Wall clock time and date at job start Wed Apr 1 2020 02:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 110.64229 * 2 1 4 4 C 1.54323 * 110.72147 * 123.14261 * 2 1 3 5 5 N 1.47025 * 107.26937 * 140.55001 * 4 2 1 6 6 C 1.34778 * 125.64499 * 181.01961 * 5 4 2 7 7 O 1.21277 * 120.00003 * 5.11151 * 6 5 4 8 8 C 1.50698 * 119.99506 * 185.10778 * 6 5 4 9 9 H 1.08995 * 109.25396 * 336.76909 * 8 6 5 10 10 C 1.52730 * 109.25510 * 96.24378 * 8 6 5 11 11 C 1.53333 * 108.37410 * 171.31830 * 10 8 6 12 12 C 1.52740 * 108.37508 * 290.07794 * 11 10 8 13 13 C 1.50628 * 110.58918 * 51.05557 * 12 11 10 14 14 C 1.38917 * 117.74836 * 162.53233 * 13 12 11 15 15 C 1.37933 * 120.54187 * 179.76097 * 14 13 12 16 16 C 1.38263 * 119.77720 * 0.02562 * 15 14 13 17 17 C 1.37938 * 119.76763 * 0.10178 * 16 15 14 18 18 C 1.37587 * 122.55116 * 342.47619 * 13 12 11 19 19 C 1.47425 * 108.70301 * 1.29314 * 5 4 2 20 20 C 1.55123 * 104.72100 * 335.54826 * 19 5 4 21 21 H 1.09000 * 111.19542 * 279.18867 * 20 19 5 22 22 N 1.46503 * 110.90841 * 155.27828 * 20 19 5 23 23 C 1.36935 * 120.00442 * 92.97138 * 22 20 19 24 24 H 1.08004 * 119.99597 * 0.02562 * 23 22 20 25 25 C 1.38806 * 120.00436 * 180.02562 * 23 22 20 26 26 N 1.31620 * 119.99582 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 120.00236 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47262 * 89.99958 * 27 25 23 29 29 H 1.48506 * 109.47361 * 210.00012 * 27 25 23 30 30 H 1.48505 * 109.47337 * 330.00028 * 27 25 23 31 31 H 1.09008 * 109.46909 * 298.30880 * 1 2 3 32 32 H 1.09005 * 109.47077 * 58.30693 * 1 2 3 33 33 H 1.09001 * 109.47340 * 178.30984 * 1 2 3 34 34 H 1.08995 * 109.47361 * 181.68583 * 3 2 1 35 35 H 1.08994 * 109.47134 * 301.69271 * 3 2 1 36 36 H 1.09009 * 109.47079 * 61.69080 * 3 2 1 37 37 H 1.09002 * 109.88007 * 21.14052 * 4 2 1 38 38 H 1.08998 * 109.88485 * 259.97303 * 4 2 1 39 39 H 1.08994 * 109.68683 * 291.04181 * 10 8 6 40 40 H 1.09007 * 109.68667 * 51.59929 * 10 8 6 41 41 H 1.08994 * 109.68219 * 49.79471 * 11 10 8 42 42 H 1.08998 * 109.68586 * 170.31868 * 11 10 8 43 43 H 1.09004 * 109.25162 * 171.34665 * 12 11 10 44 44 H 1.08999 * 109.24926 * 290.76696 * 12 11 10 45 45 H 1.07998 * 119.73043 * 359.78282 * 14 13 12 46 46 H 1.08004 * 120.11121 * 179.97438 * 15 14 13 47 47 H 1.07995 * 120.11651 * 180.02562 * 16 15 14 48 48 H 1.07999 * 119.72282 * 180.02562 * 17 16 15 49 49 H 1.09005 * 110.36731 * 94.47973 * 19 5 4 50 50 H 1.08997 * 110.36402 * 216.79767 * 19 5 4 51 51 H 0.97009 * 119.99615 * 272.98169 * 22 20 19 52 52 H 0.97009 * 119.99703 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0694 1.4318 0.0000 4 6 2.0761 -0.7891 1.2086 5 7 3.2445 -1.5496 0.7415 6 6 3.9923 -2.3811 1.4937 7 8 3.6662 -2.6237 2.6363 8 6 5.2336 -3.0095 0.9147 9 1 5.1534 -3.0287 -0.1721 10 6 6.4518 -2.1800 1.3152 11 6 7.7148 -2.9473 0.9063 12 6 7.8488 -4.1708 1.8108 13 6 6.5626 -4.9543 1.8361 14 6 6.6125 -6.2649 2.2937 15 6 5.4681 -7.0332 2.3460 16 6 4.2610 -6.4955 1.9393 17 6 4.2098 -5.1951 1.4821 18 6 5.3621 -4.4199 1.4282 19 6 3.4665 -1.2467 -0.6841 20 6 2.0789 -0.7975 -1.2125 21 1 1.4451 -1.6559 -1.4348 22 7 2.2213 0.0656 -2.3877 23 6 2.1866 -0.4773 -3.6443 24 1 2.0538 -1.5419 -3.7690 25 6 2.3221 0.3404 -4.7577 26 7 2.4844 1.6376 -4.6056 27 14 2.2740 -0.4003 -6.4719 28 1 0.8731 -0.4184 -6.9642 29 1 3.1100 0.4167 -7.3878 30 1 2.8007 -1.7880 -6.4265 31 1 -0.3633 0.4874 0.9048 32 1 -0.3633 0.5399 -0.8745 33 1 -0.3634 -1.0272 -0.0303 34 1 3.1587 1.4097 -0.0302 35 1 1.6923 1.9621 -0.8744 36 1 1.7414 1.9436 0.9048 37 1 1.3130 -1.4732 1.5800 38 1 2.3741 -0.0991 1.9979 39 1 6.4251 -1.2178 0.8038 40 1 6.4507 -2.0231 2.3940 41 1 7.6304 -3.2662 -0.1325 42 1 8.5883 -2.3059 1.0236 43 1 8.6505 -4.8079 1.4371 44 1 8.0914 -3.8451 2.8223 45 1 7.5550 -6.6857 2.6116 46 1 5.5150 -8.0516 2.7026 47 1 3.3615 -7.0920 1.9782 48 1 3.2665 -4.7758 1.1649 49 1 4.1947 -0.4428 -0.7923 50 1 3.8031 -2.1382 -1.2133 51 1 2.3404 1.0218 -2.2756 52 1 2.5787 2.2091 -5.3838 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995960401.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:59 Heat of formation + Delta-G solvation = -11.276216 kcal Electronic energy + Delta-G solvation = -30981.040796 eV Core-core repulsion = 27137.587005 eV Total energy + Delta-G solvation = -3843.453791 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.79725 -39.49228 -37.84137 -36.01377 -34.15608 -33.27963 -32.52328 -30.84897 -30.30411 -29.17973 -27.56122 -27.02594 -26.41477 -24.14289 -23.85700 -22.80610 -22.44475 -21.44842 -19.70414 -18.89319 -18.56403 -17.37194 -16.93058 -16.55588 -15.87027 -15.43215 -15.33543 -15.15131 -14.58206 -14.29353 -14.08896 -13.77459 -13.71616 -13.60150 -13.32804 -13.09776 -12.97280 -12.81324 -12.74045 -12.49292 -12.19838 -12.04765 -11.95276 -11.69575 -11.56106 -11.46292 -11.31096 -11.16295 -11.06136 -10.93716 -10.75370 -10.57925 -10.49778 -10.41522 -10.24864 -9.91839 -9.73960 -9.53876 -9.04100 -8.75315 -8.58128 -8.33509 -7.11622 -5.89264 -3.19469 1.32838 1.37729 2.79026 3.19132 3.36713 3.43012 3.43843 3.75738 4.41508 4.48457 4.53581 4.64601 4.83602 4.88486 4.90317 5.02127 5.05922 5.08591 5.14701 5.17381 5.29095 5.35561 5.41315 5.47308 5.54763 5.59306 5.65997 5.70817 5.73774 5.77186 5.82916 5.86220 5.87644 5.96960 5.99660 6.00544 6.08885 6.12420 6.15029 6.20559 6.30529 6.32899 6.40271 6.45686 6.50217 6.55394 6.60896 6.64798 6.70143 6.86156 6.98598 7.60064 7.78860 8.28691 8.37553 9.41330 9.94956 10.30339 11.32716 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011430 B = 0.003228 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.075572 B = 8672.278883 C = 9565.505683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.088 4.088 3 C -0.134 4.134 4 C 0.121 3.879 5 N -0.611 5.611 6 C 0.533 3.467 7 O -0.545 6.545 8 C -0.065 4.065 9 H 0.103 0.897 10 C -0.106 4.106 11 C -0.117 4.117 12 C -0.081 4.081 13 C -0.071 4.071 14 C -0.126 4.126 15 C -0.121 4.121 16 C -0.124 4.124 17 C -0.097 4.097 18 C -0.055 4.055 19 C 0.071 3.929 20 C 0.182 3.818 21 H 0.068 0.932 22 N -0.709 5.709 23 C -0.249 4.249 24 H 0.072 0.928 25 C -0.007 4.007 26 N -0.929 5.929 27 Si 0.907 3.093 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.048 0.952 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.119 0.881 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.116 0.884 49 H 0.070 0.930 50 H 0.069 0.931 51 H 0.390 0.610 52 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.006 -10.132 13.409 18.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.089 4.089 3 C -0.191 4.191 4 C -0.002 4.002 5 N -0.344 5.344 6 C 0.321 3.679 7 O -0.423 6.423 8 C -0.086 4.086 9 H 0.121 0.879 10 C -0.144 4.144 11 C -0.155 4.155 12 C -0.118 4.118 13 C -0.071 4.071 14 C -0.144 4.144 15 C -0.139 4.139 16 C -0.142 4.142 17 C -0.115 4.115 18 C -0.055 4.055 19 C -0.055 4.055 20 C 0.069 3.931 21 H 0.086 0.914 22 N -0.350 5.350 23 C -0.380 4.380 24 H 0.090 0.910 25 C -0.203 4.203 26 N -0.577 5.577 27 Si 0.737 3.263 28 H -0.216 1.216 29 H -0.217 1.217 30 H -0.207 1.207 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.137 0.863 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.134 0.866 49 H 0.088 0.912 50 H 0.087 0.913 51 H 0.227 0.773 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.856 -10.374 13.863 18.623 hybrid contribution -0.030 -0.093 -1.014 1.019 sum 6.826 -10.467 12.849 17.923 Atomic orbital electron populations 1.21689 0.93455 1.01660 1.01819 1.21883 0.96076 0.95994 0.94974 1.21711 1.00958 0.94669 1.01761 1.22030 0.87490 0.94119 0.96594 1.48546 1.29556 1.43910 1.12414 1.20050 0.83892 0.78466 0.85520 1.90679 1.71571 1.61727 1.18310 1.20211 0.94121 0.92497 1.01808 0.87893 1.21455 0.92446 0.98210 1.02272 1.21544 0.97583 0.96388 0.99957 1.20493 0.94344 0.96290 1.00641 1.19512 0.94370 0.94441 0.98774 1.21063 0.98445 0.93792 1.01072 1.21026 0.92859 0.99644 1.00347 1.21014 0.97887 0.95433 0.99879 1.21147 0.97654 0.94059 0.98657 1.19083 0.93037 0.93841 0.99570 1.23601 1.02695 1.00580 0.78650 1.21371 0.91658 0.93433 0.86620 0.91376 1.42443 1.86059 1.06565 0.99950 1.19257 1.42791 0.92700 0.83218 0.91048 1.24737 1.02254 0.95429 0.97917 1.69654 1.55944 1.02770 1.29294 0.86208 0.77509 0.78081 0.84466 1.21626 1.21719 1.20666 0.93214 0.91379 0.92889 0.92636 0.90935 0.93283 0.91766 0.91995 0.90635 0.90927 0.91133 0.90855 0.90698 0.90590 0.86296 0.86275 0.86208 0.86600 0.91164 0.91288 0.77332 0.93330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 8.48 37.16 0.32 -1.52 16 2 C -0.09 -1.35 0.85 -152.67 -0.13 -1.48 16 3 C -0.13 -2.06 7.54 37.16 0.28 -1.78 16 4 C 0.12 1.82 6.05 -3.06 -0.02 1.80 16 5 N -0.61 -9.57 3.32 -170.38 -0.57 -10.14 16 6 C 0.53 8.55 5.66 -10.99 -0.06 8.49 16 7 O -0.55 -10.32 16.23 5.56 0.09 -10.23 16 8 C -0.07 -0.89 2.32 -93.09 -0.22 -1.11 16 9 H 0.10 1.37 6.30 -51.93 -0.33 1.04 16 10 C -0.11 -1.25 5.24 -26.70 -0.14 -1.39 16 11 C -0.12 -1.13 5.98 -26.69 -0.16 -1.29 16 12 C -0.08 -0.77 5.67 -28.05 -0.16 -0.93 16 13 C -0.07 -0.85 5.73 -104.64 -0.60 -1.45 16 14 C -0.13 -1.37 9.61 -39.44 -0.38 -1.75 16 15 C -0.12 -1.32 10.05 -39.68 -0.40 -1.72 16 16 C -0.12 -1.51 10.05 -39.68 -0.40 -1.91 16 17 C -0.10 -1.37 8.55 -39.41 -0.34 -1.70 16 18 C -0.05 -0.76 5.11 -104.61 -0.53 -1.29 16 19 C 0.07 1.16 5.92 -2.41 -0.01 1.15 16 20 C 0.18 3.30 2.97 -65.66 -0.20 3.11 16 21 H 0.07 1.29 7.99 -51.93 -0.41 0.87 16 22 N -0.71 -15.97 5.15 -51.24 -0.26 -16.23 16 23 C -0.25 -6.36 9.96 -15.06 -0.15 -6.51 16 24 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 25 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 26 N -0.93 -26.32 13.06 55.49 0.72 -25.59 16 27 Si 0.91 21.26 29.55 -169.99 -5.02 16.24 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 29 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 30 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 31 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.05 0.73 8.13 -51.93 -0.42 0.30 16 34 H 0.05 0.88 7.44 -51.93 -0.39 0.49 16 35 H 0.07 1.26 6.76 -51.93 -0.35 0.90 16 36 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 37 H 0.06 0.96 7.82 -51.93 -0.41 0.56 16 38 H 0.06 0.92 7.84 -51.93 -0.41 0.51 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.91 8.08 -51.92 -0.42 0.49 16 41 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 44 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.12 1.00 8.05 -52.49 -0.42 0.58 16 46 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 47 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 48 H 0.12 1.70 7.26 -52.49 -0.38 1.32 16 49 H 0.07 1.20 7.71 -51.93 -0.40 0.80 16 50 H 0.07 1.11 6.85 -51.93 -0.36 0.76 16 51 H 0.39 9.28 5.46 -40.82 -0.22 9.05 16 52 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 402.89 15.07 6.07 6.07 Total: -1.00 -29.78 402.89 -11.05 -40.83 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -8.69 Total: 10.60 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -3.39 Total: -11.55 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: -0.11 Total: -51.96 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -29.78 -11.05 -40.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995960401.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.556 kcal (2) G-P(sol) polarization free energy of solvation -29.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds