 270.02168 * 1 2 3 33 33 H 1.09001 * 109.46795 * 30.01721 * 1 2 3 34 34 H 1.09000 * 109.47349 * 150.01471 * 1 2 3 35 35 H 1.07992 * 119.99830 * 359.97438 * 3 2 1 36 36 H 1.08007 * 119.99902 * 179.97438 * 4 3 2 37 37 H 1.08003 * 120.00315 * 180.29760 * 5 4 3 38 38 H 1.09001 * 109.47113 * 149.73145 * 7 6 5 39 39 H 1.09005 * 109.47145 * 29.73294 * 7 6 5 40 40 H 1.08999 * 110.43047 * 86.09100 * 11 10 8 41 41 H 1.08995 * 110.43725 * 323.58591 * 11 10 8 42 42 H 1.08994 * 109.18240 * 77.73326 * 14 12 11 43 43 H 1.08999 * 109.14521 * 318.45701 * 14 12 11 44 44 H 1.09001 * 109.62484 * 302.49905 * 15 14 12 45 45 H 1.09003 * 109.63086 * 181.91675 * 15 14 12 46 46 H 1.09002 * 109.71359 * 55.89349 * 16 15 14 47 47 H 1.09001 * 109.71251 * 176.48961 * 16 15 14 48 48 H 0.96994 * 120.00709 * 264.99792 * 19 17 16 49 49 H 0.96997 * 119.99857 * 180.02562 * 23 22 20 50 50 H 1.08994 * 110.05059 * 60.09568 * 30 10 8 51 51 H 1.09003 * 110.04726 * 298.61936 * 30 10 8 52 52 H 1.08000 * 119.99966 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0001 0.0072 6 6 3.5806 -1.1970 0.0019 7 6 4.3341 -2.5021 0.0032 8 6 4.5863 -2.9382 -1.4171 9 8 4.1925 -2.2565 -2.3396 10 7 5.2484 -4.0861 -1.6621 11 6 5.7798 -5.0097 -0.6403 12 6 6.9434 -5.7573 -1.3585 13 1 7.2026 -6.7070 -0.8906 14 6 8.1230 -4.7839 -1.3963 15 6 9.1500 -5.2121 -2.4409 16 6 8.4832 -5.1793 -3.8208 17 6 7.3602 -6.2160 -3.8346 18 1 7.7867 -7.2052 -3.6688 19 7 6.7039 -6.1930 -5.1442 20 6 7.2195 -6.9236 -6.1813 21 1 8.1102 -7.5164 -6.0338 22 6 6.5975 -6.9023 -7.4220 23 7 5.5117 -6.1803 -7.6015 24 14 7.3013 -7.8984 -8.8369 25 1 7.3186 -9.3370 -8.4690 26 1 6.4591 -7.7060 -10.0448 27 1 8.6858 -7.4436 -9.1220 28 6 6.3346 -5.9356 -2.7625 29 1 5.6280 -6.7653 -2.7393 30 6 5.5636 -4.6303 -2.9955 31 6 2.1980 -1.1969 0.0005 32 1 -0.3633 0.0004 1.0277 33 1 -0.3633 0.8899 -0.5141 34 1 -0.3634 -0.8901 -0.5136 35 1 1.6583 2.1326 -0.0004 36 1 4.1205 2.1326 0.0001 37 1 5.3517 -0.0001 0.0125 38 1 3.7446 -3.2614 0.5172 39 1 5.2862 -2.3715 0.5177 40 1 5.0098 -5.7150 -0.3277 41 1 6.1573 -4.4524 0.2170 42 1 8.5983 -4.7591 -0.4157 43 1 7.7564 -3.7873 -1.6419 44 1 9.4931 -6.2237 -2.2238 45 1 9.9957 -4.5245 -2.4263 46 1 8.0706 -4.1877 -4.0064 47 1 9.2169 -5.4220 -4.5896 48 1 5.9042 -5.6604 -5.2767 49 1 5.0768 -6.1657 -8.4684 50 1 6.1819 -3.9249 -3.5504 51 1 4.6434 -4.8329 -3.5435 52 1 1.6580 -2.1322 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992801083.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:09 Heat of formation + Delta-G solvation = -11.894716 kcal Electronic energy + Delta-G solvation = -30171.971217 eV Core-core repulsion = 26328.490606 eV Total energy + Delta-G solvation = -3843.480611 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.63549 -39.62195 -38.25771 -35.40767 -33.79457 -33.62034 -32.16811 -31.55638 -30.66369 -29.06933 -27.93173 -26.97674 -26.45141 -24.44205 -23.41006 -22.26744 -21.67597 -21.02861 -20.71294 -19.09866 -18.44468 -17.28780 -16.69949 -16.59729 -16.14853 -15.65212 -15.32087 -15.02091 -14.77070 -14.48891 -13.99911 -13.83489 -13.76748 -13.61157 -13.43059 -13.21449 -13.00746 -12.92079 -12.74259 -12.48884 -12.41627 -12.05578 -11.95006 -11.84975 -11.64540 -11.34531 -11.18214 -11.09507 -11.06919 -10.97940 -10.84813 -10.73866 -10.24837 -10.15005 -9.94986 -9.74372 -9.66678 -9.51331 -8.86627 -8.84567 -8.67403 -8.44239 -6.94391 -5.73787 -3.03354 1.23438 1.31980 2.76426 3.07594 3.45003 3.49408 3.50823 3.69554 4.47759 4.49676 4.53971 4.62749 4.65661 4.77530 4.84588 4.97230 4.99830 5.09310 5.16245 5.27787 5.32848 5.36416 5.37373 5.41687 5.44271 5.46711 5.55196 5.59410 5.65296 5.66752 5.73210 5.77178 5.86078 5.94030 5.95494 6.01843 6.06309 6.12770 6.25741 6.35424 6.36446 6.37846 6.44664 6.46749 6.50460 6.50945 6.60200 6.74623 6.92268 6.93462 7.13258 7.66405 7.71156 8.31371 8.44142 9.55080 10.12121 10.46405 11.48508 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013639 B = 0.002569 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.501118 B =10897.134502 C =12141.098700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.087 4.087 3 C -0.123 4.123 4 C -0.116 4.116 5 C -0.111 4.111 6 C -0.059 4.059 7 C -0.097 4.097 8 C 0.525 3.475 9 O -0.528 6.528 10 N -0.617 5.617 11 C 0.100 3.900 12 C -0.091 4.091 13 H 0.098 0.902 14 C -0.110 4.110 15 C -0.117 4.117 16 C -0.136 4.136 17 C 0.190 3.810 18 H 0.051 0.949 19 N -0.726 5.726 20 C -0.240 4.240 21 H 0.070 0.930 22 C -0.013 4.013 23 N -0.931 5.931 24 Si 0.906 3.094 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.286 1.286 28 C -0.095 4.095 29 H 0.076 0.924 30 C 0.119 3.881 31 C -0.105 4.105 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.053 0.947 46 H 0.056 0.944 47 H 0.063 0.937 48 H 0.384 0.616 49 H 0.256 0.744 50 H 0.074 0.926 51 H 0.070 0.930 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.563 8.906 23.174 24.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.087 4.087 3 C -0.141 4.141 4 C -0.134 4.134 5 C -0.129 4.129 6 C -0.060 4.060 7 C -0.137 4.137 8 C 0.312 3.688 9 O -0.404 6.404 10 N -0.352 5.352 11 C -0.024 4.024 12 C -0.111 4.111 13 H 0.116 0.884 14 C -0.148 4.148 15 C -0.155 4.155 16 C -0.177 4.177 17 C 0.080 3.920 18 H 0.069 0.931 19 N -0.367 5.367 20 C -0.371 4.371 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.579 5.579 24 Si 0.737 3.263 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.115 4.115 29 H 0.094 0.906 30 C -0.003 4.003 31 C -0.123 4.123 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.081 0.919 48 H 0.218 0.782 49 H 0.066 0.934 50 H 0.093 0.907 51 H 0.089 0.911 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.776 9.235 22.532 24.508 hybrid contribution 0.177 -0.408 -0.988 1.084 sum -2.598 8.827 21.544 23.426 Atomic orbital electron populations 1.20783 0.91266 1.02908 1.02077 1.19861 0.96010 0.93108 0.99747 1.20994 0.94284 0.97375 1.01448 1.21063 0.94302 0.97829 1.00179 1.20952 0.99652 0.92012 1.00252 1.19273 0.93528 0.93652 0.99540 1.20659 1.01932 0.96063 0.95076 1.20102 0.77893 0.79713 0.91048 1.90764 1.50413 1.53019 1.46238 1.48695 1.56102 1.21745 1.08664 1.22652 0.96044 0.92346 0.91321 1.22395 0.94214 0.98606 0.95837 0.88380 1.21492 0.95525 0.99010 0.98749 1.21519 0.97261 1.00783 0.95978 1.22312 0.99353 1.00942 0.95049 1.19656 0.90556 0.96461 0.85303 0.93150 1.42500 1.31979 1.56562 1.05699 1.19174 1.07732 1.20692 0.89531 0.91239 1.24747 0.97823 1.00504 0.97801 1.69655 1.20658 1.44016 1.23598 0.86294 0.78052 0.79773 0.82203 1.21324 1.21749 1.21326 1.21704 0.98259 0.96900 0.94601 0.90583 1.21863 0.99865 0.95022 0.83524 1.20843 0.93363 0.97630 1.00437 0.91322 0.91586 0.91486 0.86307 0.86128 0.86334 0.88209 0.88189 0.91435 0.90760 0.92626 0.91992 0.92221 0.92814 0.92577 0.91867 0.78178 0.93435 0.90732 0.91137 0.86327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 36.00 0.36 -0.57 16 2 C -0.09 -0.95 5.88 -104.62 -0.62 -1.56 16 3 C -0.12 -1.28 9.70 -39.58 -0.38 -1.66 16 4 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 5 C -0.11 -1.27 9.70 -39.58 -0.38 -1.66 16 6 C -0.06 -0.71 4.37 -104.62 -0.46 -1.17 16 7 C -0.10 -1.02 4.84 -29.03 -0.14 -1.16 16 8 C 0.52 7.83 7.85 -10.99 -0.09 7.74 16 9 O -0.53 -10.45 16.37 5.56 0.09 -10.36 16 10 N -0.62 -8.63 2.86 -170.02 -0.49 -9.12 16 11 C 0.10 1.01 5.96 -1.90 -0.01 1.00 16 12 C -0.09 -1.03 3.72 -88.55 -0.33 -1.36 16 13 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 14 C -0.11 -1.27 4.81 -26.93 -0.13 -1.40 16 15 C -0.12 -1.54 5.93 -26.77 -0.16 -1.70 16 16 C -0.14 -2.37 5.37 -26.66 -0.14 -2.51 16 17 C 0.19 3.58 2.45 -69.03 -0.17 3.41 16 18 H 0.05 0.97 8.06 -51.93 -0.42 0.55 16 19 N -0.73 -17.80 5.02 -54.50 -0.27 -18.07 16 20 C -0.24 -6.57 9.91 -15.06 -0.15 -6.72 16 21 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 23 N -0.93 -28.40 13.06 55.49 0.72 -27.68 16 24 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 C -0.09 -1.47 2.39 -90.88 -0.22 -1.69 16 29 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 30 C 0.12 2.03 4.79 -3.34 -0.02 2.02 16 31 C -0.10 -1.23 9.36 -39.58 -0.37 -1.60 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 34 H 0.07 0.54 8.09 -51.93 -0.42 0.13 16 35 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 37 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 38 H 0.10 0.82 8.09 -51.93 -0.42 0.40 16 39 H 0.10 0.81 7.79 -51.93 -0.40 0.41 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.58 7.31 -51.93 -0.38 0.20 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.81 7.16 -51.93 -0.37 0.44 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.06 1.05 6.75 -51.93 -0.35 0.70 16 47 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 48 H 0.38 10.16 6.76 -40.82 -0.28 9.88 16 49 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 50 H 0.07 1.45 6.49 -51.93 -0.34 1.11 16 51 H 0.07 1.38 8.05 -51.93 -0.42 0.96 16 52 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 406.90 15.07 6.13 6.13 Total: -1.00 -33.61 406.90 -11.57 -45.18 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -8.84 Total: 9.16 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -3.89 Total: -12.68 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -0.04 Total: -54.87 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.61 -11.57 -45.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992801083.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.282 kcal (2) G-P(sol) polarization free energy of solvation -33.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds