Wall clock time and date at job start Wed Apr 1 2020 02:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 110.64229 * 2 1 4 4 C 1.54323 * 110.72147 * 123.14261 * 2 1 3 5 5 N 1.47025 * 107.26937 * 140.55001 * 4 2 1 6 6 C 1.34778 * 125.64499 * 181.01961 * 5 4 2 7 7 O 1.21277 * 120.00003 * 5.11151 * 6 5 4 8 8 C 1.50698 * 119.99506 * 185.10778 * 6 5 4 9 9 H 1.08995 * 109.25396 * 336.76909 * 8 6 5 10 10 C 1.52730 * 109.25510 * 96.24378 * 8 6 5 11 11 C 1.53333 * 108.37410 * 171.31830 * 10 8 6 12 12 C 1.52740 * 108.37508 * 290.07794 * 11 10 8 13 13 C 1.50628 * 110.58918 * 51.05557 * 12 11 10 14 14 C 1.38917 * 117.74836 * 162.53233 * 13 12 11 15 15 C 1.37933 * 120.54187 * 179.76097 * 14 13 12 16 16 C 1.38263 * 119.77720 * 0.02562 * 15 14 13 17 17 C 1.37938 * 119.76763 * 0.10178 * 16 15 14 18 18 C 1.37587 * 122.55116 * 342.47619 * 13 12 11 19 19 C 1.47425 * 108.70301 * 1.29314 * 5 4 2 20 20 C 1.55123 * 104.72100 * 335.54826 * 19 5 4 21 21 H 1.09000 * 111.19542 * 279.18867 * 20 19 5 22 22 N 1.46503 * 110.90841 * 155.27828 * 20 19 5 23 23 C 1.36935 * 120.00442 * 92.97138 * 22 20 19 24 24 H 1.08004 * 119.99597 * 0.02562 * 23 22 20 25 25 C 1.38806 * 120.00436 * 180.02562 * 23 22 20 26 26 N 1.31620 * 119.99582 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 120.00236 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47262 * 89.99958 * 27 25 23 29 29 H 1.48506 * 109.47361 * 210.00012 * 27 25 23 30 30 H 1.48505 * 109.47337 * 330.00028 * 27 25 23 31 31 H 1.09008 * 109.46909 * 298.30880 * 1 2 3 32 32 H 1.09005 * 109.47077 * 58.30693 * 1 2 3 33 33 H 1.09001 * 109.47340 * 178.30984 * 1 2 3 34 34 H 1.08995 * 109.47361 * 181.68583 * 3 2 1 35 35 H 1.08994 * 109.47134 * 301.69271 * 3 2 1 36 36 H 1.09009 * 109.47079 * 61.69080 * 3 2 1 37 37 H 1.09002 * 109.88007 * 21.14052 * 4 2 1 38 38 H 1.08998 * 109.88485 * 259.97303 * 4 2 1 39 39 H 1.08994 * 109.68683 * 291.04181 * 10 8 6 40 40 H 1.09007 * 109.68667 * 51.59929 * 10 8 6 41 41 H 1.08994 * 109.68219 * 49.79471 * 11 10 8 42 42 H 1.08998 * 109.68586 * 170.31868 * 11 10 8 43 43 H 1.09004 * 109.25162 * 171.34665 * 12 11 10 44 44 H 1.08999 * 109.24926 * 290.76696 * 12 11 10 45 45 H 1.07998 * 119.73043 * 359.78282 * 14 13 12 46 46 H 1.08004 * 120.11121 * 179.97438 * 15 14 13 47 47 H 1.07995 * 120.11651 * 180.02562 * 16 15 14 48 48 H 1.07999 * 119.72282 * 180.02562 * 17 16 15 49 49 H 1.09005 * 110.36731 * 94.47973 * 19 5 4 50 50 H 1.08997 * 110.36402 * 216.79767 * 19 5 4 51 51 H 0.97009 * 119.99615 * 272.98169 * 22 20 19 52 52 H 0.97009 * 119.99703 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0694 1.4318 0.0000 4 6 2.0761 -0.7891 1.2086 5 7 3.2445 -1.5496 0.7415 6 6 3.9923 -2.3811 1.4937 7 8 3.6662 -2.6237 2.6363 8 6 5.2336 -3.0095 0.9147 9 1 5.1534 -3.0287 -0.1721 10 6 6.4518 -2.1800 1.3152 11 6 7.7148 -2.9473 0.9063 12 6 7.8488 -4.1708 1.8108 13 6 6.5626 -4.9543 1.8361 14 6 6.6125 -6.2649 2.2937 15 6 5.4681 -7.0332 2.3460 16 6 4.2610 -6.4955 1.9393 17 6 4.2098 -5.1951 1.4821 18 6 5.3621 -4.4199 1.4282 19 6 3.4665 -1.2467 -0.6841 20 6 2.0789 -0.7975 -1.2125 21 1 1.4451 -1.6559 -1.4348 22 7 2.2213 0.0656 -2.3877 23 6 2.1866 -0.4773 -3.6443 24 1 2.0538 -1.5419 -3.7690 25 6 2.3221 0.3404 -4.7577 26 7 2.4844 1.6376 -4.6056 27 14 2.2740 -0.4003 -6.4719 28 1 0.8731 -0.4184 -6.9642 29 1 3.1100 0.4167 -7.3878 30 1 2.8007 -1.7880 -6.4265 31 1 -0.3633 0.4874 0.9048 32 1 -0.3633 0.5399 -0.8745 33 1 -0.3634 -1.0272 -0.0303 34 1 3.1587 1.4097 -0.0302 35 1 1.6923 1.9621 -0.8744 36 1 1.7414 1.9436 0.9048 37 1 1.3130 -1.4732 1.5800 38 1 2.3741 -0.0991 1.9979 39 1 6.4251 -1.2178 0.8038 40 1 6.4507 -2.0231 2.3940 41 1 7.6304 -3.2662 -0.1325 42 1 8.5883 -2.3059 1.0236 43 1 8.6505 -4.8079 1.4371 44 1 8.0914 -3.8451 2.8223 45 1 7.5550 -6.6857 2.6116 46 1 5.5150 -8.0516 2.7026 47 1 3.3615 -7.0920 1.9782 48 1 3.2665 -4.7758 1.1649 49 1 4.1947 -0.4428 -0.7923 50 1 3.8031 -2.1382 -1.2133 51 1 2.3404 1.0218 -2.2756 52 1 2.5787 2.2091 -5.3838 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995960401.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:57 Heat of formation + Delta-G solvation = -25.679426 kcal Electronic energy + Delta-G solvation = -30981.665366 eV Core-core repulsion = 27137.587005 eV Total energy + Delta-G solvation = -3844.078361 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.92998 -40.65550 -39.13527 -36.91983 -35.87899 -34.67257 -33.52040 -32.65180 -31.18047 -30.11695 -29.16133 -28.29077 -27.59371 -25.82732 -25.00082 -23.67485 -23.47095 -22.86550 -20.68422 -20.17277 -19.85283 -19.20234 -18.20404 -17.53282 -17.19434 -16.63912 -16.38701 -16.22422 -16.12444 -15.64478 -15.42698 -15.05034 -14.83989 -14.67247 -14.45256 -14.38740 -14.23597 -14.18554 -13.82450 -13.52392 -13.41308 -13.25968 -13.04556 -12.99379 -12.85999 -12.77911 -12.61719 -12.60377 -12.33817 -12.11149 -12.06487 -11.99697 -11.85510 -11.66745 -11.53612 -11.34337 -11.28207 -10.93335 -10.77462 -9.72282 -9.65920 -9.48884 -9.01050 -7.93241 -5.21872 0.41037 0.46497 1.50216 1.51044 1.51990 1.58947 1.93174 2.57672 2.82764 3.30318 3.37878 3.51386 3.64681 3.75251 3.79774 3.85633 3.97261 4.04501 4.08847 4.14127 4.18219 4.25898 4.29380 4.34811 4.41269 4.42650 4.52112 4.57238 4.64169 4.72477 4.76551 4.80930 4.83864 4.85835 4.94457 4.97273 5.01105 5.04097 5.09411 5.10588 5.14081 5.17138 5.25886 5.30099 5.36113 5.41583 5.48622 5.55885 5.57893 5.60461 5.69698 6.11016 6.28323 6.46847 7.07746 7.37184 8.08528 8.34476 9.29462 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011430 B = 0.003228 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.075572 B = 8672.278883 C = 9565.505683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.078 4.078 3 C -0.127 4.127 4 C 0.123 3.877 5 N -0.610 5.610 6 C 0.534 3.466 7 O -0.575 6.575 8 C -0.062 4.062 9 H 0.101 0.899 10 C -0.104 4.104 11 C -0.113 4.113 12 C -0.079 4.079 13 C -0.080 4.080 14 C -0.127 4.127 15 C -0.121 4.121 16 C -0.136 4.136 17 C -0.123 4.123 18 C -0.078 4.078 19 C 0.086 3.914 20 C 0.175 3.825 21 H 0.061 0.939 22 N -0.717 5.717 23 C -0.243 4.243 24 H 0.075 0.925 25 C -0.064 4.064 26 N -0.964 5.964 27 Si 0.965 3.035 28 H -0.290 1.290 29 H -0.297 1.297 30 H -0.270 1.270 31 H 0.074 0.926 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.047 0.953 35 H 0.050 0.950 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.084 0.916 45 H 0.149 0.851 46 H 0.148 0.852 47 H 0.133 0.867 48 H 0.096 0.904 49 H 0.065 0.935 50 H 0.071 0.929 51 H 0.383 0.617 52 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.434 -11.810 14.519 20.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.080 4.080 3 C -0.185 4.185 4 C 0.000 4.000 5 N -0.342 5.342 6 C 0.323 3.677 7 O -0.455 6.455 8 C -0.083 4.083 9 H 0.118 0.882 10 C -0.142 4.142 11 C -0.150 4.150 12 C -0.116 4.116 13 C -0.080 4.080 14 C -0.145 4.145 15 C -0.139 4.139 16 C -0.153 4.153 17 C -0.141 4.141 18 C -0.079 4.079 19 C -0.040 4.040 20 C 0.064 3.936 21 H 0.079 0.921 22 N -0.358 5.358 23 C -0.374 4.374 24 H 0.093 0.907 25 C -0.257 4.257 26 N -0.614 5.614 27 Si 0.795 3.205 28 H -0.218 1.218 29 H -0.224 1.224 30 H -0.195 1.195 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.113 0.887 43 H 0.116 0.884 44 H 0.102 0.898 45 H 0.167 0.833 46 H 0.166 0.834 47 H 0.151 0.849 48 H 0.114 0.886 49 H 0.083 0.917 50 H 0.089 0.911 51 H 0.218 0.782 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.279 -12.088 14.999 20.967 hybrid contribution -0.508 0.352 -1.249 1.394 sum 7.771 -11.736 13.750 19.677 Atomic orbital electron populations 1.21657 0.92348 1.02030 1.02198 1.21809 0.96930 0.95697 0.93532 1.21644 1.00370 0.94494 1.01959 1.22045 0.87397 0.94177 0.96397 1.48548 1.29778 1.43969 1.11954 1.20501 0.84276 0.77813 0.85073 1.90653 1.72452 1.62718 1.19639 1.20222 0.93563 0.93054 1.01420 0.88151 1.21470 0.92833 0.98268 1.01616 1.21551 0.96978 0.96628 0.99870 1.20566 0.93663 0.96214 1.01157 1.19885 0.94669 0.95371 0.98094 1.21473 0.99751 0.93269 0.99968 1.21410 0.92218 1.00971 0.99265 1.21267 0.99355 0.94918 0.99807 1.21174 0.97213 0.95329 1.00434 1.19214 0.93894 0.93734 1.01013 1.23256 1.01228 1.00400 0.79118 1.21498 0.92574 0.93111 0.86429 0.92091 1.42509 1.86245 1.06667 1.00359 1.19594 1.40524 0.92864 0.84448 0.90677 1.25414 1.03385 0.95833 1.01108 1.69792 1.58121 1.03858 1.29607 0.85274 0.77048 0.77657 0.80561 1.21769 1.22423 1.19540 0.90743 0.93191 0.92415 0.93384 0.93108 0.90733 0.91439 0.91242 0.90675 0.91851 0.91283 0.88741 0.88368 0.89783 0.83288 0.83388 0.84882 0.88580 0.91664 0.91101 0.78173 0.94007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.46 8.48 71.98 0.61 -2.85 16 2 C -0.08 -2.38 0.85 -50.99 -0.04 -2.42 16 3 C -0.13 -3.87 7.54 71.98 0.54 -3.33 16 4 C 0.12 3.61 6.05 86.73 0.52 4.14 16 5 N -0.61 -19.12 3.32 -811.36 -2.70 -21.82 16 6 C 0.53 17.30 5.66 87.66 0.50 17.80 16 7 O -0.57 -22.01 16.23 -3.02 -0.05 -22.06 16 8 C -0.06 -1.68 2.32 -12.40 -0.03 -1.71 16 9 H 0.10 2.71 6.30 -2.39 -0.02 2.70 16 10 C -0.10 -2.37 5.24 30.62 0.16 -2.21 16 11 C -0.11 -1.93 5.98 30.62 0.18 -1.75 16 12 C -0.08 -1.29 5.67 29.74 0.17 -1.12 16 13 C -0.08 -1.79 5.73 -19.88 -0.11 -1.90 16 14 C -0.13 -2.41 9.61 22.36 0.21 -2.20 16 15 C -0.12 -2.35 10.05 22.20 0.22 -2.13 16 16 C -0.14 -3.20 10.05 22.20 0.22 -2.98 16 17 C -0.12 -3.53 8.55 22.38 0.19 -3.34 16 18 C -0.08 -2.13 5.11 -19.86 -0.10 -2.23 16 19 C 0.09 2.84 5.92 86.93 0.51 3.35 16 20 C 0.18 6.39 2.97 46.46 0.14 6.53 16 21 H 0.06 2.32 7.99 -2.39 -0.02 2.30 16 22 N -0.72 -32.81 5.15 -316.02 -1.63 -34.44 16 23 C -0.24 -12.49 9.96 84.03 0.84 -11.66 16 24 H 0.08 3.74 7.83 -2.91 -0.02 3.72 16 25 C -0.06 -3.48 5.50 84.86 0.47 -3.02 16 26 N -0.96 -55.70 13.06 21.65 0.28 -55.42 16 27 Si 0.96 44.08 29.55 68.60 2.03 46.11 16 28 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 29 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 30 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 31 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.06 1.53 8.13 -2.39 -0.02 1.51 16 34 H 0.05 1.51 7.44 -2.39 -0.02 1.49 16 35 H 0.05 1.78 6.76 -2.39 -0.02 1.77 16 36 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 37 H 0.07 1.97 7.82 -2.39 -0.02 1.95 16 38 H 0.07 1.98 7.84 -2.39 -0.02 1.96 16 39 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.06 1.55 8.08 -2.38 -0.02 1.53 16 41 H 0.07 1.22 8.10 -2.39 -0.02 1.20 16 42 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.10 1.17 8.13 -2.39 -0.02 1.15 16 44 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.15 1.88 8.05 -2.91 -0.02 1.86 16 46 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16 47 H 0.13 2.62 8.06 -2.91 -0.02 2.59 16 48 H 0.10 3.00 7.26 -2.91 -0.02 2.97 16 49 H 0.07 2.25 7.71 -2.38 -0.02 2.23 16 50 H 0.07 2.31 6.85 -2.39 -0.02 2.30 16 51 H 0.38 18.67 5.46 -92.70 -0.51 18.16 16 52 H 0.25 14.21 8.31 -92.70 -0.77 13.44 16 Total: -1.00 -64.84 402.89 3.54 -61.30 By element: Atomic # 1 Polarization: 38.96 SS G_CDS: 0.40 Total: 39.35 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 5.21 Total: -13.03 kcal Atomic # 7 Polarization: -107.63 SS G_CDS: -4.04 Total: -111.68 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.05 Total: -22.06 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -64.84 3.54 -61.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995960401.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.624 kcal (2) G-P(sol) polarization free energy of solvation -64.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds