Wall clock time and date at job start Wed Apr 1 2020 02:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00046 * 2 1 4 4 C 1.38212 * 120.00037 * 179.97438 * 3 2 1 5 5 C 1.38254 * 119.99905 * 359.85485 * 4 3 2 6 6 C 1.38212 * 120.00245 * 0.39802 * 5 4 3 7 7 C 1.50703 * 120.00282 * 179.80663 * 6 5 4 8 8 C 1.50702 * 109.47254 * 269.72867 * 7 6 5 9 9 O 1.21277 * 119.99865 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99770 * 179.97438 * 8 7 6 11 11 C 1.48662 * 125.78471 * 0.02992 * 10 8 7 12 12 C 1.53068 * 103.44213 * 155.62133 * 11 10 8 13 13 H 1.09004 * 111.35412 * 284.01375 * 12 11 10 14 14 C 1.51613 * 116.67633 * 155.89116 * 12 11 10 15 15 C 1.53815 * 107.02482 * 183.73892 * 14 12 11 16 16 C 1.52525 * 111.70112 * 57.53311 * 15 14 12 17 17 C 1.52939 * 111.74231 * 306.14992 * 16 15 14 18 18 H 1.09000 * 109.99714 * 176.59604 * 17 16 15 19 19 N 1.46507 * 109.42303 * 297.53305 * 17 16 15 20 20 C 1.36932 * 119.99861 * 207.37194 * 19 17 16 21 21 H 1.08001 * 120.00605 * 0.02562 * 20 19 17 22 22 C 1.38811 * 119.99870 * 180.02562 * 20 19 17 23 23 N 1.31617 * 120.00170 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00040 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47206 * 359.97438 * 24 22 20 26 26 H 1.48506 * 109.47045 * 119.99718 * 24 22 20 27 27 H 1.48498 * 109.47048 * 239.99623 * 24 22 20 28 28 C 1.51440 * 107.50712 * 56.90080 * 17 16 15 29 29 H 1.09005 * 109.87069 * 54.53542 * 28 17 16 30 30 C 1.48244 * 125.78438 * 180.02562 * 10 8 7 31 31 C 1.38214 * 119.99802 * 180.02562 * 2 1 3 32 32 H 1.08997 * 109.46831 * 269.97623 * 1 2 3 33 33 H 1.09002 * 109.47228 * 29.97675 * 1 2 3 34 34 H 1.08997 * 109.47243 * 149.97480 * 1 2 3 35 35 H 1.07995 * 120.00149 * 0.02562 * 3 2 1 36 36 H 1.08006 * 120.00154 * 180.02562 * 4 3 2 37 37 H 1.08001 * 120.00319 * 180.21204 * 5 4 3 38 38 H 1.09007 * 109.46990 * 149.72815 * 7 6 5 39 39 H 1.08995 * 109.46934 * 29.72982 * 7 6 5 40 40 H 1.08998 * 110.62817 * 37.12979 * 11 10 8 41 41 H 1.08999 * 110.75775 * 274.17066 * 11 10 8 42 42 H 1.09003 * 109.94296 * 303.11204 * 14 12 11 43 43 H 1.08995 * 109.94782 * 64.27334 * 14 12 11 44 44 H 1.08994 * 109.03711 * 178.11184 * 15 14 12 45 45 H 1.09003 * 109.03013 * 296.96772 * 15 14 12 46 46 H 1.08998 * 109.04644 * 66.52114 * 16 15 14 47 47 H 1.09000 * 109.04247 * 185.39951 * 16 15 14 48 48 H 0.96996 * 119.99908 * 27.37813 * 19 17 16 49 49 H 0.96996 * 120.00529 * 180.02562 * 23 22 20 50 50 H 1.09005 * 110.16574 * 57.71804 * 30 10 8 51 51 H 1.08997 * 110.17051 * 295.92284 * 30 10 8 52 52 H 1.07996 * 120.00044 * 359.97334 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 0.0000 0.0041 6 6 3.5806 -1.1970 -0.0012 7 6 4.3341 -2.5021 -0.0017 8 6 4.5844 -2.9371 -1.4227 9 8 4.1894 -2.2548 -2.3442 10 7 5.2473 -4.0844 -1.6693 11 6 5.7853 -5.0154 -0.6428 12 6 5.8504 -6.3565 -1.3778 13 1 4.8610 -6.8031 -1.4770 14 6 6.8422 -7.3745 -0.8501 15 6 6.7915 -8.5855 -1.7972 16 6 7.1044 -8.1893 -3.2365 17 6 6.2041 -7.0511 -3.7193 18 1 6.4911 -6.7507 -4.7270 19 7 4.8082 -7.4957 -3.7077 20 6 3.9043 -6.9364 -4.5709 21 1 4.2204 -6.1678 -5.2606 22 6 2.5816 -7.3572 -4.5595 23 7 2.1963 -8.2943 -3.7194 24 14 1.3483 -6.5937 -5.7366 25 1 2.0283 -5.5704 -6.5708 26 1 0.7810 -7.6500 -6.6129 27 1 0.2553 -5.9535 -4.9617 28 6 6.3845 -5.8907 -2.7631 29 1 7.4413 -5.6347 -2.6864 30 6 5.5632 -4.6319 -3.0102 31 6 2.1980 -1.1970 -0.0005 32 1 -0.3633 -0.0004 1.0276 33 1 -0.3634 0.8902 -0.5135 34 1 -0.3633 -0.8897 -0.5142 35 1 1.6583 2.1326 0.0004 36 1 4.1205 2.1327 0.0010 37 1 5.3517 -0.0001 0.0080 38 1 3.7453 -3.2618 0.5125 39 1 5.2868 -2.3718 0.5116 40 1 5.1103 -5.0776 0.2107 41 1 6.7798 -4.7044 -0.3226 42 1 7.8454 -6.9482 -0.8452 43 1 6.5625 -7.6779 0.1587 44 1 7.5192 -9.3264 -1.4662 45 1 5.7951 -9.0256 -1.7583 46 1 8.1437 -7.8667 -3.2987 47 1 6.9630 -9.0557 -3.8826 48 1 4.5243 -8.1862 -3.0884 49 1 1.2721 -8.5887 -3.7117 50 1 6.1450 -3.9099 -3.5834 51 1 4.6442 -4.8808 -3.5407 52 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992801085.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:13 Heat of formation + Delta-G solvation = -7.989430 kcal Electronic energy + Delta-G solvation = -30665.974023 eV Core-core repulsion = 26822.662758 eV Total energy + Delta-G solvation = -3843.311265 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.31479 -39.50044 -38.20006 -35.38593 -33.65020 -33.46658 -32.03831 -31.38140 -30.43651 -29.00943 -27.76525 -26.92046 -26.67280 -24.42488 -23.21067 -22.14220 -21.13746 -20.88768 -20.51594 -18.84255 -18.70808 -17.17783 -16.63880 -16.51066 -15.89811 -15.49114 -14.97124 -14.80642 -14.64435 -14.49077 -14.05537 -13.88145 -13.73863 -13.55833 -13.18852 -12.95854 -12.91888 -12.71544 -12.53760 -12.36066 -12.23087 -11.91642 -11.83791 -11.75353 -11.49523 -11.33958 -11.16607 -11.05887 -10.96616 -10.85915 -10.74995 -10.37518 -10.32220 -10.07915 -9.89518 -9.54215 -9.49414 -9.36686 -8.88985 -8.73561 -8.55253 -8.18627 -6.97589 -5.78271 -3.05661 1.35782 1.43879 2.99479 3.28499 3.45290 3.52964 3.54267 3.82552 4.60335 4.65277 4.68955 4.77330 4.88125 4.89395 5.08638 5.11707 5.19210 5.25198 5.29578 5.42182 5.47081 5.51478 5.51798 5.54255 5.57741 5.63077 5.66932 5.69049 5.78915 5.78994 5.84014 5.96091 5.99064 6.04886 6.08825 6.10527 6.14302 6.25181 6.33926 6.39820 6.46304 6.56358 6.58713 6.61882 6.64638 6.68501 6.77825 6.88001 6.89696 7.04393 7.10445 7.71419 7.91714 8.40512 8.54323 9.53147 10.08874 10.43834 11.44023 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010005 B = 0.003559 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.972126 B = 7864.609462 C = 9810.015211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.086 4.086 3 C -0.125 4.125 4 C -0.117 4.117 5 C -0.112 4.112 6 C -0.056 4.056 7 C -0.099 4.099 8 C 0.526 3.474 9 O -0.537 6.537 10 N -0.615 5.615 11 C 0.110 3.890 12 C -0.106 4.106 13 H 0.107 0.893 14 C -0.098 4.098 15 C -0.114 4.114 16 C -0.120 4.120 17 C 0.188 3.812 18 H 0.053 0.947 19 N -0.716 5.716 20 C -0.236 4.236 21 H 0.071 0.929 22 C -0.009 4.009 23 N -0.931 5.931 24 Si 0.899 3.101 25 H -0.279 1.279 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.117 4.117 29 H 0.060 0.940 30 C 0.117 3.883 31 C -0.104 4.104 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.052 0.948 45 H 0.067 0.933 46 H 0.052 0.948 47 H 0.063 0.937 48 H 0.385 0.615 49 H 0.254 0.746 50 H 0.052 0.948 51 H 0.099 0.901 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.676 10.510 12.493 18.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.143 4.143 4 C -0.136 4.136 5 C -0.130 4.130 6 C -0.056 4.056 7 C -0.139 4.139 8 C 0.314 3.686 9 O -0.414 6.414 10 N -0.349 5.349 11 C -0.012 4.012 12 C -0.125 4.125 13 H 0.125 0.875 14 C -0.136 4.136 15 C -0.152 4.152 16 C -0.159 4.159 17 C 0.077 3.923 18 H 0.071 0.929 19 N -0.358 5.358 20 C -0.367 4.367 21 H 0.089 0.911 22 C -0.205 4.205 23 N -0.580 5.580 24 Si 0.730 3.270 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.139 4.139 29 H 0.079 0.921 30 C -0.004 4.004 31 C -0.122 4.122 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.086 0.914 46 H 0.071 0.929 47 H 0.082 0.918 48 H 0.220 0.780 49 H 0.063 0.937 50 H 0.070 0.930 51 H 0.117 0.883 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.320 11.033 11.851 17.770 hybrid contribution -0.768 0.147 -0.415 0.885 sum 6.552 11.180 11.437 17.283 Atomic orbital electron populations 1.20788 0.91289 1.02929 1.02085 1.19863 0.96016 0.93085 0.99666 1.20969 0.94267 0.97302 1.01753 1.21029 0.94286 0.97712 1.00525 1.20923 0.99529 0.92012 1.00585 1.19293 0.93530 0.93684 0.99107 1.20667 1.01804 0.96006 0.95390 1.20020 0.77787 0.79937 0.90862 1.90719 1.50721 1.53562 1.46381 1.49153 1.55635 1.21440 1.08702 1.22056 0.98030 0.89871 0.91277 1.22102 1.01941 0.93459 0.94962 0.87529 1.21280 0.98187 0.95818 0.98343 1.21453 1.02078 0.96902 0.94783 1.21643 0.98664 0.99466 0.96112 1.19736 0.86482 0.90497 0.95631 0.92913 1.42461 1.02949 1.46140 1.44203 1.19242 0.89419 1.15772 1.12251 0.91130 1.24659 0.97237 0.99100 0.99482 1.69648 1.16668 1.32262 1.39377 0.86232 0.81865 0.78348 0.80530 1.20463 1.21939 1.21950 1.22590 0.97368 0.95854 0.98120 0.92141 1.21774 1.01632 0.93450 0.83505 1.20910 0.93471 0.97771 1.00034 0.91318 0.91659 0.91375 0.86395 0.86258 0.86450 0.88139 0.88388 0.91208 0.91907 0.92397 0.92281 0.92892 0.91404 0.92884 0.91784 0.78014 0.93652 0.92967 0.88299 0.86155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 10.01 36.01 0.36 -0.80 16 2 C -0.09 -1.10 5.88 -104.62 -0.62 -1.71 16 3 C -0.12 -1.47 9.70 -39.58 -0.38 -1.85 16 4 C -0.12 -1.38 10.05 -39.59 -0.40 -1.78 16 5 C -0.11 -1.44 9.70 -39.59 -0.38 -1.83 16 6 C -0.06 -0.78 4.37 -104.62 -0.46 -1.24 16 7 C -0.10 -1.29 4.86 -29.03 -0.14 -1.43 16 8 C 0.53 9.26 7.86 -10.99 -0.09 9.18 16 9 O -0.54 -11.77 16.38 5.56 0.09 -11.68 16 10 N -0.62 -10.40 3.38 -170.86 -0.58 -10.98 16 11 C 0.11 1.48 6.34 -2.81 -0.02 1.46 16 12 C -0.11 -1.60 2.40 -89.90 -0.22 -1.81 16 13 H 0.11 2.05 6.76 -51.93 -0.35 1.70 16 14 C -0.10 -1.23 5.71 -27.01 -0.15 -1.38 16 15 C -0.11 -1.58 5.58 -26.55 -0.15 -1.73 16 16 C -0.12 -1.81 5.45 -27.01 -0.15 -1.95 16 17 C 0.19 3.40 2.99 -68.75 -0.21 3.20 16 18 H 0.05 1.00 8.07 -51.93 -0.42 0.58 16 19 N -0.72 -16.34 3.90 -54.22 -0.21 -16.55 16 20 C -0.24 -6.22 8.14 -15.06 -0.12 -6.34 16 21 H 0.07 1.87 7.59 -52.49 -0.40 1.47 16 22 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 23 N -0.93 -27.21 13.06 55.49 0.72 -26.49 16 24 Si 0.90 22.75 29.55 -169.99 -5.02 17.72 16 25 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 27 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 28 C -0.12 -1.91 2.12 -90.37 -0.19 -2.10 16 29 H 0.06 0.88 7.94 -51.93 -0.41 0.47 16 30 C 0.12 2.21 6.58 -3.43 -0.02 2.18 16 31 C -0.10 -1.46 9.36 -39.58 -0.37 -1.83 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 34 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 35 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 37 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 38 H 0.10 1.17 7.82 -51.92 -0.41 0.76 16 39 H 0.10 1.01 8.08 -51.93 -0.42 0.59 16 40 H 0.07 0.83 7.55 -51.93 -0.39 0.44 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.65 7.99 -51.93 -0.41 0.23 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 1.09 7.00 -51.93 -0.36 0.73 16 46 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 47 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 48 H 0.38 9.36 6.04 -40.82 -0.25 9.11 16 49 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 50 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 51 H 0.10 2.28 5.85 -51.93 -0.30 1.98 16 52 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 404.59 15.07 6.10 6.10 Total: -1.00 -32.09 404.59 -11.45 -43.54 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -8.75 Total: 10.46 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -3.80 Total: -12.12 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.06 Total: -54.03 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.09 Total: -11.68 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.09 -11.45 -43.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992801085.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.550 kcal (2) G-P(sol) polarization free energy of solvation -32.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds