Wall clock time and date at job start Wed Apr 1 2020 02:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 110.30529 * 2 1 4 4 C 1.54390 * 110.34304 * 237.71639 * 2 1 3 5 5 N 1.48146 * 104.61962 * 264.99408 * 4 2 1 6 6 C 1.34777 * 127.83757 * 140.40892 * 5 4 2 7 7 O 1.21280 * 120.00298 * 5.02773 * 6 5 4 8 8 C 1.50699 * 119.99844 * 185.01926 * 6 5 4 9 9 C 1.52998 * 115.55381 * 279.81400 * 8 6 5 10 10 C 1.50696 * 109.46860 * 296.92441 * 9 8 6 11 11 C 1.38239 * 119.99653 * 274.98105 * 10 9 8 12 12 C 1.38239 * 119.99859 * 179.78967 * 11 10 9 13 13 C 1.38238 * 119.99764 * 0.44209 * 12 11 10 14 14 C 1.38239 * 120.00170 * 359.81087 * 13 12 11 15 15 C 1.38230 * 119.99811 * 359.97438 * 14 13 12 16 16 C 1.52998 * 117.49680 * 134.09927 * 8 6 5 17 17 C 1.52997 * 60.00461 * 252.51325 * 16 8 6 18 18 C 1.48145 * 104.32092 * 320.41410 * 5 4 2 19 19 C 1.54285 * 110.34583 * 122.17854 * 2 1 3 20 20 H 1.08996 * 110.34400 * 359.89503 * 19 2 1 21 21 N 1.46504 * 110.34236 * 237.74273 * 19 2 1 22 22 C 1.36930 * 120.00058 * 147.99807 * 21 19 2 23 23 H 1.08006 * 119.99803 * 354.92922 * 22 21 19 24 24 C 1.38807 * 120.00146 * 174.93264 * 22 21 19 25 25 N 1.31615 * 120.00124 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99908 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47085 * 90.00454 * 26 24 22 28 28 H 1.48506 * 109.46915 * 209.99633 * 26 24 22 29 29 H 1.48496 * 109.47583 * 329.99989 * 26 24 22 30 30 H 1.09002 * 109.46652 * 297.82074 * 1 2 3 31 31 H 1.09000 * 109.47443 * 57.82027 * 1 2 3 32 32 H 1.09002 * 109.46694 * 177.82044 * 1 2 3 33 33 H 1.08994 * 109.47380 * 182.17640 * 3 2 1 34 34 H 1.09002 * 109.47306 * 302.17916 * 3 2 1 35 35 H 1.09001 * 109.46704 * 62.17749 * 3 2 1 36 36 H 1.09009 * 110.40584 * 23.78071 * 4 2 1 37 37 H 1.09002 * 110.41209 * 146.08857 * 4 2 1 38 38 H 1.09000 * 109.46934 * 56.92314 * 9 8 6 39 39 H 1.08999 * 109.47057 * 176.92466 * 9 8 6 40 40 H 1.07994 * 120.00502 * 359.97438 * 11 10 9 41 41 H 1.07994 * 120.00302 * 180.27383 * 12 11 10 42 42 H 1.08001 * 119.99853 * 179.83374 * 13 12 11 43 43 H 1.07998 * 120.00241 * 179.97438 * 14 13 12 44 44 H 1.07997 * 119.99953 * 179.97438 * 15 14 13 45 45 H 1.09000 * 117.50127 * 0.02562 * 16 8 6 46 46 H 1.08998 * 117.49846 * 145.02366 * 16 8 6 47 47 H 1.08992 * 117.50027 * 252.51171 * 17 16 8 48 48 H 1.09005 * 117.49602 * 107.48478 * 17 16 8 49 49 H 1.09001 * 110.40956 * 280.79892 * 18 5 4 50 50 H 1.08998 * 110.40792 * 158.37196 * 18 5 4 51 51 H 0.96996 * 119.99510 * 328.27030 * 21 19 2 52 52 H 0.96998 * 120.00077 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0609 1.4349 0.0000 4 6 2.0667 -0.7732 -1.2238 5 7 2.3140 -2.1445 -0.7207 6 6 2.0774 -3.3118 -1.3516 7 8 1.6918 -3.3124 -2.5015 8 6 2.2920 -4.6162 -0.6282 9 6 3.7423 -5.0975 -0.5514 10 6 4.2574 -5.3638 -1.9423 11 6 4.0232 -6.5863 -2.5437 12 6 4.4919 -6.8292 -3.8213 13 6 5.2027 -5.8528 -4.4939 14 6 5.4414 -4.6322 -3.8905 15 6 4.9689 -4.3878 -2.6147 16 6 1.1996 -5.6804 -0.7514 17 6 1.3826 -4.9208 0.5641 18 6 2.8803 -1.9416 0.6331 19 6 2.0664 -0.7704 1.2244 20 1 1.2400 -1.1473 1.8268 21 7 2.9309 0.0943 2.0315 22 6 2.9895 -0.0718 3.3894 23 1 2.3386 -0.7838 3.8749 24 6 3.8855 0.6751 4.1419 25 7 4.6790 1.5425 3.5502 26 14 3.9649 0.4491 5.9945 27 1 4.9547 -0.6084 6.3222 28 1 4.3756 1.7260 6.6318 29 1 2.6277 0.0500 6.5024 30 1 -0.3633 0.4796 0.9089 31 1 -0.3634 0.5473 -0.8698 32 1 -0.3633 -1.0270 -0.0391 33 1 3.1501 1.4194 -0.0390 34 1 1.6738 1.9657 -0.8698 35 1 1.7372 1.9421 0.9089 36 1 1.3222 -0.7888 -2.0199 37 1 2.9938 -0.3243 -1.5804 38 1 4.3550 -4.3304 -0.0777 39 1 3.7901 -6.0146 0.0357 40 1 3.4715 -7.3506 -2.0166 41 1 4.3052 -7.7826 -4.2929 42 1 5.5713 -6.0435 -5.4910 43 1 5.9971 -3.8696 -4.4158 44 1 5.1557 -3.4344 -2.1431 45 1 0.3259 -5.4371 -1.3561 46 1 1.5141 -6.7236 -0.7780 47 1 1.8174 -5.4643 1.4028 48 1 0.6291 -4.1775 0.8250 49 1 3.9355 -1.6764 0.5679 50 1 2.7497 -2.8388 1.2381 51 1 3.4587 0.7869 1.6043 52 1 5.3053 2.0641 4.0760 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995903373.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:40 Heat of formation + Delta-G solvation = 30.578434 kcal Electronic energy + Delta-G solvation = -31120.168570 eV Core-core repulsion = 27278.529733 eV Total energy + Delta-G solvation = -3841.638837 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.43645 -39.22451 -38.22814 -36.50841 -34.09212 -33.05130 -32.36981 -30.88594 -30.82316 -27.68770 -27.46985 -26.91415 -26.33197 -23.89949 -22.85782 -22.68780 -22.33859 -21.65956 -21.02826 -18.68888 -18.17777 -17.35419 -16.93030 -16.31343 -15.80238 -15.63404 -15.18416 -14.93603 -14.90359 -14.42802 -14.05090 -13.81630 -13.69842 -13.46464 -13.36297 -13.19051 -12.93548 -12.65304 -12.55316 -12.32384 -12.19711 -11.83071 -11.72791 -11.62545 -11.55946 -11.38682 -11.19360 -11.03956 -10.98547 -10.93299 -10.60182 -10.52117 -10.43789 -10.20959 -10.06465 -9.87953 -9.72711 -9.45008 -9.02327 -8.90132 -8.69187 -8.34521 -7.06988 -5.86528 -3.16389 1.35017 1.41992 2.84518 3.14418 3.37490 3.43521 3.44799 3.62460 3.81978 4.48634 4.53417 4.64195 4.71307 4.81767 4.90518 4.94819 5.00241 5.10127 5.13002 5.15010 5.22329 5.42311 5.47144 5.49548 5.56540 5.61859 5.66042 5.69832 5.71594 5.76348 5.82900 5.83651 5.92326 5.99275 6.03502 6.03889 6.05252 6.08080 6.18650 6.27375 6.31642 6.35912 6.44554 6.46926 6.50722 6.53188 6.62619 6.63984 6.84682 6.95795 7.01025 7.62426 7.90524 8.31997 8.44664 9.43911 9.98825 10.34041 11.35489 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012248 B = 0.003227 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.599930 B = 8675.279961 C = 9190.825800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.091 4.091 3 C -0.127 4.127 4 C 0.117 3.883 5 N -0.613 5.613 6 C 0.571 3.429 7 O -0.545 6.545 8 C -0.141 4.141 9 C -0.039 4.039 10 C -0.073 4.073 11 C -0.110 4.110 12 C -0.122 4.122 13 C -0.126 4.126 14 C -0.117 4.117 15 C -0.106 4.106 16 C -0.145 4.145 17 C -0.159 4.159 18 C 0.077 3.923 19 C 0.177 3.823 20 H 0.065 0.935 21 N -0.713 5.713 22 C -0.246 4.246 23 H 0.070 0.930 24 C -0.008 4.008 25 N -0.929 5.929 26 Si 0.905 3.095 27 H -0.289 1.289 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.059 0.941 34 H 0.042 0.958 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.098 0.902 46 H 0.100 0.900 47 H 0.104 0.896 48 H 0.100 0.900 49 H 0.073 0.927 50 H 0.073 0.927 51 H 0.390 0.610 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.314 -13.328 -11.400 17.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.093 4.093 3 C -0.185 4.185 4 C -0.005 4.005 5 N -0.346 5.346 6 C 0.359 3.641 7 O -0.423 6.423 8 C -0.144 4.144 9 C -0.076 4.076 10 C -0.073 4.073 11 C -0.128 4.128 12 C -0.140 4.140 13 C -0.144 4.144 14 C -0.135 4.135 15 C -0.124 4.124 16 C -0.182 4.182 17 C -0.196 4.196 18 C -0.049 4.049 19 C 0.064 3.936 20 H 0.084 0.916 21 N -0.355 5.355 22 C -0.377 4.377 23 H 0.088 0.912 24 C -0.205 4.205 25 N -0.577 5.577 26 Si 0.736 3.264 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.207 1.207 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.117 0.883 46 H 0.119 0.881 47 H 0.123 0.877 48 H 0.119 0.881 49 H 0.091 0.909 50 H 0.091 0.909 51 H 0.227 0.773 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.528 -13.437 -11.856 18.264 hybrid contribution 0.421 0.179 0.921 1.028 sum -3.107 -13.258 -10.935 17.464 Atomic orbital electron populations 1.21777 0.94302 1.01039 1.01547 1.21830 0.95656 0.96319 0.95484 1.21654 1.01061 0.94152 1.01592 1.22407 1.00378 0.81167 0.96578 1.48938 1.62186 1.04886 1.18570 1.18968 0.76868 0.82830 0.85483 1.90668 1.47655 1.86949 1.17024 1.21238 0.93797 0.95464 1.03924 1.20091 0.91866 1.02026 0.93652 1.19725 0.97422 0.94092 0.96066 1.20945 0.99841 0.96662 0.95399 1.21069 0.98714 0.99173 0.95030 1.21090 0.99600 0.93975 0.99724 1.21100 1.00049 0.97090 0.95233 1.21049 0.97695 0.98623 0.95042 1.22971 0.99206 0.96341 0.99714 1.23155 1.01501 1.03189 0.91799 1.23656 0.99021 1.01051 0.81179 1.21117 0.92763 0.89380 0.90330 0.91650 1.42649 1.51022 1.37970 1.03902 1.19258 1.16155 1.19051 0.83242 0.91167 1.24740 0.98494 0.99231 0.97986 1.69651 1.25729 1.27665 1.34652 0.86227 0.77626 0.77000 0.85526 1.21660 1.21800 1.20732 0.92169 0.93168 0.93281 0.92157 0.93871 0.90929 0.90830 0.91488 0.89885 0.89861 0.86400 0.86378 0.86449 0.86308 0.86443 0.88327 0.88147 0.87716 0.88142 0.90869 0.90869 0.77326 0.93394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 8.24 37.16 0.31 -1.53 16 2 C -0.09 -1.42 1.03 -153.11 -0.16 -1.58 16 3 C -0.13 -2.04 7.17 37.16 0.27 -1.78 16 4 C 0.12 1.82 6.13 -2.41 -0.01 1.80 16 5 N -0.61 -9.63 3.32 -169.30 -0.56 -10.19 16 6 C 0.57 9.17 6.52 -10.99 -0.07 9.10 16 7 O -0.55 -10.52 17.30 5.56 0.10 -10.43 16 8 C -0.14 -1.81 1.07 -155.66 -0.17 -1.98 16 9 C -0.04 -0.46 5.23 -27.89 -0.15 -0.60 16 10 C -0.07 -0.93 4.81 -104.62 -0.50 -1.43 16 11 C -0.11 -1.27 9.72 -39.58 -0.38 -1.65 16 12 C -0.12 -1.33 10.05 -39.58 -0.40 -1.72 16 13 C -0.13 -1.40 10.05 -39.58 -0.40 -1.80 16 14 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 15 C -0.11 -1.43 9.50 -39.59 -0.38 -1.81 16 16 C -0.14 -1.61 9.88 -26.73 -0.26 -1.87 16 17 C -0.16 -1.76 8.81 -26.73 -0.24 -1.99 16 18 C 0.08 1.26 6.63 -2.41 -0.02 1.24 16 19 C 0.18 3.19 3.39 -66.53 -0.23 2.96 16 20 H 0.07 1.22 7.59 -51.93 -0.39 0.82 16 21 N -0.71 -16.04 4.39 -52.07 -0.23 -16.27 16 22 C -0.25 -6.26 9.94 -15.06 -0.15 -6.41 16 23 H 0.07 1.74 7.80 -52.48 -0.41 1.33 16 24 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 25 N -0.93 -26.38 13.06 55.49 0.72 -25.65 16 26 Si 0.91 21.23 29.55 -169.99 -5.02 16.21 16 27 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 1.04 6.88 -51.93 -0.36 0.68 16 34 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 1.32 7.82 -51.93 -0.41 0.91 16 36 H 0.07 1.15 7.65 -51.92 -0.40 0.75 16 37 H 0.07 1.03 7.84 -51.93 -0.41 0.62 16 38 H 0.08 1.03 8.03 -51.93 -0.42 0.61 16 39 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 40 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 41 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 43 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 44 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 45 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 47 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 49 H 0.07 1.32 8.06 -51.93 -0.42 0.90 16 50 H 0.07 1.14 6.44 -51.93 -0.33 0.80 16 51 H 0.39 9.30 5.43 -40.82 -0.22 9.08 16 52 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 417.98 15.07 6.30 6.30 Total: -1.00 -30.07 417.98 -10.93 -41.01 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -8.81 Total: 12.23 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -3.43 Total: -13.21 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: -0.06 Total: -52.11 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.10 Total: -10.43 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -30.07 -10.93 -41.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995903373.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.585 kcal (2) G-P(sol) polarization free energy of solvation -30.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds