Wall clock time and date at job start Wed Apr 1 2020 02:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 110.79761 * 2 1 4 4 C 1.54934 * 110.73572 * 236.70971 * 2 1 3 5 5 N 1.48116 * 103.25771 * 279.03659 * 4 2 1 6 6 C 1.34778 * 127.03652 * 140.74720 * 5 4 2 7 7 O 1.21273 * 120.00029 * 354.75965 * 6 5 4 8 8 C 1.50700 * 119.99860 * 174.76139 * 6 5 4 9 9 H 1.09003 * 109.25706 * 336.40963 * 8 6 5 10 10 C 1.52735 * 109.25519 * 95.88572 * 8 6 5 11 11 C 1.53332 * 108.36761 * 171.38288 * 10 8 6 12 12 C 1.52730 * 108.38704 * 290.08007 * 11 10 8 13 13 C 1.50632 * 110.59130 * 51.02850 * 12 11 10 14 14 C 1.38916 * 117.74976 * 162.54599 * 13 12 11 15 15 C 1.37934 * 120.54739 * 179.75579 * 14 13 12 16 16 C 1.38263 * 119.77066 * 359.97438 * 15 14 13 17 17 C 1.37929 * 119.77119 * 0.12277 * 16 15 14 18 18 C 1.37667 * 122.57208 * 342.48588 * 13 12 11 19 19 C 1.47493 * 105.93042 * 320.71257 * 5 4 2 20 20 C 1.53997 * 107.08363 * 25.44554 * 19 5 4 21 21 H 1.09003 * 110.33159 * 117.58838 * 20 19 5 22 22 N 1.46500 * 110.32734 * 239.70091 * 20 19 5 23 23 C 1.36942 * 119.99957 * 272.16456 * 22 20 19 24 24 H 1.07999 * 119.99612 * 0.02562 * 23 22 20 25 25 C 1.38813 * 119.99816 * 179.97438 * 23 22 20 26 26 N 1.31616 * 120.00037 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 119.99696 * 179.97438 * 25 23 22 28 28 H 1.48506 * 109.47389 * 89.99681 * 27 25 23 29 29 H 1.48496 * 109.47490 * 209.99980 * 27 25 23 30 30 H 1.48502 * 109.47243 * 330.00318 * 27 25 23 31 31 H 1.09004 * 109.47188 * 296.70686 * 1 2 3 32 32 H 1.08997 * 109.47231 * 56.71290 * 1 2 3 33 33 H 1.08998 * 109.46887 * 176.71055 * 1 2 3 34 34 H 1.08995 * 109.47149 * 183.29316 * 3 2 1 35 35 H 1.09002 * 109.47362 * 303.29305 * 3 2 1 36 36 H 1.08997 * 109.47550 * 63.28904 * 3 2 1 37 37 H 1.09006 * 110.66286 * 160.60011 * 4 2 1 38 38 H 1.08998 * 110.81253 * 37.54788 * 4 2 1 39 39 H 1.08999 * 109.68584 * 291.09851 * 10 8 6 40 40 H 1.08995 * 109.68947 * 51.62894 * 10 8 6 41 41 H 1.08997 * 109.68522 * 49.80341 * 11 10 8 42 42 H 1.09007 * 109.68387 * 170.35532 * 11 10 8 43 43 H 1.08992 * 109.25875 * 171.32034 * 12 11 10 44 44 H 1.09000 * 109.25076 * 290.74773 * 12 11 10 45 45 H 1.07998 * 119.72551 * 359.75414 * 14 13 12 46 46 H 1.08004 * 120.11185 * 179.97438 * 15 14 13 47 47 H 1.08006 * 120.11353 * 180.09911 * 16 15 14 48 48 H 1.07999 * 119.72726 * 179.97438 * 17 16 15 49 49 H 1.09001 * 109.91375 * 266.08438 * 19 5 4 50 50 H 1.08999 * 109.91011 * 144.80666 * 19 5 4 51 51 H 0.97002 * 120.00171 * 92.16559 * 22 20 19 52 52 H 0.97002 * 119.99628 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0733 1.4303 0.0000 4 6 2.0786 -0.7953 -1.2112 5 7 1.9871 -2.2038 -0.7623 6 6 1.6234 -3.2698 -1.5025 7 8 1.2362 -3.1137 -2.6411 8 6 1.6979 -4.6557 -0.9152 9 1 2.4231 -4.6628 -0.1016 10 6 0.3256 -5.0462 -0.3702 11 6 0.3655 -6.5277 0.0230 12 6 0.4530 -7.3626 -1.2529 13 6 1.5704 -6.8682 -2.1340 14 6 2.0290 -7.7163 -3.1341 15 6 3.0464 -7.3202 -3.9771 16 6 3.6146 -6.0688 -3.8267 17 6 3.1620 -5.2260 -2.8330 18 6 2.1392 -5.6239 -1.9815 19 6 2.3763 -2.2014 0.6604 20 6 2.0776 -0.7937 1.2087 21 1 1.3279 -0.8460 1.9983 22 7 3.3048 -0.1732 1.7137 23 6 3.6939 -0.3814 3.0101 24 1 3.0962 -1.0032 3.6600 25 6 4.8571 0.2061 3.4885 26 7 5.5862 0.9628 2.6959 27 14 5.3874 -0.0772 5.2570 28 1 6.2602 -1.2767 5.3260 29 1 6.1362 1.1085 5.7454 30 1 4.1874 -0.2889 6.1058 31 1 -0.3634 0.4619 0.9181 32 1 -0.3633 0.5640 -0.8590 33 1 -0.3633 -1.0260 -0.0590 34 1 3.1614 1.4057 -0.0590 35 1 1.6750 1.9703 -0.8590 36 1 1.7705 1.9340 0.9179 37 1 3.1145 -0.5226 -1.4131 38 1 1.4603 -0.6321 -2.0938 39 1 0.0921 -4.4402 0.5052 40 1 -0.4324 -4.8899 -1.1377 41 1 1.2386 -6.7185 0.6470 42 1 -0.5410 -6.7870 0.5699 43 1 0.6372 -8.4040 -0.9892 44 1 -0.4901 -7.2911 -1.7946 45 1 1.5854 -8.6938 -3.2524 46 1 3.3978 -7.9854 -4.7520 47 1 4.4105 -5.7524 -4.4848 48 1 3.6067 -4.2488 -2.7159 49 1 3.4403 -2.4184 0.7546 50 1 1.7936 -2.9437 1.2059 51 1 3.8418 0.3851 1.1299 52 1 6.3988 1.3736 3.0304 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995960395.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:50 Heat of formation + Delta-G solvation = -20.769831 kcal Electronic energy + Delta-G solvation = -31063.562571 eV Core-core repulsion = 27219.697106 eV Total energy + Delta-G solvation = -3843.865465 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.90443 -40.65375 -39.10912 -36.91604 -35.78591 -34.62538 -33.50249 -32.63085 -31.18006 -30.12752 -29.30352 -28.14205 -27.56396 -25.74141 -24.94324 -23.66774 -23.48750 -22.99252 -20.64317 -20.25694 -19.77213 -19.13734 -18.16402 -17.53245 -17.10037 -16.57940 -16.28084 -16.26151 -16.18066 -15.73861 -15.48357 -15.22753 -14.78023 -14.66392 -14.50975 -14.28592 -14.20079 -13.90965 -13.82814 -13.40852 -13.32748 -13.20620 -13.10813 -13.00443 -12.83192 -12.74777 -12.65413 -12.54970 -12.33648 -12.15479 -12.04242 -11.98992 -11.83747 -11.64413 -11.43037 -11.30161 -11.27815 -10.96314 -10.75685 -9.71964 -9.66411 -9.49511 -9.01071 -7.91004 -5.19293 0.39864 0.45156 1.50977 1.51612 1.53274 1.59649 1.95028 2.58952 2.81729 3.33319 3.41521 3.52181 3.67882 3.76644 3.79068 3.92307 3.97731 4.05140 4.05546 4.13351 4.17284 4.28967 4.31881 4.36598 4.40617 4.51594 4.57411 4.58482 4.62955 4.73305 4.75258 4.85056 4.86830 4.89359 4.96968 4.98162 5.00975 5.06927 5.08215 5.10499 5.12764 5.15391 5.27405 5.33607 5.38414 5.41096 5.53782 5.56966 5.59256 5.61113 5.68790 6.10096 6.30544 6.54741 7.09099 7.38600 8.11986 8.35692 9.32150 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012242 B = 0.003136 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.706900 B = 8925.467216 C = 9589.331522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.078 4.078 3 C -0.117 4.117 4 C 0.116 3.884 5 N -0.611 5.611 6 C 0.538 3.462 7 O -0.577 6.577 8 C -0.059 4.059 9 H 0.100 0.900 10 C -0.104 4.104 11 C -0.113 4.113 12 C -0.080 4.080 13 C -0.078 4.078 14 C -0.127 4.127 15 C -0.121 4.121 16 C -0.137 4.137 17 C -0.125 4.125 18 C -0.078 4.078 19 C 0.085 3.915 20 C 0.172 3.828 21 H 0.071 0.929 22 N -0.724 5.724 23 C -0.236 4.236 24 H 0.081 0.919 25 C -0.071 4.071 26 N -0.968 5.968 27 Si 0.966 3.034 28 H -0.291 1.291 29 H -0.302 1.302 30 H -0.267 1.267 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.041 0.959 35 H 0.068 0.932 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.084 0.916 45 H 0.151 0.849 46 H 0.148 0.852 47 H 0.130 0.870 48 H 0.091 0.909 49 H 0.053 0.947 50 H 0.086 0.914 51 H 0.378 0.622 52 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.209 -16.271 -8.747 22.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.080 4.080 3 C -0.175 4.175 4 C -0.006 4.006 5 N -0.343 5.343 6 C 0.327 3.673 7 O -0.457 6.457 8 C -0.080 4.080 9 H 0.118 0.882 10 C -0.142 4.142 11 C -0.150 4.150 12 C -0.116 4.116 13 C -0.078 4.078 14 C -0.144 4.144 15 C -0.138 4.138 16 C -0.155 4.155 17 C -0.143 4.143 18 C -0.078 4.078 19 C -0.041 4.041 20 C 0.061 3.939 21 H 0.089 0.911 22 N -0.365 5.365 23 C -0.368 4.368 24 H 0.099 0.901 25 C -0.263 4.263 26 N -0.618 5.618 27 Si 0.796 3.204 28 H -0.218 1.218 29 H -0.229 1.229 30 H -0.192 1.192 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.115 0.885 43 H 0.117 0.883 44 H 0.103 0.897 45 H 0.169 0.831 46 H 0.166 0.834 47 H 0.148 0.852 48 H 0.109 0.891 49 H 0.071 0.929 50 H 0.104 0.896 51 H 0.213 0.787 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -12.432 -16.311 -9.195 22.476 hybrid contribution 1.478 0.809 0.571 1.780 sum -10.954 -15.502 -8.624 20.849 Atomic orbital electron populations 1.21638 0.91973 1.01704 1.02533 1.21859 0.96926 0.95323 0.93863 1.21492 1.00075 0.94290 1.01674 1.22491 1.00250 0.80244 0.97629 1.48874 1.65716 1.07348 1.12394 1.20512 0.75879 0.86008 0.84851 1.90652 1.48757 1.86502 1.19803 1.20197 1.01383 0.89087 0.97379 0.88234 1.21505 0.92881 0.98781 1.01033 1.21557 1.03844 0.92309 0.97278 1.20576 0.95897 1.00559 0.94615 1.19925 0.97644 0.92775 0.97506 1.21491 0.97427 1.00534 0.94980 1.21405 0.96607 0.95984 0.99837 1.21252 1.01004 0.95055 0.98221 1.21140 0.97504 0.98896 0.96792 1.19219 0.96876 0.94797 0.96945 1.23186 0.99762 1.01299 0.79833 1.21264 0.88754 0.89683 0.94152 0.91114 1.42771 1.25142 1.58043 1.10582 1.19638 1.04472 1.23608 0.89087 0.90123 1.25451 0.98519 1.00829 1.01500 1.69805 1.17179 1.38207 1.36644 0.85250 0.78065 0.76273 0.80822 1.21837 1.22861 1.19205 0.91625 0.91556 0.92982 0.94016 0.91285 0.92885 0.92450 0.90278 0.89989 0.91850 0.91184 0.88484 0.88349 0.89741 0.83139 0.83393 0.85160 0.89103 0.92893 0.89594 0.78666 0.94230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.09 8.49 71.98 0.61 -2.48 16 2 C -0.08 -2.40 0.93 -50.97 -0.05 -2.45 16 3 C -0.12 -3.78 7.84 71.98 0.56 -3.21 16 4 C 0.12 3.77 6.00 86.73 0.52 4.29 16 5 N -0.61 -19.65 3.19 -809.41 -2.58 -22.23 16 6 C 0.54 17.57 5.71 87.66 0.50 18.07 16 7 O -0.58 -22.47 16.06 -3.01 -0.05 -22.52 16 8 C -0.06 -1.59 2.09 -12.40 -0.03 -1.61 16 9 H 0.10 2.62 7.13 -2.39 -0.02 2.60 16 10 C -0.10 -2.17 5.24 30.62 0.16 -2.01 16 11 C -0.11 -1.71 5.98 30.62 0.18 -1.53 16 12 C -0.08 -1.21 5.67 29.74 0.17 -1.04 16 13 C -0.08 -1.72 5.74 -19.86 -0.11 -1.83 16 14 C -0.13 -2.40 9.61 22.36 0.21 -2.19 16 15 C -0.12 -2.41 10.05 22.20 0.22 -2.19 16 16 C -0.14 -3.41 10.05 22.20 0.22 -3.18 16 17 C -0.12 -3.73 8.53 22.36 0.19 -3.54 16 18 C -0.08 -2.14 5.11 -19.86 -0.10 -2.24 16 19 C 0.08 2.78 6.06 86.53 0.52 3.30 16 20 C 0.17 6.12 3.10 45.88 0.14 6.26 16 21 H 0.07 2.47 7.82 -2.39 -0.02 2.45 16 22 N -0.72 -33.21 4.48 -318.74 -1.43 -34.64 16 23 C -0.24 -12.07 9.96 84.03 0.84 -11.24 16 24 H 0.08 3.90 7.83 -2.91 -0.02 3.87 16 25 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 26 N -0.97 -56.89 13.06 21.65 0.28 -56.61 16 27 Si 0.97 44.20 29.55 68.60 2.03 46.23 16 28 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 29 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 30 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 31 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.05 1.33 8.07 -2.39 -0.02 1.31 16 34 H 0.04 1.55 6.25 -2.39 -0.01 1.54 16 35 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.06 2.00 8.02 -2.38 -0.02 1.98 16 38 H 0.08 2.52 7.73 -2.39 -0.02 2.50 16 39 H 0.08 1.56 8.04 -2.39 -0.02 1.54 16 40 H 0.06 1.45 8.08 -2.39 -0.02 1.43 16 41 H 0.07 1.09 8.10 -2.39 -0.02 1.07 16 42 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 43 H 0.10 1.06 8.12 -2.39 -0.02 1.04 16 44 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.15 1.86 8.05 -2.91 -0.02 1.84 16 46 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 47 H 0.13 2.77 8.06 -2.91 -0.02 2.75 16 48 H 0.09 3.03 7.25 -2.91 -0.02 3.01 16 49 H 0.05 2.02 7.92 -2.39 -0.02 2.00 16 50 H 0.09 2.38 7.55 -2.39 -0.02 2.37 16 51 H 0.38 18.91 5.58 -92.71 -0.52 18.40 16 52 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -66.38 404.14 3.87 -62.51 By element: Atomic # 1 Polarization: 39.08 SS G_CDS: 0.38 Total: 39.46 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: 5.24 Total: -12.20 kcal Atomic # 7 Polarization: -109.75 SS G_CDS: -3.73 Total: -113.48 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.05 Total: -22.52 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -66.38 3.87 -62.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995960395.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.738 kcal (2) G-P(sol) polarization free energy of solvation -66.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds