Wall clock time and date at job start Wed Apr 1 2020 02:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00046 * 2 1 4 4 C 1.38212 * 120.00037 * 179.97438 * 3 2 1 5 5 C 1.38254 * 119.99905 * 359.85485 * 4 3 2 6 6 C 1.38212 * 120.00245 * 0.39802 * 5 4 3 7 7 C 1.50703 * 120.00282 * 179.80663 * 6 5 4 8 8 C 1.50702 * 109.47254 * 269.72867 * 7 6 5 9 9 O 1.21277 * 119.99865 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99770 * 179.97438 * 8 7 6 11 11 C 1.48662 * 125.78471 * 0.02992 * 10 8 7 12 12 C 1.53068 * 103.44213 * 155.62133 * 11 10 8 13 13 H 1.09004 * 111.35412 * 284.01375 * 12 11 10 14 14 C 1.51613 * 116.67633 * 155.89116 * 12 11 10 15 15 C 1.53815 * 107.02482 * 183.73892 * 14 12 11 16 16 C 1.52525 * 111.70112 * 57.53311 * 15 14 12 17 17 C 1.52939 * 111.74231 * 306.14992 * 16 15 14 18 18 H 1.09000 * 109.99714 * 176.59604 * 17 16 15 19 19 N 1.46507 * 109.42303 * 297.53305 * 17 16 15 20 20 C 1.36932 * 119.99861 * 207.37194 * 19 17 16 21 21 H 1.08001 * 120.00605 * 0.02562 * 20 19 17 22 22 C 1.38811 * 119.99870 * 180.02562 * 20 19 17 23 23 N 1.31617 * 120.00170 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00040 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47206 * 359.97438 * 24 22 20 26 26 H 1.48506 * 109.47045 * 119.99718 * 24 22 20 27 27 H 1.48498 * 109.47048 * 239.99623 * 24 22 20 28 28 C 1.51440 * 107.50712 * 56.90080 * 17 16 15 29 29 H 1.09005 * 109.87069 * 54.53542 * 28 17 16 30 30 C 1.48244 * 125.78438 * 180.02562 * 10 8 7 31 31 C 1.38214 * 119.99802 * 180.02562 * 2 1 3 32 32 H 1.08997 * 109.46831 * 269.97623 * 1 2 3 33 33 H 1.09002 * 109.47228 * 29.97675 * 1 2 3 34 34 H 1.08997 * 109.47243 * 149.97480 * 1 2 3 35 35 H 1.07995 * 120.00149 * 0.02562 * 3 2 1 36 36 H 1.08006 * 120.00154 * 180.02562 * 4 3 2 37 37 H 1.08001 * 120.00319 * 180.21204 * 5 4 3 38 38 H 1.09007 * 109.46990 * 149.72815 * 7 6 5 39 39 H 1.08995 * 109.46934 * 29.72982 * 7 6 5 40 40 H 1.08998 * 110.62817 * 37.12979 * 11 10 8 41 41 H 1.08999 * 110.75775 * 274.17066 * 11 10 8 42 42 H 1.09003 * 109.94296 * 303.11204 * 14 12 11 43 43 H 1.08995 * 109.94782 * 64.27334 * 14 12 11 44 44 H 1.08994 * 109.03711 * 178.11184 * 15 14 12 45 45 H 1.09003 * 109.03013 * 296.96772 * 15 14 12 46 46 H 1.08998 * 109.04644 * 66.52114 * 16 15 14 47 47 H 1.09000 * 109.04247 * 185.39951 * 16 15 14 48 48 H 0.96996 * 119.99908 * 27.37813 * 19 17 16 49 49 H 0.96996 * 120.00529 * 180.02562 * 23 22 20 50 50 H 1.09005 * 110.16574 * 57.71804 * 30 10 8 51 51 H 1.08997 * 110.17051 * 295.92284 * 30 10 8 52 52 H 1.07996 * 120.00044 * 359.97334 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 0.0000 0.0041 6 6 3.5806 -1.1970 -0.0012 7 6 4.3341 -2.5021 -0.0017 8 6 4.5844 -2.9371 -1.4227 9 8 4.1894 -2.2548 -2.3442 10 7 5.2473 -4.0844 -1.6693 11 6 5.7853 -5.0154 -0.6428 12 6 5.8504 -6.3565 -1.3778 13 1 4.8610 -6.8031 -1.4770 14 6 6.8422 -7.3745 -0.8501 15 6 6.7915 -8.5855 -1.7972 16 6 7.1044 -8.1893 -3.2365 17 6 6.2041 -7.0511 -3.7193 18 1 6.4911 -6.7507 -4.7270 19 7 4.8082 -7.4957 -3.7077 20 6 3.9043 -6.9364 -4.5709 21 1 4.2204 -6.1678 -5.2606 22 6 2.5816 -7.3572 -4.5595 23 7 2.1963 -8.2943 -3.7194 24 14 1.3483 -6.5937 -5.7366 25 1 2.0283 -5.5704 -6.5708 26 1 0.7810 -7.6500 -6.6129 27 1 0.2553 -5.9535 -4.9617 28 6 6.3845 -5.8907 -2.7631 29 1 7.4413 -5.6347 -2.6864 30 6 5.5632 -4.6319 -3.0102 31 6 2.1980 -1.1970 -0.0005 32 1 -0.3633 -0.0004 1.0276 33 1 -0.3634 0.8902 -0.5135 34 1 -0.3633 -0.8897 -0.5142 35 1 1.6583 2.1326 0.0004 36 1 4.1205 2.1327 0.0010 37 1 5.3517 -0.0001 0.0080 38 1 3.7453 -3.2618 0.5125 39 1 5.2868 -2.3718 0.5116 40 1 5.1103 -5.0776 0.2107 41 1 6.7798 -4.7044 -0.3226 42 1 7.8454 -6.9482 -0.8452 43 1 6.5625 -7.6779 0.1587 44 1 7.5192 -9.3264 -1.4662 45 1 5.7951 -9.0256 -1.7583 46 1 8.1437 -7.8667 -3.2987 47 1 6.9630 -9.0557 -3.8826 48 1 4.5243 -8.1862 -3.0884 49 1 1.2721 -8.5887 -3.7117 50 1 6.1450 -3.9099 -3.5834 51 1 4.6442 -4.8808 -3.5407 52 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992801085.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:12 Heat of formation + Delta-G solvation = -25.343083 kcal Electronic energy + Delta-G solvation = -30666.726534 eV Core-core repulsion = 26822.662758 eV Total energy + Delta-G solvation = -3844.063776 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.61014 -40.57222 -39.47084 -36.83178 -35.35372 -34.47416 -33.10501 -32.95768 -31.68522 -30.62640 -28.93541 -28.08454 -27.66187 -25.94674 -24.94438 -23.10593 -22.24476 -22.13077 -21.65580 -20.11949 -20.09666 -19.16442 -17.95025 -17.48299 -17.07978 -16.63524 -16.61145 -16.13368 -15.92118 -15.67766 -15.55867 -15.30307 -15.10627 -14.60068 -14.40822 -14.19422 -14.09165 -13.86896 -13.65232 -13.62913 -13.32704 -13.14635 -13.11506 -12.91645 -12.80996 -12.76815 -12.66818 -12.59414 -12.43504 -12.13818 -11.97196 -11.88200 -11.80891 -11.58869 -11.33266 -11.09870 -10.94311 -10.89620 -10.56038 -9.71528 -9.58425 -9.49640 -8.94832 -7.94889 -5.17295 0.39484 0.48083 1.37005 1.41040 1.47238 1.65455 2.04145 2.52710 2.84330 3.38986 3.47355 3.64225 3.76089 3.83544 3.87742 3.99318 4.04070 4.16120 4.21388 4.28806 4.34953 4.40362 4.42531 4.43954 4.53196 4.58023 4.59085 4.68172 4.69358 4.73768 4.77308 4.78470 4.81221 4.91623 4.94937 4.97692 5.12678 5.13376 5.15551 5.25105 5.26813 5.29547 5.42855 5.48636 5.50288 5.54299 5.59012 5.60055 5.63464 5.68770 5.79580 6.12707 6.29515 6.61683 7.19307 7.37483 8.15985 8.38485 9.28424 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010005 B = 0.003559 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.972126 B = 7864.609462 C = 9810.015211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.100 4.100 3 C -0.131 4.131 4 C -0.121 4.121 5 C -0.125 4.125 6 C -0.075 4.075 7 C -0.087 4.087 8 C 0.517 3.483 9 O -0.592 6.592 10 N -0.618 5.618 11 C 0.111 3.889 12 C -0.099 4.099 13 H 0.057 0.943 14 C -0.088 4.088 15 C -0.113 4.113 16 C -0.113 4.113 17 C 0.177 3.823 18 H 0.040 0.960 19 N -0.721 5.721 20 C -0.215 4.215 21 H 0.064 0.936 22 C -0.067 4.067 23 N -0.962 5.962 24 Si 0.945 3.055 25 H -0.277 1.277 26 H -0.289 1.289 27 H -0.303 1.303 28 C -0.109 4.109 29 H 0.096 0.904 30 C 0.117 3.883 31 C -0.132 4.132 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.143 0.857 36 H 0.147 0.853 37 H 0.134 0.866 38 H 0.113 0.887 39 H 0.134 0.866 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.089 0.911 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.034 0.966 46 H 0.087 0.913 47 H 0.049 0.951 48 H 0.377 0.623 49 H 0.247 0.753 50 H 0.049 0.951 51 H 0.044 0.956 52 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.565 11.701 14.769 21.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.100 4.100 3 C -0.149 4.149 4 C -0.139 4.139 5 C -0.143 4.143 6 C -0.075 4.075 7 C -0.126 4.126 8 C 0.307 3.693 9 O -0.473 6.473 10 N -0.351 5.351 11 C -0.010 4.010 12 C -0.118 4.118 13 H 0.076 0.924 14 C -0.126 4.126 15 C -0.151 4.151 16 C -0.151 4.151 17 C 0.068 3.932 18 H 0.058 0.942 19 N -0.362 5.362 20 C -0.347 4.347 21 H 0.082 0.918 22 C -0.260 4.260 23 N -0.614 5.614 24 Si 0.777 3.223 25 H -0.202 1.202 26 H -0.216 1.216 27 H -0.231 1.231 28 C -0.131 4.131 29 H 0.115 0.885 30 C -0.005 4.005 31 C -0.150 4.150 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.161 0.839 36 H 0.164 0.836 37 H 0.152 0.848 38 H 0.131 0.869 39 H 0.152 0.848 40 H 0.106 0.894 41 H 0.122 0.878 42 H 0.108 0.892 43 H 0.096 0.904 44 H 0.100 0.900 45 H 0.053 0.947 46 H 0.106 0.894 47 H 0.068 0.932 48 H 0.211 0.789 49 H 0.056 0.944 50 H 0.067 0.933 51 H 0.063 0.937 52 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.268 12.215 14.141 21.322 hybrid contribution -1.601 -0.157 -1.172 1.990 sum 8.667 12.059 12.969 19.716 Atomic orbital electron populations 1.20821 0.89917 1.03021 1.03183 1.20209 0.97316 0.93129 0.99357 1.21331 0.94689 0.97913 1.00951 1.21430 0.94569 0.98567 0.99320 1.21222 1.00535 0.92036 1.00512 1.19499 0.93619 0.94593 0.99805 1.20676 1.03727 0.95932 0.92269 1.20910 0.76621 0.79466 0.92287 1.90682 1.52853 1.55372 1.48429 1.49300 1.55351 1.21712 1.08751 1.22332 1.00425 0.87745 0.90471 1.21991 1.00259 0.94895 0.94670 0.92428 1.21264 0.98742 0.94006 0.98540 1.21448 1.00992 0.98300 0.94343 1.21563 0.99471 0.97409 0.96678 1.20036 0.84505 0.92747 0.95913 0.94221 1.42565 1.04607 1.45722 1.43276 1.19431 0.89977 1.14047 1.11267 0.91838 1.25177 0.98788 1.00536 1.01485 1.69750 1.16355 1.34048 1.41231 0.85478 0.80058 0.77669 0.79132 1.20198 1.21625 1.23142 1.22429 0.98781 0.93674 0.98198 0.88541 1.21563 0.99418 0.94914 0.84630 1.21075 0.94133 0.98154 1.01670 0.89668 0.90314 0.92493 0.83900 0.83553 0.84822 0.86891 0.84787 0.89376 0.87847 0.89222 0.90421 0.90045 0.94743 0.89409 0.93221 0.78941 0.94371 0.93276 0.93719 0.87119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.25 10.01 71.24 0.71 -1.54 16 2 C -0.10 -2.52 5.88 -19.87 -0.12 -2.64 16 3 C -0.13 -2.89 9.70 22.27 0.22 -2.67 16 4 C -0.12 -2.62 10.05 22.27 0.22 -2.40 16 5 C -0.13 -3.03 9.70 22.27 0.22 -2.82 16 6 C -0.07 -2.05 4.37 -19.86 -0.09 -2.13 16 7 C -0.09 -2.14 4.86 29.10 0.14 -1.99 16 8 C 0.52 18.17 7.86 87.66 0.69 18.86 16 9 O -0.59 -26.93 16.38 -3.02 -0.05 -26.98 16 10 N -0.62 -20.43 3.38 -812.88 -2.75 -23.18 16 11 C 0.11 2.62 6.34 85.98 0.55 3.17 16 12 C -0.10 -2.78 2.40 -10.33 -0.02 -2.81 16 13 H 0.06 2.24 6.76 -2.38 -0.02 2.22 16 14 C -0.09 -1.81 5.71 30.41 0.17 -1.64 16 15 C -0.11 -2.82 5.58 30.71 0.17 -2.65 16 16 C -0.11 -3.15 5.45 30.42 0.17 -2.98 16 17 C 0.18 6.37 2.99 44.46 0.13 6.51 16 18 H 0.04 1.52 8.07 -2.39 -0.02 1.50 16 19 N -0.72 -34.08 3.90 -325.46 -1.27 -35.35 16 20 C -0.21 -11.83 8.14 84.03 0.68 -11.15 16 21 H 0.06 3.53 7.59 -2.91 -0.02 3.51 16 22 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 23 N -0.96 -58.70 13.06 21.65 0.28 -58.42 16 24 Si 0.94 48.82 29.55 68.60 2.03 50.84 16 25 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 26 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 27 H -0.30 -16.07 7.11 99.48 0.71 -15.36 16 28 C -0.11 -3.39 2.12 -10.63 -0.02 -3.41 16 29 H 0.10 2.39 7.94 -2.38 -0.02 2.37 16 30 C 0.12 4.46 6.58 85.82 0.56 5.03 16 31 C -0.13 -3.80 9.36 22.27 0.21 -3.59 16 32 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.08 1.33 8.09 -2.39 -0.02 1.31 16 34 H 0.06 1.24 8.09 -2.39 -0.02 1.22 16 35 H 0.14 2.33 8.06 -2.91 -0.02 2.30 16 36 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 37 H 0.13 2.67 8.06 -2.91 -0.02 2.65 16 38 H 0.11 2.47 7.82 -2.38 -0.02 2.45 16 39 H 0.13 2.28 8.08 -2.39 -0.02 2.26 16 40 H 0.09 1.79 7.55 -2.39 -0.02 1.78 16 41 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.09 1.39 7.99 -2.39 -0.02 1.37 16 43 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.03 1.09 7.00 -2.39 -0.02 1.07 16 46 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 48 H 0.38 19.11 6.04 -92.71 -0.56 18.55 16 49 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 50 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 51 H 0.04 2.18 5.85 -2.39 -0.01 2.17 16 52 H 0.11 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -76.20 404.59 3.64 -72.55 By element: Atomic # 1 Polarization: 34.53 SS G_CDS: 0.34 Total: 34.86 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: 5.06 Total: -14.33 kcal Atomic # 7 Polarization: -113.22 SS G_CDS: -3.74 Total: -116.96 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.05 Total: -26.98 kcal Atomic # 14 Polarization: 48.82 SS G_CDS: 2.03 Total: 50.84 kcal Total: -76.20 3.64 -72.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992801085.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.211 kcal (2) G-P(sol) polarization free energy of solvation -76.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds