Wall clock time and date at job start Wed Apr 1 2020 02:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 110.77888 * 2 1 4 4 C 1.54326 * 110.72097 * 123.23493 * 2 1 3 5 5 N 1.47020 * 107.26863 * 140.55649 * 4 2 1 6 6 C 1.34775 * 125.64571 * 181.02547 * 5 4 2 7 7 O 1.21278 * 120.00535 * 359.97438 * 6 5 4 8 8 C 1.50709 * 119.99829 * 180.02562 * 6 5 4 9 9 C 1.53003 * 109.46839 * 185.27078 * 8 6 5 10 10 C 1.50704 * 115.54916 * 65.53587 * 9 8 6 11 11 C 1.38238 * 119.99659 * 209.57215 * 10 9 8 12 12 C 1.38237 * 119.99592 * 179.76440 * 11 10 9 13 13 C 1.38228 * 120.00176 * 0.49107 * 12 11 10 14 14 C 1.38240 * 120.00088 * 359.78887 * 13 12 11 15 15 C 1.38232 * 120.00146 * 29.85191 * 10 9 8 16 16 C 1.53000 * 117.49631 * 211.20353 * 9 8 6 17 17 C 1.52998 * 117.49715 * 279.86315 * 9 8 6 18 18 C 1.47419 * 108.70378 * 1.29001 * 5 4 2 19 19 C 1.55129 * 104.72558 * 335.55307 * 18 5 4 20 20 H 1.08998 * 111.19136 * 279.19115 * 19 18 5 21 21 N 1.46496 * 110.91035 * 155.27608 * 19 18 5 22 22 C 1.36939 * 120.00234 * 92.97341 * 21 19 18 23 23 H 1.07994 * 119.99950 * 0.02562 * 22 21 19 24 24 C 1.38809 * 119.99697 * 180.02562 * 22 21 19 25 25 N 1.31625 * 119.99602 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 120.00394 * 0.02562 * 24 22 21 27 27 H 1.48502 * 109.46931 * 89.99754 * 26 24 22 28 28 H 1.48501 * 109.47184 * 209.99734 * 26 24 22 29 29 H 1.48497 * 109.47078 * 329.99857 * 26 24 22 30 30 H 1.09003 * 109.47591 * 298.21515 * 1 2 3 31 31 H 1.09005 * 109.47250 * 58.21475 * 1 2 3 32 32 H 1.09002 * 109.47058 * 178.21541 * 1 2 3 33 33 H 1.09004 * 109.47165 * 181.78480 * 3 2 1 34 34 H 1.09002 * 109.47356 * 301.78563 * 3 2 1 35 35 H 1.09005 * 109.47076 * 61.78668 * 3 2 1 36 36 H 1.09005 * 109.87860 * 21.14724 * 4 2 1 37 37 H 1.08994 * 110.01131 * 260.04719 * 4 2 1 38 38 H 1.08995 * 109.46986 * 65.27221 * 8 6 5 39 39 H 1.09005 * 109.46743 * 305.26943 * 8 6 5 40 40 H 1.08003 * 119.99795 * 0.02562 * 11 10 9 41 41 H 1.07997 * 119.99409 * 180.25568 * 12 11 10 42 42 H 1.08001 * 120.00108 * 179.76913 * 13 12 11 43 43 H 1.08004 * 120.00114 * 179.97438 * 14 13 12 44 44 H 1.08001 * 120.00190 * 359.97438 * 15 10 9 45 45 H 1.08996 * 117.49881 * 215.00710 * 16 9 8 46 46 H 1.09001 * 117.49728 * 0.02562 * 16 9 8 47 47 H 1.08997 * 117.50169 * 359.97438 * 17 9 8 48 48 H 1.09003 * 117.49788 * 145.00146 * 17 9 8 49 49 H 1.09007 * 110.36549 * 94.48357 * 18 5 4 50 50 H 1.09005 * 110.36835 * 216.80188 * 18 5 4 51 51 H 0.97000 * 119.99797 * 272.97625 * 21 19 18 52 52 H 0.96998 * 119.99647 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0727 1.4305 0.0000 4 6 2.0760 -0.7911 1.2073 5 7 3.2445 -1.5506 0.7391 6 6 3.9922 -2.3835 1.4898 7 8 3.7198 -2.5556 2.6590 8 6 5.1678 -3.1000 0.8767 9 6 5.7600 -4.0741 1.8972 10 6 4.8665 -5.2203 2.2961 11 6 4.9767 -5.7762 3.5570 12 6 4.1538 -6.8243 3.9245 13 6 3.2278 -7.3233 3.0278 14 6 3.1216 -6.7713 1.7648 15 6 3.9408 -5.7196 1.3991 16 6 7.2647 -4.3426 1.8269 17 6 6.6899 -3.4979 2.9668 18 6 3.4665 -1.2455 -0.6860 19 6 2.0789 -0.7954 -1.2138 20 1 1.4452 -1.6535 -1.4375 21 7 2.2214 0.0696 -2.3875 22 6 2.1867 -0.4713 -3.6450 23 1 2.0540 -1.5356 -3.7715 24 6 2.3223 0.3483 -4.7570 25 7 2.2895 -0.1718 -5.9657 26 14 2.5526 2.1891 -4.5382 27 1 4.0019 2.4986 -4.4423 28 1 1.9700 2.9028 -5.7029 29 1 1.8692 2.6291 -3.2955 30 1 -0.3634 0.4859 0.9055 31 1 -0.3634 0.5413 -0.8736 32 1 -0.3633 -1.0272 -0.0320 33 1 3.1620 1.4058 -0.0320 34 1 1.6956 1.9623 -0.8735 35 1 1.7474 1.9425 0.9056 36 1 1.3129 -1.4758 1.5776 37 1 2.3735 -0.1043 1.9996 38 1 5.9258 -2.3724 0.5867 39 1 4.8381 -3.6519 -0.0036 40 1 5.7028 -5.3887 4.2563 41 1 4.2371 -7.2558 4.9110 42 1 2.5874 -8.1447 3.3136 43 1 2.3983 -7.1614 1.0640 44 1 3.8576 -5.2881 0.4126 45 1 7.6083 -5.3482 2.0692 46 1 7.8327 -3.8249 1.0540 47 1 6.8802 -2.4249 2.9433 48 1 6.6555 -3.9478 3.9591 49 1 4.1947 -0.4414 -0.7928 50 1 3.8031 -2.1361 -1.2167 51 1 2.3403 1.0256 -2.2739 52 1 2.3838 0.4010 -6.7428 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995901293.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:53 Heat of formation + Delta-G solvation = 33.342690 kcal Electronic energy + Delta-G solvation = -30673.710329 eV Core-core repulsion = 26832.191359 eV Total energy + Delta-G solvation = -3841.518970 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.49844 -39.59184 -38.05155 -36.85064 -34.25598 -33.27570 -31.26085 -31.15138 -30.53588 -29.56068 -27.93562 -27.20242 -25.94924 -23.79656 -23.26232 -22.93863 -22.01907 -21.41376 -19.94172 -19.01180 -18.62470 -17.71029 -17.29994 -16.67762 -15.97158 -15.53540 -15.17593 -14.94728 -14.68020 -14.52787 -14.32318 -13.91037 -13.80128 -13.68856 -13.46647 -13.22371 -12.96617 -12.84466 -12.65261 -12.32345 -12.25298 -12.11017 -11.88743 -11.68296 -11.65978 -11.43732 -11.38477 -11.17079 -11.07629 -11.04084 -10.64701 -10.62211 -10.59309 -10.36630 -10.20026 -10.00234 -9.66865 -9.58609 -9.06580 -8.91709 -8.53147 -8.35440 -7.42404 -5.88884 -3.26448 1.34116 1.40557 2.86670 3.11939 3.27558 3.30175 3.37433 3.57754 3.99987 4.41624 4.47475 4.52007 4.60420 4.63543 4.81709 4.93184 4.95810 4.99627 5.01706 5.08043 5.20475 5.35481 5.38715 5.40604 5.43697 5.47584 5.52464 5.57491 5.63962 5.68800 5.69885 5.72683 5.81688 5.84333 5.87858 5.95930 5.98528 6.02825 6.05100 6.07521 6.16775 6.19281 6.31786 6.43648 6.47438 6.48283 6.50587 6.57197 6.62702 6.71538 6.99396 7.77929 7.86280 8.29972 8.40892 9.06942 9.78963 9.97564 11.28849 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014072 B = 0.002887 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.254377 B = 9696.684936 C = 9912.198473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.091 4.091 3 C -0.138 4.138 4 C 0.123 3.877 5 N -0.616 5.616 6 C 0.527 3.473 7 O -0.538 6.538 8 C -0.101 4.101 9 C -0.071 4.071 10 C -0.021 4.021 11 C -0.116 4.116 12 C -0.119 4.119 13 C -0.131 4.131 14 C -0.115 4.115 15 C -0.115 4.115 16 C -0.165 4.165 17 C -0.158 4.158 18 C 0.072 3.928 19 C 0.187 3.813 20 H 0.077 0.923 21 N -0.734 5.734 22 C -0.252 4.252 23 H 0.092 0.908 24 C 0.011 3.989 25 N -0.929 5.929 26 Si 0.879 3.121 27 H -0.283 1.283 28 H -0.289 1.289 29 H -0.276 1.276 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.097 0.903 46 H 0.099 0.901 47 H 0.095 0.905 48 H 0.098 0.902 49 H 0.067 0.933 50 H 0.073 0.927 51 H 0.366 0.634 52 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.329 -8.034 18.100 20.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.093 4.093 3 C -0.195 4.195 4 C 0.000 4.000 5 N -0.350 5.350 6 C 0.316 3.684 7 O -0.415 6.415 8 C -0.140 4.140 9 C -0.072 4.072 10 C -0.021 4.021 11 C -0.134 4.134 12 C -0.137 4.137 13 C -0.149 4.149 14 C -0.133 4.133 15 C -0.133 4.133 16 C -0.202 4.202 17 C -0.194 4.194 18 C -0.053 4.053 19 C 0.075 3.925 20 H 0.095 0.905 21 N -0.377 5.377 22 C -0.382 4.382 23 H 0.110 0.890 24 C -0.186 4.186 25 N -0.575 5.575 26 Si 0.709 3.291 27 H -0.209 1.209 28 H -0.216 1.216 29 H -0.202 1.202 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.115 0.885 46 H 0.118 0.882 47 H 0.114 0.886 48 H 0.116 0.884 49 H 0.085 0.915 50 H 0.091 0.909 51 H 0.202 0.798 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.204 -8.314 18.520 20.957 hybrid contribution 0.169 1.434 -0.151 1.452 sum 5.372 -6.880 18.368 20.337 Atomic orbital electron populations 1.21691 0.93230 1.02004 1.01774 1.21908 0.96290 0.95730 0.95338 1.21769 1.00987 0.95042 1.01698 1.21957 0.87602 0.94184 0.96231 1.48497 1.29908 1.44294 1.12321 1.20140 0.83410 0.78798 0.86087 1.90682 1.70807 1.63772 1.16231 1.21200 0.96667 0.97755 0.98406 1.19716 0.90341 0.96432 1.00668 1.18854 0.95477 0.94102 0.93706 1.20959 1.00008 0.96644 0.95797 1.21055 0.96289 0.97041 0.99294 1.21085 0.99118 1.00482 0.94190 1.21108 0.99056 0.96594 0.96590 1.20972 0.95940 0.96887 0.99499 1.23190 0.93600 1.01667 1.01697 1.23033 1.02190 0.99726 0.94473 1.23460 1.02007 1.00842 0.79041 1.21340 0.92074 0.93352 0.85693 0.90518 1.42767 1.87824 1.05337 1.01745 1.19079 1.43098 0.94754 0.81245 0.89013 1.24660 1.01518 0.97329 0.95072 1.69694 1.56300 1.34513 0.97022 0.86651 0.78106 0.87177 0.77139 1.20933 1.21576 1.20204 0.93090 0.91534 0.92520 0.92519 0.91703 0.92808 0.91713 0.92033 0.88497 0.88370 0.86249 0.86399 0.86430 0.86158 0.86283 0.88455 0.88215 0.88611 0.88400 0.91453 0.90867 0.79834 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 8.49 37.16 0.32 -1.44 16 2 C -0.09 -1.34 0.85 -152.68 -0.13 -1.47 16 3 C -0.14 -1.96 7.55 37.16 0.28 -1.68 16 4 C 0.12 1.79 6.04 -3.06 -0.02 1.77 16 5 N -0.62 -9.21 3.32 -170.38 -0.57 -9.78 16 6 C 0.53 7.97 7.59 -10.98 -0.08 7.89 16 7 O -0.54 -9.60 15.71 5.56 0.09 -9.51 16 8 C -0.10 -1.23 4.19 -27.88 -0.12 -1.34 16 9 C -0.07 -0.83 1.48 -155.66 -0.23 -1.06 16 10 C -0.02 -0.27 4.60 -104.62 -0.48 -0.75 16 11 C -0.12 -1.38 9.35 -39.58 -0.37 -1.75 16 12 C -0.12 -1.29 10.05 -39.59 -0.40 -1.69 16 13 C -0.13 -1.42 10.05 -39.58 -0.40 -1.82 16 14 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 15 C -0.12 -1.46 9.24 -39.58 -0.37 -1.83 16 16 C -0.16 -1.53 9.89 -26.69 -0.26 -1.80 16 17 C -0.16 -1.64 9.48 -26.69 -0.25 -1.90 16 18 C 0.07 1.13 6.07 -2.41 -0.01 1.12 16 19 C 0.19 3.26 2.97 -65.67 -0.19 3.07 16 20 H 0.08 1.41 7.99 -51.93 -0.41 1.00 16 21 N -0.73 -15.63 4.95 -51.24 -0.25 -15.89 16 22 C -0.25 -6.55 10.44 -15.06 -0.16 -6.71 16 23 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 24 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 25 N -0.93 -27.77 13.97 55.49 0.78 -27.00 16 26 Si 0.88 20.82 27.74 -169.99 -4.71 16.10 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 29 H -0.28 -6.07 6.52 56.52 0.37 -5.70 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 33 H 0.06 0.82 7.42 -51.93 -0.39 0.43 16 34 H 0.06 1.02 6.75 -51.93 -0.35 0.67 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.95 7.82 -51.93 -0.41 0.54 16 37 H 0.06 0.88 7.85 -51.93 -0.41 0.47 16 38 H 0.10 1.05 8.09 -51.93 -0.42 0.63 16 39 H 0.10 1.13 6.26 -51.93 -0.33 0.81 16 40 H 0.12 1.24 5.95 -52.48 -0.31 0.93 16 41 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 44 H 0.12 1.45 6.56 -52.49 -0.34 1.10 16 45 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.10 0.97 6.11 -51.93 -0.32 0.65 16 49 H 0.07 1.07 7.70 -51.93 -0.40 0.68 16 50 H 0.07 1.12 7.32 -51.93 -0.38 0.74 16 51 H 0.37 7.71 3.31 -40.82 -0.14 7.57 16 52 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 406.94 15.07 6.13 6.13 Total: -1.00 -31.04 406.94 -10.33 -41.37 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -8.42 Total: 11.50 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: -3.37 Total: -12.94 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: -0.04 Total: -52.66 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.71 Total: 16.10 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.04 -10.33 -41.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995901293.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.715 kcal (2) G-P(sol) polarization free energy of solvation -31.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds