Wall clock time and date at job start Wed Apr 1 2020 02:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 110.88372 * 2 1 4 4 C 1.55129 * 111.19262 * 236.07012 * 2 1 3 5 5 N 1.47423 * 104.72147 * 279.18674 * 4 2 1 6 6 C 1.34769 * 125.64986 * 155.81832 * 5 4 2 7 7 O 1.21284 * 119.99983 * 355.25670 * 6 5 4 8 8 C 1.50700 * 120.00609 * 175.25654 * 6 5 4 9 9 C 1.53007 * 115.54715 * 67.59642 * 8 6 5 10 10 C 1.50697 * 109.46989 * 65.88724 * 9 8 6 11 11 C 1.38240 * 120.00210 * 84.85436 * 10 9 8 12 12 C 1.38228 * 120.00167 * 179.97438 * 11 10 9 13 13 C 1.38236 * 119.99971 * 359.97438 * 12 11 10 14 14 C 1.38234 * 119.99930 * 359.97438 * 13 12 11 15 15 C 1.38230 * 120.00137 * 0.09493 * 14 13 12 16 16 C 1.52998 * 117.50281 * 213.27231 * 8 6 5 17 17 C 1.53004 * 117.49996 * 281.93373 * 8 6 5 18 18 C 1.47020 * 108.70459 * 335.55977 * 5 4 2 19 19 C 1.54327 * 107.27054 * 1.28098 * 18 5 4 20 20 H 1.09004 * 110.72083 * 263.83138 * 19 18 5 21 21 N 1.46504 * 110.72096 * 140.55739 * 19 18 5 22 22 C 1.36937 * 119.99843 * 87.10486 * 21 19 18 23 23 H 1.08005 * 119.99818 * 4.66989 * 22 21 19 24 24 C 1.38809 * 120.00004 * 184.66401 * 22 21 19 25 25 N 1.31619 * 120.00061 * 179.97438 * 24 22 21 26 26 Si 1.86797 * 120.00174 * 0.02562 * 24 22 21 27 27 H 1.48494 * 109.47785 * 89.99378 * 26 24 22 28 28 H 1.48502 * 109.47428 * 209.99880 * 26 24 22 29 29 H 1.48508 * 109.46782 * 329.99303 * 26 24 22 30 30 H 1.08997 * 109.47201 * 296.12063 * 1 2 3 31 31 H 1.09002 * 109.47190 * 56.12096 * 1 2 3 32 32 H 1.08999 * 109.46659 * 176.11591 * 1 2 3 33 33 H 1.08993 * 109.47037 * 183.87993 * 3 2 1 34 34 H 1.08997 * 109.47188 * 303.88076 * 3 2 1 35 35 H 1.09003 * 109.47102 * 63.87831 * 3 2 1 36 36 H 1.09001 * 110.49235 * 160.34879 * 4 2 1 37 37 H 1.08994 * 110.34464 * 37.95435 * 4 2 1 38 38 H 1.08997 * 109.47038 * 305.88541 * 9 8 6 39 39 H 1.09003 * 109.46964 * 185.88600 * 9 8 6 40 40 H 1.08004 * 119.99754 * 359.97438 * 11 10 9 41 41 H 1.08001 * 119.99847 * 179.97438 * 12 11 10 42 42 H 1.08004 * 119.99700 * 179.72216 * 13 12 11 43 43 H 1.08006 * 119.99761 * 179.97438 * 14 13 12 44 44 H 1.08001 * 120.00043 * 179.97438 * 15 14 13 45 45 H 1.09005 * 117.49875 * 214.99924 * 16 8 6 46 46 H 1.09003 * 117.49595 * 0.02562 * 16 8 6 47 47 H 1.09005 * 117.49570 * 359.97042 * 17 8 6 48 48 H 1.08998 * 117.50143 * 144.96237 * 17 8 6 49 49 H 1.09001 * 109.88983 * 120.70208 * 18 5 4 50 50 H 1.09007 * 109.88265 * 241.87091 * 18 5 4 51 51 H 0.97002 * 120.00119 * 267.11158 * 21 19 18 52 52 H 0.97006 * 120.00262 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4296 0.0000 4 6 2.0908 -0.8073 -1.2001 5 7 2.0140 -2.2161 -0.7725 6 6 1.9473 -3.2834 -1.5927 7 8 1.8605 -3.1223 -2.7917 8 6 1.9805 -4.6770 -1.0203 9 6 0.7590 -5.0791 -0.1913 10 6 -0.4544 -5.1421 -1.0827 11 6 -0.7254 -6.2917 -1.8011 12 6 -1.8387 -6.3496 -2.6184 13 6 -2.6814 -5.2583 -2.7168 14 6 -2.4111 -4.1092 -1.9976 15 6 -1.2970 -4.0507 -1.1814 16 6 2.6593 -5.7667 -1.8526 17 6 3.3400 -5.2319 -0.5902 18 6 2.0285 -2.2643 0.6968 19 6 2.0861 -0.8074 1.2025 20 1 3.1133 -0.5154 1.4212 21 7 1.2342 -0.6339 2.3817 22 6 1.7336 -0.8900 3.6308 23 1 2.7755 -1.1466 3.7536 24 6 0.9008 -0.8196 4.7391 25 7 1.3807 -1.0662 5.9396 26 14 -0.9013 -0.3763 4.5266 27 1 -1.6946 -1.6143 4.3190 28 1 -1.3857 0.3238 5.7433 29 1 -1.0563 0.5143 3.3483 30 1 -0.3633 0.4524 0.9227 31 1 -0.3634 0.5729 -0.8532 32 1 -0.3632 -1.0253 -0.0696 33 1 3.1629 1.4035 -0.0695 34 1 1.6697 1.9732 -0.8531 35 1 1.7822 1.9303 0.9227 36 1 3.1253 -0.5270 -1.3985 37 1 1.4765 -0.6456 -2.0858 38 1 0.5946 -4.3420 0.5946 39 1 0.9309 -6.0572 0.2581 40 1 -0.0672 -7.1445 -1.7239 41 1 -2.0502 -7.2476 -3.1800 42 1 -3.5489 -5.3020 -3.3588 43 1 -3.0693 -3.2563 -2.0748 44 1 -1.0855 -3.1527 -0.6198 45 1 2.2356 -6.7701 -1.8096 46 1 3.0822 -5.4755 -2.8141 47 1 4.2104 -4.5890 -0.7217 48 1 3.3642 -5.8830 0.2837 49 1 1.1219 -2.7476 1.0610 50 1 2.9064 -2.8112 1.0411 51 1 0.3164 -0.3378 2.2776 52 1 0.7988 -1.0167 6.7142 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995903372.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:36 Heat of formation + Delta-G solvation = 31.009362 kcal Electronic energy + Delta-G solvation = -31659.505247 eV Core-core repulsion = 27817.885096 eV Total energy + Delta-G solvation = -3841.620151 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.57190 -39.24289 -38.34620 -36.51352 -34.25298 -33.18285 -32.32565 -31.17182 -30.87674 -27.99388 -27.62817 -27.19799 -26.43130 -23.93362 -22.85296 -22.67480 -22.33007 -21.50147 -20.72579 -19.09299 -18.39602 -17.67957 -16.97627 -16.33493 -15.99127 -15.62073 -15.22893 -15.10175 -14.88264 -14.56815 -14.20835 -13.90478 -13.56334 -13.49982 -13.39741 -13.21815 -13.00151 -12.71121 -12.61788 -12.43728 -12.35042 -12.06264 -11.98424 -11.70872 -11.60314 -11.43493 -11.41982 -11.29844 -11.05522 -10.96955 -10.66825 -10.60747 -10.52556 -10.34963 -10.06014 -9.96617 -9.66378 -9.54975 -9.04549 -8.89240 -8.68182 -8.33726 -7.42399 -5.88280 -3.25885 1.36285 1.42959 2.76077 3.11577 3.27395 3.30931 3.38019 3.64195 3.83936 4.46563 4.48129 4.58194 4.69964 4.80322 4.84736 4.91782 4.95242 4.99618 5.00647 5.08625 5.13827 5.35583 5.41458 5.43560 5.50637 5.55805 5.57511 5.62986 5.65072 5.68165 5.72917 5.76744 5.81507 5.85776 5.88738 5.96508 6.03584 6.04692 6.06838 6.11516 6.17790 6.24850 6.35933 6.43597 6.46238 6.49594 6.53440 6.56262 6.65829 6.73814 7.02436 7.76624 7.88189 8.30734 8.37679 9.08054 9.80023 9.98809 11.29470 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010004 B = 0.004162 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2798.219863 B = 6726.341056 C = 7331.856618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 C -0.130 4.130 4 C 0.118 3.882 5 N -0.607 5.607 6 C 0.567 3.433 7 O -0.547 6.547 8 C -0.143 4.143 9 C -0.047 4.047 10 C -0.073 4.073 11 C -0.111 4.111 12 C -0.122 4.122 13 C -0.126 4.126 14 C -0.117 4.117 15 C -0.108 4.108 16 C -0.144 4.144 17 C -0.156 4.156 18 C 0.075 3.925 19 C 0.186 3.814 20 H 0.074 0.926 21 N -0.736 5.736 22 C -0.251 4.251 23 H 0.092 0.908 24 C 0.012 3.988 25 N -0.928 5.928 26 Si 0.878 3.122 27 H -0.282 1.282 28 H -0.290 1.290 29 H -0.277 1.277 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.100 0.900 46 H 0.100 0.900 47 H 0.098 0.902 48 H 0.106 0.894 49 H 0.074 0.926 50 H 0.065 0.935 51 H 0.366 0.634 52 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.831 -6.942 -16.177 17.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.091 4.091 3 C -0.188 4.188 4 C -0.005 4.005 5 N -0.340 5.340 6 C 0.355 3.645 7 O -0.424 6.424 8 C -0.146 4.146 9 C -0.084 4.084 10 C -0.073 4.073 11 C -0.129 4.129 12 C -0.140 4.140 13 C -0.144 4.144 14 C -0.135 4.135 15 C -0.126 4.126 16 C -0.182 4.182 17 C -0.193 4.193 18 C -0.050 4.050 19 C 0.075 3.925 20 H 0.092 0.908 21 N -0.380 5.380 22 C -0.381 4.381 23 H 0.110 0.890 24 C -0.184 4.184 25 N -0.575 5.575 26 Si 0.708 3.292 27 H -0.209 1.209 28 H -0.216 1.216 29 H -0.204 1.204 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.102 0.898 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.119 0.881 46 H 0.119 0.881 47 H 0.116 0.884 48 H 0.124 0.876 49 H 0.092 0.908 50 H 0.083 0.917 51 H 0.202 0.798 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.749 -6.968 -16.608 18.096 hybrid contribution -1.357 0.295 0.112 1.393 sum -3.106 -6.674 -16.497 18.065 Atomic orbital electron populations 1.21695 0.94056 1.01786 1.01702 1.22046 0.96132 0.95641 0.95251 1.21657 1.00565 0.94427 1.02111 1.22321 1.00535 0.80209 0.97403 1.48396 1.71966 1.05666 1.07978 1.19054 0.75672 0.84301 0.85443 1.90661 1.50621 1.86143 1.15003 1.21259 0.95539 0.92866 1.04904 1.20231 0.89303 1.03129 0.95776 1.19754 0.95803 0.94032 0.97703 1.20963 0.97330 0.97624 0.96989 1.21070 0.95255 0.98502 0.99157 1.21089 0.99740 0.93728 0.99863 1.21104 0.97448 0.97985 0.96947 1.21091 0.94660 0.98026 0.98809 1.22981 1.02021 0.97144 0.96020 1.23123 0.93942 1.03000 0.99248 1.23299 1.01969 1.02177 0.77581 1.21190 0.95512 0.89900 0.85938 0.90840 1.42868 1.12038 1.81022 1.02053 1.19067 0.96434 1.40568 0.82018 0.89029 1.24648 0.97317 1.01229 0.95221 1.69689 1.35144 1.54992 0.97682 0.86679 0.87093 0.78420 0.77010 1.20894 1.21595 1.20369 0.91734 0.92815 0.92674 0.92488 0.92999 0.91449 0.91564 0.90841 0.89229 0.89805 0.86357 0.86361 0.86447 0.86324 0.86360 0.88146 0.88129 0.88398 0.87602 0.90813 0.91713 0.79757 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 7.94 37.16 0.29 -1.67 16 2 C -0.09 -1.29 0.87 -152.24 -0.13 -1.42 16 3 C -0.13 -1.68 8.68 37.16 0.32 -1.36 16 4 C 0.12 1.68 5.87 -2.41 -0.01 1.66 16 5 N -0.61 -9.16 3.31 -170.38 -0.56 -9.72 16 6 C 0.57 8.99 6.68 -10.99 -0.07 8.91 16 7 O -0.55 -10.34 16.98 5.55 0.09 -10.24 16 8 C -0.14 -1.86 1.23 -155.66 -0.19 -2.06 16 9 C -0.05 -0.60 5.12 -27.88 -0.14 -0.74 16 10 C -0.07 -0.97 4.86 -104.62 -0.51 -1.48 16 11 C -0.11 -1.32 9.72 -39.58 -0.38 -1.71 16 12 C -0.12 -1.37 10.05 -39.59 -0.40 -1.76 16 13 C -0.13 -1.45 10.05 -39.58 -0.40 -1.85 16 14 C -0.12 -1.49 10.05 -39.59 -0.40 -1.88 16 15 C -0.11 -1.52 9.56 -39.59 -0.38 -1.90 16 16 C -0.14 -1.62 9.78 -26.69 -0.26 -1.88 16 17 C -0.16 -1.72 9.92 -26.69 -0.26 -1.98 16 18 C 0.08 1.20 5.59 -3.06 -0.02 1.18 16 19 C 0.19 3.20 2.85 -66.09 -0.19 3.01 16 20 H 0.07 1.30 8.02 -51.93 -0.42 0.89 16 21 N -0.74 -15.56 4.87 -51.65 -0.25 -15.81 16 22 C -0.25 -6.47 10.46 -15.06 -0.16 -6.63 16 23 H 0.09 2.54 8.06 -52.48 -0.42 2.11 16 24 C 0.01 0.34 5.50 -17.43 -0.10 0.24 16 25 N -0.93 -27.66 13.97 55.49 0.78 -26.88 16 26 Si 0.88 20.91 27.78 -169.99 -4.72 16.18 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 H -0.28 -6.15 6.46 56.52 0.36 -5.79 16 30 H 0.06 1.03 6.35 -51.93 -0.33 0.70 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.83 7.58 -51.93 -0.39 0.44 16 33 H 0.06 0.68 8.07 -51.93 -0.42 0.27 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.88 7.99 -51.93 -0.41 0.47 16 37 H 0.07 1.07 7.91 -51.93 -0.41 0.66 16 38 H 0.09 1.25 5.45 -51.93 -0.28 0.96 16 39 H 0.08 0.90 8.06 -51.93 -0.42 0.48 16 40 H 0.12 1.16 7.81 -52.48 -0.41 0.75 16 41 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 43 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 44 H 0.12 1.72 7.73 -52.49 -0.41 1.32 16 45 H 0.10 0.94 7.90 -51.93 -0.41 0.53 16 46 H 0.10 1.23 8.03 -51.93 -0.42 0.81 16 47 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 48 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.07 1.25 5.86 -51.93 -0.30 0.95 16 50 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 51 H 0.37 7.72 3.11 -40.82 -0.13 7.59 16 52 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 411.64 15.07 6.20 6.20 Total: -1.00 -30.99 411.64 -10.41 -41.40 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: -8.56 Total: 12.20 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -3.39 Total: -13.32 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: -0.04 Total: -52.42 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.24 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.72 Total: 16.18 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -30.99 -10.41 -41.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995903372.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.411 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds