Wall clock time and date at job start Wed Apr 1 2020 02:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 110.79761 * 2 1 4 4 C 1.54934 * 110.73572 * 236.70971 * 2 1 3 5 5 N 1.48116 * 103.25771 * 279.03659 * 4 2 1 6 6 C 1.34778 * 127.03652 * 140.74720 * 5 4 2 7 7 O 1.21273 * 120.00029 * 354.75965 * 6 5 4 8 8 C 1.50700 * 119.99860 * 174.76139 * 6 5 4 9 9 H 1.09003 * 109.25706 * 336.40963 * 8 6 5 10 10 C 1.52735 * 109.25519 * 95.88572 * 8 6 5 11 11 C 1.53332 * 108.36761 * 171.38288 * 10 8 6 12 12 C 1.52730 * 108.38704 * 290.08007 * 11 10 8 13 13 C 1.50632 * 110.59130 * 51.02850 * 12 11 10 14 14 C 1.38916 * 117.74976 * 162.54599 * 13 12 11 15 15 C 1.37934 * 120.54739 * 179.75579 * 14 13 12 16 16 C 1.38263 * 119.77066 * 359.97438 * 15 14 13 17 17 C 1.37929 * 119.77119 * 0.12277 * 16 15 14 18 18 C 1.37667 * 122.57208 * 342.48588 * 13 12 11 19 19 C 1.47493 * 105.93042 * 320.71257 * 5 4 2 20 20 C 1.53997 * 107.08363 * 25.44554 * 19 5 4 21 21 H 1.09003 * 110.33159 * 117.58838 * 20 19 5 22 22 N 1.46500 * 110.32734 * 239.70091 * 20 19 5 23 23 C 1.36942 * 119.99957 * 272.16456 * 22 20 19 24 24 H 1.07999 * 119.99612 * 0.02562 * 23 22 20 25 25 C 1.38813 * 119.99816 * 179.97438 * 23 22 20 26 26 N 1.31616 * 120.00037 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 119.99696 * 179.97438 * 25 23 22 28 28 H 1.48506 * 109.47389 * 89.99681 * 27 25 23 29 29 H 1.48496 * 109.47490 * 209.99980 * 27 25 23 30 30 H 1.48502 * 109.47243 * 330.00318 * 27 25 23 31 31 H 1.09004 * 109.47188 * 296.70686 * 1 2 3 32 32 H 1.08997 * 109.47231 * 56.71290 * 1 2 3 33 33 H 1.08998 * 109.46887 * 176.71055 * 1 2 3 34 34 H 1.08995 * 109.47149 * 183.29316 * 3 2 1 35 35 H 1.09002 * 109.47362 * 303.29305 * 3 2 1 36 36 H 1.08997 * 109.47550 * 63.28904 * 3 2 1 37 37 H 1.09006 * 110.66286 * 160.60011 * 4 2 1 38 38 H 1.08998 * 110.81253 * 37.54788 * 4 2 1 39 39 H 1.08999 * 109.68584 * 291.09851 * 10 8 6 40 40 H 1.08995 * 109.68947 * 51.62894 * 10 8 6 41 41 H 1.08997 * 109.68522 * 49.80341 * 11 10 8 42 42 H 1.09007 * 109.68387 * 170.35532 * 11 10 8 43 43 H 1.08992 * 109.25875 * 171.32034 * 12 11 10 44 44 H 1.09000 * 109.25076 * 290.74773 * 12 11 10 45 45 H 1.07998 * 119.72551 * 359.75414 * 14 13 12 46 46 H 1.08004 * 120.11185 * 179.97438 * 15 14 13 47 47 H 1.08006 * 120.11353 * 180.09911 * 16 15 14 48 48 H 1.07999 * 119.72726 * 179.97438 * 17 16 15 49 49 H 1.09001 * 109.91375 * 266.08438 * 19 5 4 50 50 H 1.08999 * 109.91011 * 144.80666 * 19 5 4 51 51 H 0.97002 * 120.00171 * 92.16559 * 22 20 19 52 52 H 0.97002 * 119.99628 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0733 1.4303 0.0000 4 6 2.0786 -0.7953 -1.2112 5 7 1.9871 -2.2038 -0.7623 6 6 1.6234 -3.2698 -1.5025 7 8 1.2362 -3.1137 -2.6411 8 6 1.6979 -4.6557 -0.9152 9 1 2.4231 -4.6628 -0.1016 10 6 0.3256 -5.0462 -0.3702 11 6 0.3655 -6.5277 0.0230 12 6 0.4530 -7.3626 -1.2529 13 6 1.5704 -6.8682 -2.1340 14 6 2.0290 -7.7163 -3.1341 15 6 3.0464 -7.3202 -3.9771 16 6 3.6146 -6.0688 -3.8267 17 6 3.1620 -5.2260 -2.8330 18 6 2.1392 -5.6239 -1.9815 19 6 2.3763 -2.2014 0.6604 20 6 2.0776 -0.7937 1.2087 21 1 1.3279 -0.8460 1.9983 22 7 3.3048 -0.1732 1.7137 23 6 3.6939 -0.3814 3.0101 24 1 3.0962 -1.0032 3.6600 25 6 4.8571 0.2061 3.4885 26 7 5.5862 0.9628 2.6959 27 14 5.3874 -0.0772 5.2570 28 1 6.2602 -1.2767 5.3260 29 1 6.1362 1.1085 5.7454 30 1 4.1874 -0.2889 6.1058 31 1 -0.3634 0.4619 0.9181 32 1 -0.3633 0.5640 -0.8590 33 1 -0.3633 -1.0260 -0.0590 34 1 3.1614 1.4057 -0.0590 35 1 1.6750 1.9703 -0.8590 36 1 1.7705 1.9340 0.9179 37 1 3.1145 -0.5226 -1.4131 38 1 1.4603 -0.6321 -2.0938 39 1 0.0921 -4.4402 0.5052 40 1 -0.4324 -4.8899 -1.1377 41 1 1.2386 -6.7185 0.6470 42 1 -0.5410 -6.7870 0.5699 43 1 0.6372 -8.4040 -0.9892 44 1 -0.4901 -7.2911 -1.7946 45 1 1.5854 -8.6938 -3.2524 46 1 3.3978 -7.9854 -4.7520 47 1 4.4105 -5.7524 -4.4848 48 1 3.6067 -4.2488 -2.7159 49 1 3.4403 -2.4184 0.7546 50 1 1.7936 -2.9437 1.2059 51 1 3.8418 0.3851 1.1299 52 1 6.3988 1.3736 3.0304 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995960395.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:51 Heat of formation + Delta-G solvation = -6.369995 kcal Electronic energy + Delta-G solvation = -31062.938148 eV Core-core repulsion = 27219.697106 eV Total energy + Delta-G solvation = -3843.241041 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.77456 -39.47333 -37.80405 -36.02525 -34.04785 -33.24293 -32.50891 -30.82294 -30.31109 -29.18730 -27.77848 -26.81622 -26.32463 -24.16033 -23.73743 -22.81771 -22.42149 -21.60053 -19.67525 -18.96463 -18.48355 -17.33922 -16.84929 -16.54745 -15.77453 -15.43663 -15.28523 -15.03084 -14.75038 -14.32646 -14.10008 -13.86888 -13.77561 -13.49291 -13.38084 -13.10882 -12.92891 -12.80513 -12.49695 -12.44638 -12.16334 -12.02722 -11.78494 -11.70912 -11.60701 -11.49058 -11.35130 -11.18157 -10.97398 -10.93615 -10.76481 -10.56587 -10.48405 -10.40925 -10.24771 -9.85566 -9.69578 -9.50942 -9.02900 -8.75496 -8.58365 -8.30132 -7.09756 -5.86879 -3.16793 1.32782 1.38183 2.81189 3.22087 3.37498 3.43340 3.44793 3.76209 4.41590 4.50397 4.51627 4.63719 4.83039 4.87565 4.92771 5.02054 5.08464 5.09536 5.15949 5.24820 5.28617 5.35623 5.40086 5.45760 5.54844 5.62764 5.64258 5.68787 5.72352 5.77525 5.81013 5.84981 5.91123 5.96573 5.99274 6.08564 6.09381 6.13798 6.15710 6.27912 6.28256 6.37933 6.42950 6.45457 6.49419 6.52841 6.61064 6.62561 6.82221 6.94816 6.98878 7.61534 7.87308 8.31218 8.40223 9.43456 9.98201 10.32958 11.35242 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012242 B = 0.003136 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.706900 B = 8925.467216 C = 9589.331522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.088 4.088 3 C -0.124 4.124 4 C 0.116 3.884 5 N -0.613 5.613 6 C 0.537 3.463 7 O -0.546 6.546 8 C -0.064 4.064 9 H 0.101 0.899 10 C -0.107 4.107 11 C -0.117 4.117 12 C -0.081 4.081 13 C -0.071 4.071 14 C -0.126 4.126 15 C -0.120 4.120 16 C -0.124 4.124 17 C -0.096 4.096 18 C -0.055 4.055 19 C 0.072 3.928 20 C 0.177 3.823 21 H 0.065 0.935 22 N -0.714 5.714 23 C -0.247 4.247 24 H 0.071 0.929 25 C -0.008 4.008 26 N -0.929 5.929 27 Si 0.906 3.094 28 H -0.290 1.290 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.043 0.957 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.119 0.881 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.116 0.884 49 H 0.077 0.923 50 H 0.061 0.939 51 H 0.388 0.612 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.939 -13.638 -9.090 19.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.090 4.090 3 C -0.182 4.182 4 C -0.006 4.006 5 N -0.346 5.346 6 C 0.325 3.675 7 O -0.424 6.424 8 C -0.085 4.085 9 H 0.119 0.881 10 C -0.145 4.145 11 C -0.155 4.155 12 C -0.117 4.117 13 C -0.072 4.072 14 C -0.144 4.144 15 C -0.138 4.138 16 C -0.142 4.142 17 C -0.114 4.114 18 C -0.055 4.055 19 C -0.054 4.054 20 C 0.065 3.935 21 H 0.083 0.917 22 N -0.356 5.356 23 C -0.378 4.378 24 H 0.089 0.911 25 C -0.204 4.204 26 N -0.577 5.577 27 Si 0.737 3.263 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.207 1.207 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.137 0.863 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.134 0.866 49 H 0.096 0.904 50 H 0.079 0.921 51 H 0.225 0.775 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.115 -13.646 -9.545 19.484 hybrid contribution 0.807 0.034 0.799 1.136 sum -9.308 -13.613 -8.746 18.666 Atomic orbital electron populations 1.21694 0.94140 1.01279 1.01450 1.21919 0.95427 0.96133 0.95490 1.21585 1.01695 0.93757 1.01200 1.22531 1.00924 0.79890 0.97262 1.48862 1.65865 1.07229 1.12601 1.19977 0.77034 0.85145 0.85355 1.90679 1.47261 1.85971 1.18468 1.20174 0.99880 0.90939 0.97505 0.88077 1.21476 0.94925 0.96785 1.01290 1.21545 1.02641 0.94243 0.97043 1.20485 0.96715 0.99441 0.95100 1.19526 0.97258 0.93507 0.96864 1.21059 0.97946 0.99484 0.95931 1.21028 0.97005 0.96459 0.99354 1.21021 1.00398 0.94338 0.98428 1.21135 0.96145 0.99228 0.94919 1.19065 0.96300 0.93631 0.96529 1.23504 1.00813 1.01750 0.79329 1.21067 0.90394 0.88938 0.93096 0.91669 1.42625 1.23840 1.57770 1.11403 1.19238 1.05136 1.25374 0.88012 0.91081 1.24734 0.97759 0.99906 0.98043 1.69650 1.16713 1.36254 1.35083 0.86216 0.78349 0.77165 0.84573 1.21685 1.21778 1.20707 0.92380 0.92990 0.93059 0.91456 0.93785 0.91724 0.91055 0.90586 0.90696 0.90854 0.91194 0.90892 0.90719 0.90585 0.86306 0.86265 0.86182 0.86583 0.90437 0.92085 0.77492 0.93376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 8.49 37.16 0.32 -1.44 16 2 C -0.09 -1.37 0.93 -152.64 -0.14 -1.51 16 3 C -0.12 -2.00 7.84 37.16 0.29 -1.70 16 4 C 0.12 1.85 6.00 -2.13 -0.01 1.84 16 5 N -0.61 -9.75 3.19 -169.77 -0.54 -10.29 16 6 C 0.54 8.65 5.71 -10.98 -0.06 8.59 16 7 O -0.55 -10.40 16.06 5.56 0.09 -10.31 16 8 C -0.06 -0.86 2.09 -93.09 -0.19 -1.06 16 9 H 0.10 1.33 7.13 -51.93 -0.37 0.96 16 10 C -0.11 -1.20 5.24 -26.70 -0.14 -1.34 16 11 C -0.12 -1.07 5.98 -26.70 -0.16 -1.23 16 12 C -0.08 -0.75 5.67 -28.05 -0.16 -0.90 16 13 C -0.07 -0.85 5.74 -104.61 -0.60 -1.45 16 14 C -0.13 -1.37 9.61 -39.44 -0.38 -1.75 16 15 C -0.12 -1.33 10.05 -39.68 -0.40 -1.72 16 16 C -0.12 -1.54 10.05 -39.69 -0.40 -1.94 16 17 C -0.10 -1.38 8.53 -39.45 -0.34 -1.72 16 18 C -0.05 -0.76 5.11 -104.61 -0.53 -1.29 16 19 C 0.07 1.18 6.06 -2.98 -0.02 1.16 16 20 C 0.18 3.18 3.10 -66.56 -0.21 2.98 16 21 H 0.07 1.19 7.82 -51.93 -0.41 0.78 16 22 N -0.71 -16.11 4.48 -52.10 -0.23 -16.35 16 23 C -0.25 -6.29 9.96 -15.06 -0.15 -6.44 16 24 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 25 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 26 N -0.93 -26.52 13.06 55.49 0.72 -25.79 16 27 Si 0.91 21.30 29.55 -169.99 -5.02 16.28 16 28 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 29 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 30 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.71 8.07 -51.93 -0.42 0.29 16 34 H 0.07 1.21 6.25 -51.93 -0.32 0.88 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.07 1.18 8.02 -51.93 -0.42 0.77 16 38 H 0.08 1.21 7.73 -51.93 -0.40 0.81 16 39 H 0.07 0.80 8.04 -51.93 -0.42 0.38 16 40 H 0.07 0.89 8.08 -51.93 -0.42 0.48 16 41 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 42 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 43 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 44 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.12 0.99 8.05 -52.49 -0.42 0.57 16 46 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 47 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 48 H 0.12 1.77 7.25 -52.49 -0.38 1.39 16 49 H 0.08 1.44 7.92 -51.93 -0.41 1.03 16 50 H 0.06 0.89 7.55 -51.93 -0.39 0.50 16 51 H 0.39 9.35 5.58 -40.82 -0.23 9.12 16 52 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 404.14 15.07 6.09 6.09 Total: -1.00 -29.91 404.14 -11.06 -40.97 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -8.78 Total: 10.65 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -3.38 Total: -11.25 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: -0.05 Total: -52.43 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.31 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -29.91 -11.06 -40.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995960395.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.596 kcal (2) G-P(sol) polarization free energy of solvation -29.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds