Wall clock time and date at job start Wed Apr 1 2020 02:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38261 * 119.99864 * 2 1 4 4 C 1.38216 * 119.99743 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00203 * 0.02562 * 4 3 2 6 6 C 1.38213 * 119.99888 * 359.95697 * 5 4 3 7 7 C 1.50699 * 119.99958 * 180.02562 * 6 5 4 8 8 C 1.50706 * 109.46817 * 89.99867 * 7 6 5 9 9 O 1.21279 * 120.00072 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99762 * 179.97438 * 8 7 6 11 11 C 1.47328 * 125.73742 * 359.69908 * 10 8 7 12 12 C 1.55140 * 106.87002 * 179.85544 * 11 10 8 13 13 H 1.09002 * 112.32094 * 215.83481 * 12 11 10 14 14 C 1.52930 * 107.50169 * 92.25458 * 12 11 10 15 15 C 1.52249 * 110.24591 * 191.73157 * 14 12 11 16 16 C 1.51838 * 110.43369 * 61.74541 * 15 14 12 17 17 C 1.49989 * 113.13005 * 307.28549 * 16 15 14 18 18 H 1.09000 * 108.55345 * 164.15857 * 17 16 15 19 19 N 1.46501 * 107.15497 * 280.33560 * 17 16 15 20 20 C 1.36934 * 119.99940 * 281.65503 * 19 17 16 21 21 H 1.07999 * 120.00667 * 0.02562 * 20 19 17 22 22 C 1.38814 * 119.99814 * 180.02562 * 20 19 17 23 23 N 1.31619 * 120.00078 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 120.00064 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47209 * 89.99894 * 24 22 20 26 26 H 1.48503 * 109.46905 * 209.99938 * 24 22 20 27 27 H 1.48499 * 109.46908 * 329.99470 * 24 22 20 28 28 C 1.49686 * 116.76967 * 41.69102 * 17 16 15 29 29 H 1.08998 * 108.61130 * 198.54446 * 28 17 16 30 30 C 1.47806 * 125.74143 * 179.97438 * 10 8 7 31 31 C 1.38213 * 120.00196 * 180.21567 * 2 1 3 32 32 H 1.08996 * 109.47280 * 89.99626 * 1 2 3 33 33 H 1.08996 * 109.46570 * 210.00077 * 1 2 3 34 34 H 1.09000 * 109.46910 * 329.99613 * 1 2 3 35 35 H 1.07998 * 120.00294 * 0.02562 * 3 2 1 36 36 H 1.08001 * 119.99888 * 180.02562 * 4 3 2 37 37 H 1.07997 * 120.00029 * 179.97438 * 5 4 3 38 38 H 1.09000 * 109.46670 * 330.00090 * 7 6 5 39 39 H 1.09000 * 109.47247 * 209.99804 * 7 6 5 40 40 H 1.09000 * 109.97909 * 299.34575 * 11 10 8 41 41 H 1.08993 * 109.98211 * 60.64242 * 11 10 8 42 42 H 1.09005 * 109.34325 * 311.96617 * 14 12 11 43 43 H 1.09005 * 109.34060 * 71.48834 * 14 12 11 44 44 H 1.08999 * 109.31209 * 182.05110 * 15 14 12 45 45 H 1.09011 * 109.30371 * 301.45383 * 15 14 12 46 46 H 1.09006 * 108.77939 * 67.74102 * 16 15 14 47 47 H 1.09002 * 108.78117 * 186.05193 * 16 15 14 48 48 H 0.97004 * 119.99645 * 101.65979 * 19 17 16 49 49 H 0.97001 * 120.00247 * 179.97438 * 23 22 20 50 50 H 1.09003 * 110.51587 * 323.01144 * 30 10 8 51 51 H 1.09001 * 110.51389 * 85.59659 * 30 10 8 52 52 H 1.07997 * 119.99736 * 0.03851 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.2718 0.0000 0.0005 6 6 3.5807 -1.1969 0.0009 7 6 4.3342 -2.5020 0.0015 8 6 4.5852 -2.9365 1.4226 9 8 4.1914 -2.2533 2.3441 10 7 5.2473 -4.0842 1.6694 11 6 5.7737 -5.0099 0.6513 12 6 6.4545 -6.1772 1.4133 13 1 7.3438 -6.5436 0.9004 14 6 5.4084 -7.2770 1.5998 15 6 5.9136 -8.3235 2.5834 16 6 6.1544 -7.6979 3.9458 17 6 7.0353 -6.4852 3.8899 18 1 6.9339 -5.9393 4.8279 19 7 8.4182 -6.9597 3.7951 20 6 9.0652 -7.4115 4.9142 21 1 8.5561 -7.4185 5.8666 22 6 10.3756 -7.8605 4.8244 23 7 10.9978 -8.2944 5.9001 24 14 11.2566 -7.8478 3.1772 25 1 11.9519 -6.5479 2.9978 26 1 12.2507 -8.9503 3.1391 27 1 10.2676 -8.0351 2.0855 28 6 6.7935 -5.5275 2.7652 29 1 7.6762 -4.8988 2.6479 30 6 5.5623 -4.6287 3.0069 31 6 2.1981 -1.1969 -0.0045 32 1 -0.3633 0.0001 -1.0276 33 1 -0.3632 -0.8900 0.5138 34 1 -0.3633 0.8900 0.5139 35 1 1.6583 2.1327 0.0004 36 1 4.1205 2.1327 0.0010 37 1 5.3517 0.0000 0.0005 38 1 5.2867 -2.3718 -0.5123 39 1 3.7452 -3.2619 -0.5121 40 1 4.9581 -5.3896 0.0359 41 1 6.5057 -4.4989 0.0261 42 1 4.4868 -6.8376 1.9819 43 1 5.2081 -7.7513 0.6390 44 1 5.1728 -9.1175 2.6771 45 1 6.8466 -8.7471 2.2113 46 1 5.1948 -7.4056 4.3723 47 1 6.6154 -8.4409 4.5966 48 1 8.8754 -6.9537 2.9396 49 1 11.9134 -8.6085 5.8374 50 1 5.8074 -3.8232 3.6992 51 1 4.7266 -5.2164 3.3866 52 1 1.6581 -2.1322 -0.0087 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992801086.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:17 Heat of formation + Delta-G solvation = -6.889443 kcal Electronic energy + Delta-G solvation = -29966.325044 eV Core-core repulsion = 26123.061478 eV Total energy + Delta-G solvation = -3843.263566 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.74135 -39.74524 -38.48109 -35.82154 -33.74303 -33.66777 -32.28042 -31.68349 -30.87115 -29.76990 -28.13552 -27.09811 -26.74941 -24.62251 -22.79489 -22.29452 -22.19865 -21.23740 -20.91961 -19.21634 -18.19475 -17.67068 -16.94762 -16.72253 -16.30633 -15.78982 -15.40308 -14.99813 -14.78996 -14.60656 -14.14531 -14.11630 -13.96465 -13.80110 -13.39899 -13.33249 -13.11871 -13.07840 -12.84814 -12.65268 -12.48966 -12.17730 -12.09223 -12.07376 -11.91876 -11.50543 -11.31085 -11.29137 -11.19293 -11.10935 -10.92419 -10.75715 -10.29387 -10.03844 -9.99603 -9.86986 -9.70195 -9.56568 -8.97185 -8.89564 -8.77725 -8.66029 -7.26017 -5.77065 -3.12064 1.13074 1.21715 2.58064 2.90042 3.34722 3.37351 3.43761 3.58558 4.36929 4.41694 4.47734 4.53522 4.58024 4.67442 4.76666 4.81336 4.89833 4.99225 5.06435 5.11400 5.21813 5.26546 5.28568 5.31739 5.34182 5.41864 5.45640 5.48904 5.54940 5.55732 5.65453 5.68805 5.74012 5.83887 5.85944 5.91695 5.93249 6.00609 6.02815 6.21265 6.24492 6.26931 6.28803 6.35434 6.36644 6.40537 6.67594 6.71084 6.81994 6.87024 7.08890 7.47094 7.99380 8.11573 8.41751 9.20565 9.92997 10.13300 11.41436 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020433 B = 0.002278 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.991952 B =12289.923303 C =12740.062137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.087 4.087 3 C -0.123 4.123 4 C -0.115 4.115 5 C -0.110 4.110 6 C -0.060 4.060 7 C -0.098 4.098 8 C 0.528 3.472 9 O -0.533 6.533 10 N -0.618 5.618 11 C 0.101 3.899 12 C -0.091 4.091 13 H 0.095 0.905 14 C -0.109 4.109 15 C -0.110 4.110 16 C -0.127 4.127 17 C 0.193 3.807 18 H 0.052 0.948 19 N -0.752 5.752 20 C -0.239 4.239 21 H 0.090 0.910 22 C 0.003 3.997 23 N -0.935 5.935 24 Si 0.883 3.117 25 H -0.286 1.286 26 H -0.293 1.293 27 H -0.277 1.277 28 C -0.094 4.094 29 H 0.082 0.918 30 C 0.116 3.884 31 C -0.105 4.105 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.053 0.947 45 H 0.063 0.937 46 H 0.040 0.960 47 H 0.077 0.923 48 H 0.358 0.642 49 H 0.259 0.741 50 H 0.078 0.922 51 H 0.070 0.930 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.918 12.784 -17.622 28.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.087 4.087 3 C -0.141 4.141 4 C -0.133 4.133 5 C -0.128 4.128 6 C -0.061 4.061 7 C -0.138 4.138 8 C 0.317 3.683 9 O -0.410 6.410 10 N -0.353 5.353 11 C -0.022 4.022 12 C -0.110 4.110 13 H 0.113 0.887 14 C -0.146 4.146 15 C -0.147 4.147 16 C -0.167 4.167 17 C 0.084 3.916 18 H 0.070 0.930 19 N -0.396 5.396 20 C -0.369 4.369 21 H 0.108 0.892 22 C -0.192 4.192 23 N -0.583 5.583 24 Si 0.714 3.286 25 H -0.213 1.213 26 H -0.219 1.219 27 H -0.204 1.204 28 C -0.114 4.114 29 H 0.101 0.899 30 C -0.007 4.007 31 C -0.123 4.123 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.082 0.918 46 H 0.058 0.942 47 H 0.096 0.904 48 H 0.191 0.809 49 H 0.069 0.931 50 H 0.097 0.903 51 H 0.089 0.911 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -19.114 13.174 -16.886 28.706 hybrid contribution 0.963 -0.171 -1.116 1.483 sum -18.152 13.003 -18.002 28.682 Atomic orbital electron populations 1.20782 0.91247 1.02848 1.02147 1.19863 0.96009 0.93103 0.99772 1.21008 0.94287 0.97401 1.01371 1.21078 0.94305 0.97867 1.00081 1.20968 0.99728 0.92006 1.00129 1.19268 0.93518 0.93625 0.99655 1.20659 1.02153 0.96098 0.94892 1.20123 0.77569 0.79487 0.91150 1.90737 1.50713 1.53113 1.46412 1.48672 1.56273 1.21695 1.08671 1.22433 0.97902 0.90713 0.91144 1.22124 0.98641 0.94166 0.96035 0.88665 1.21435 0.97698 0.96149 0.99355 1.20997 1.00851 0.97082 0.95820 1.21299 0.98643 0.99777 0.96936 1.18788 0.85715 0.91760 0.95338 0.92993 1.42962 1.10353 1.78241 1.07996 1.19048 0.95085 1.34176 0.88545 0.89224 1.24661 0.96845 1.01285 0.96452 1.69698 1.12461 1.49068 1.27056 0.86569 0.79699 0.77368 0.84963 1.21255 1.21910 1.20355 1.21593 0.97557 0.97094 0.95166 0.89925 1.22269 0.97173 0.96872 0.84349 1.20833 0.93325 0.97603 1.00580 0.91274 0.91540 0.91575 0.86267 0.86072 0.86280 0.88026 0.88114 0.91212 0.91505 0.92165 0.92374 0.92859 0.91804 0.94158 0.90390 0.80895 0.93131 0.90314 0.91130 0.86358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.01 36.01 0.36 -0.43 16 2 C -0.09 -0.84 5.88 -104.62 -0.62 -1.45 16 3 C -0.12 -1.14 9.70 -39.58 -0.38 -1.52 16 4 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 5 C -0.11 -1.16 9.70 -39.58 -0.38 -1.54 16 6 C -0.06 -0.65 4.37 -104.62 -0.46 -1.10 16 7 C -0.10 -0.92 5.03 -29.03 -0.15 -1.06 16 8 C 0.53 6.91 7.85 -10.98 -0.09 6.82 16 9 O -0.53 -9.19 16.31 5.56 0.09 -9.10 16 10 N -0.62 -7.56 3.34 -169.80 -0.57 -8.12 16 11 C 0.10 0.98 5.92 -2.46 -0.01 0.97 16 12 C -0.09 -1.08 3.48 -89.12 -0.31 -1.39 16 13 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 14 C -0.11 -1.24 4.74 -27.15 -0.13 -1.37 16 15 C -0.11 -1.54 5.90 -27.70 -0.16 -1.70 16 16 C -0.13 -2.08 5.34 -28.82 -0.15 -2.24 16 17 C 0.19 3.42 2.35 -71.06 -0.17 3.25 16 18 H 0.05 1.00 7.98 -51.93 -0.41 0.59 16 19 N -0.75 -16.58 4.75 -56.51 -0.27 -16.84 16 20 C -0.24 -6.45 9.80 -15.06 -0.15 -6.60 16 21 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 22 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 23 N -0.93 -28.96 13.97 55.49 0.78 -28.18 16 24 Si 0.88 21.57 27.74 -169.99 -4.71 16.86 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 27 H -0.28 -6.26 6.52 56.52 0.37 -5.89 16 28 C -0.09 -1.37 2.20 -91.15 -0.20 -1.57 16 29 H 0.08 1.31 8.06 -51.93 -0.42 0.89 16 30 C 0.12 1.59 5.86 -2.62 -0.02 1.58 16 31 C -0.11 -1.09 9.36 -39.58 -0.37 -1.46 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 34 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 35 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 37 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 38 H 0.10 0.76 8.09 -51.93 -0.42 0.34 16 39 H 0.10 0.72 8.08 -51.93 -0.42 0.30 16 40 H 0.07 0.55 7.78 -51.93 -0.40 0.15 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.69 7.05 -51.93 -0.37 0.32 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.06 1.01 8.14 -51.92 -0.42 0.58 16 46 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.08 1.52 7.52 -51.93 -0.39 1.13 16 48 H 0.36 7.79 5.59 -40.82 -0.23 7.56 16 49 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 50 H 0.08 1.19 8.05 -51.93 -0.42 0.78 16 51 H 0.07 0.96 7.48 -51.93 -0.39 0.57 16 52 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 407.30 15.07 6.14 6.14 Total: -1.00 -33.24 407.30 -11.37 -44.61 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -8.95 Total: 6.98 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -3.88 Total: -12.34 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: -0.06 Total: -53.15 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.10 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.71 Total: 16.86 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.24 -11.37 -44.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992801086.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.719 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds