Wall clock time and date at job start Wed Apr 1 2020 02:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 110.63921 * 2 1 4 4 C 1.54324 * 110.71952 * 123.14026 * 2 1 3 5 5 N 1.47025 * 107.27233 * 140.55756 * 4 2 1 6 6 C 1.34777 * 125.64930 * 181.02152 * 5 4 2 7 7 O 1.21281 * 119.99823 * 5.25015 * 6 5 4 8 8 C 1.50698 * 120.00123 * 185.25137 * 6 5 4 9 9 H 1.09003 * 109.21782 * 24.49693 * 8 6 5 10 10 C 1.52734 * 109.24899 * 265.05584 * 8 6 5 11 11 C 1.53327 * 108.39949 * 188.64265 * 10 8 6 12 12 C 1.52736 * 108.37985 * 69.84861 * 11 10 8 13 13 C 1.50626 * 110.57413 * 308.82775 * 12 11 10 14 14 C 1.38918 * 117.75487 * 198.08774 * 13 12 11 15 15 C 1.37927 * 120.54754 * 180.64852 * 14 13 12 16 16 C 1.38265 * 119.76854 * 359.43636 * 15 14 13 17 17 C 1.37938 * 119.77487 * 0.15622 * 16 15 14 18 18 C 1.37658 * 122.56534 * 17.92690 * 13 12 11 19 19 C 1.47422 * 108.70189 * 1.28629 * 5 4 2 20 20 C 1.55129 * 104.72345 * 335.55363 * 19 5 4 21 21 H 1.09003 * 111.19235 * 279.19054 * 20 19 5 22 22 N 1.46502 * 110.90770 * 155.27524 * 20 19 5 23 23 C 1.36937 * 119.99915 * 92.97613 * 22 20 19 24 24 H 1.07998 * 119.99991 * 0.02562 * 23 22 20 25 25 C 1.38810 * 119.99732 * 179.97438 * 23 22 20 26 26 N 1.31620 * 120.00197 * 0.02562 * 25 23 22 27 27 Si 1.86807 * 119.99918 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.46767 * 90.00055 * 27 25 23 29 29 H 1.48494 * 109.47394 * 210.00168 * 27 25 23 30 30 H 1.48500 * 109.46982 * 330.00401 * 27 25 23 31 31 H 1.09000 * 109.47490 * 298.31386 * 1 2 3 32 32 H 1.09003 * 109.47119 * 58.31403 * 1 2 3 33 33 H 1.09001 * 109.46774 * 178.31269 * 1 2 3 34 34 H 1.09003 * 109.46696 * 181.69029 * 3 2 1 35 35 H 1.09000 * 109.47033 * 301.68317 * 3 2 1 36 36 H 1.08997 * 109.47408 * 61.68711 * 3 2 1 37 37 H 1.09002 * 109.88385 * 21.13829 * 4 2 1 38 38 H 1.09005 * 110.01016 * 260.04871 * 4 2 1 39 39 H 1.08997 * 109.67967 * 68.91714 * 10 8 6 40 40 H 1.09000 * 109.70906 * 308.38555 * 10 8 6 41 41 H 1.08990 * 109.68120 * 310.12126 * 11 10 8 42 42 H 1.09001 * 109.70778 * 189.58490 * 11 10 8 43 43 H 1.09003 * 109.25227 * 188.55009 * 12 11 10 44 44 H 1.08995 * 109.23173 * 69.09229 * 12 11 10 45 45 H 1.08005 * 119.72665 * 0.36503 * 14 13 12 46 46 H 1.07993 * 120.11767 * 179.71379 * 15 14 13 47 47 H 1.08001 * 120.11275 * 180.17739 * 16 15 14 48 48 H 1.07998 * 119.72594 * 179.97438 * 17 16 15 49 49 H 1.09007 * 110.36668 * 94.48156 * 19 5 4 50 50 H 1.08999 * 110.36983 * 216.80358 * 19 5 4 51 51 H 0.96998 * 119.99562 * 272.97562 * 22 20 19 52 52 H 0.97000 * 119.99900 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0693 1.4318 0.0000 4 6 2.0760 -0.7891 1.2086 5 7 3.2445 -1.5495 0.7417 6 6 3.9923 -2.3810 1.4939 7 8 3.6647 -2.6256 2.6357 8 6 5.2356 -3.0068 0.9162 9 1 5.6084 -2.3814 0.1051 10 6 4.8946 -4.3913 0.3687 11 6 6.2016 -5.0957 -0.0141 12 6 6.9595 -5.4344 1.2679 13 6 7.0843 -4.2171 2.1464 14 6 8.0502 -4.2360 3.1446 15 6 8.2053 -3.1577 3.9905 16 6 7.4010 -2.0436 3.8370 17 6 6.4468 -2.0195 2.8411 18 6 6.2869 -3.1059 1.9904 19 6 3.4666 -1.2467 -0.6839 20 6 2.0790 -0.7976 -1.2124 21 1 1.4452 -1.6561 -1.4346 22 7 2.2215 0.0655 -2.3876 23 6 2.1868 -0.4777 -3.6442 24 1 2.0540 -1.5422 -3.7688 25 6 2.3213 0.3401 -4.7577 26 7 2.4826 1.6376 -4.6057 27 14 2.2747 -0.4008 -6.4719 28 1 0.8739 -0.4211 -6.9644 29 1 3.1096 0.4172 -7.3877 30 1 2.8034 -1.7878 -6.4261 31 1 -0.3634 0.4874 0.9047 32 1 -0.3633 0.5398 -0.8745 33 1 -0.3633 -1.0272 -0.0303 34 1 3.1587 1.4096 -0.0303 35 1 1.6922 1.9620 -0.8745 36 1 1.7413 1.9436 0.9047 37 1 1.3129 -1.4731 1.5801 38 1 2.3735 -0.1009 1.9998 39 1 4.2598 -4.2917 -0.5117 40 1 4.3753 -4.9708 1.1320 41 1 6.8066 -4.4348 -0.6347 42 1 5.9788 -6.0114 -0.5617 43 1 7.9552 -5.7964 1.0118 44 1 6.4216 -6.2136 1.8078 45 1 8.6820 -5.1041 3.2622 46 1 8.9554 -3.1816 4.7670 47 1 7.5195 -1.1949 4.4944 48 1 5.8187 -1.1490 2.7223 49 1 4.1947 -0.4428 -0.7920 50 1 3.8032 -2.1382 -1.2131 51 1 2.3404 1.0216 -2.2756 52 1 2.5763 2.2091 -5.3839 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995960404.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:02 Heat of formation + Delta-G solvation = -11.907991 kcal Electronic energy + Delta-G solvation = -30974.107343 eV Core-core repulsion = 27130.626156 eV Total energy + Delta-G solvation = -3843.481187 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.80111 -39.49243 -37.84104 -36.02222 -34.15529 -33.27301 -32.52994 -30.84860 -30.30627 -29.18910 -27.56348 -27.02666 -26.39330 -24.16392 -23.83764 -22.80707 -22.44740 -21.45228 -19.69079 -18.92961 -18.54475 -17.37394 -16.92001 -16.58944 -15.75772 -15.53225 -15.33399 -15.11021 -14.64465 -14.19470 -14.07399 -13.81718 -13.76421 -13.64300 -13.38190 -12.98957 -12.92118 -12.87999 -12.69549 -12.48158 -12.27458 -12.05157 -11.91495 -11.67306 -11.58055 -11.47861 -11.30587 -11.16757 -11.05309 -10.93870 -10.74711 -10.58405 -10.49342 -10.42359 -10.25133 -9.92389 -9.74003 -9.53838 -9.03891 -8.76765 -8.59110 -8.32962 -7.11635 -5.89194 -3.19462 1.31916 1.36907 2.78477 3.19355 3.36562 3.42571 3.43772 3.74813 4.41285 4.48684 4.53250 4.64767 4.83886 4.88083 4.90880 5.01412 5.06284 5.08493 5.14140 5.17796 5.29384 5.36097 5.41428 5.47304 5.55108 5.59164 5.65182 5.71481 5.73791 5.77060 5.83235 5.86008 5.88075 5.96703 5.99513 6.00582 6.08143 6.12370 6.15692 6.21110 6.30610 6.32977 6.40702 6.45244 6.49298 6.55249 6.60390 6.64957 6.70222 6.86264 6.97638 7.59808 7.79062 8.28683 8.37311 9.41280 9.95046 10.30357 11.32787 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012267 B = 0.003206 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.018820 B = 8730.693040 C = 9955.645865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.088 4.088 3 C -0.134 4.134 4 C 0.121 3.879 5 N -0.611 5.611 6 C 0.533 3.467 7 O -0.545 6.545 8 C -0.064 4.064 9 H 0.102 0.898 10 C -0.108 4.108 11 C -0.117 4.117 12 C -0.081 4.081 13 C -0.071 4.071 14 C -0.126 4.126 15 C -0.121 4.121 16 C -0.125 4.125 17 C -0.097 4.097 18 C -0.054 4.054 19 C 0.070 3.930 20 C 0.183 3.817 21 H 0.069 0.931 22 N -0.709 5.709 23 C -0.249 4.249 24 H 0.072 0.928 25 C -0.007 4.007 26 N -0.929 5.929 27 Si 0.907 3.093 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.048 0.952 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.119 0.881 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.115 0.885 49 H 0.069 0.931 50 H 0.069 0.931 51 H 0.390 0.610 52 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.533 -9.434 13.708 18.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.089 4.089 3 C -0.191 4.191 4 C -0.002 4.002 5 N -0.345 5.345 6 C 0.321 3.679 7 O -0.423 6.423 8 C -0.085 4.085 9 H 0.120 0.880 10 C -0.146 4.146 11 C -0.155 4.155 12 C -0.118 4.118 13 C -0.071 4.071 14 C -0.144 4.144 15 C -0.139 4.139 16 C -0.143 4.143 17 C -0.115 4.115 18 C -0.055 4.055 19 C -0.056 4.056 20 C 0.070 3.930 21 H 0.086 0.914 22 N -0.350 5.350 23 C -0.380 4.380 24 H 0.090 0.910 25 C -0.204 4.204 26 N -0.577 5.577 27 Si 0.738 3.262 28 H -0.216 1.216 29 H -0.217 1.217 30 H -0.207 1.207 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.137 0.863 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.133 0.867 49 H 0.087 0.913 50 H 0.088 0.912 51 H 0.227 0.773 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.383 -9.676 14.161 18.673 hybrid contribution 0.119 0.128 -0.919 0.935 sum 7.502 -9.548 13.242 17.967 Atomic orbital electron populations 1.21686 0.93448 1.01665 1.01816 1.21880 0.96077 0.95984 0.94986 1.21713 1.00957 0.94683 1.01765 1.22027 0.87525 0.94111 0.96566 1.48537 1.29695 1.43786 1.12458 1.20061 0.84161 0.78346 0.85349 1.90681 1.71790 1.61452 1.18339 1.20176 0.92043 0.98828 0.97434 0.87978 1.21484 0.98195 0.93509 1.01398 1.21543 0.96055 1.00913 0.96973 1.20496 1.01041 0.95128 0.95114 1.19538 0.95786 0.94879 0.96853 1.21067 0.98680 0.98736 0.95898 1.21022 0.99606 0.93911 0.99322 1.21012 0.96331 0.98492 0.98434 1.21116 0.97368 0.97973 0.95008 1.19070 0.95990 0.93964 0.96455 1.23597 1.02677 1.00650 0.78648 1.21366 0.91633 0.93422 0.86601 0.91355 1.42445 1.86054 1.06571 0.99960 1.19254 1.42807 0.92689 0.83208 0.91034 1.24745 1.02266 0.95428 0.97929 1.69651 1.55936 1.02767 1.29299 0.86204 0.77493 0.78074 0.84467 1.21642 1.21733 1.20657 0.93221 0.91380 0.92878 0.92649 0.90929 0.93284 0.91775 0.92034 0.90511 0.90886 0.91144 0.90823 0.90697 0.90564 0.86284 0.86273 0.86230 0.86666 0.91256 0.91228 0.77339 0.93325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 8.48 37.16 0.32 -1.52 16 2 C -0.09 -1.35 0.85 -152.67 -0.13 -1.48 16 3 C -0.13 -2.07 7.55 37.16 0.28 -1.79 16 4 C 0.12 1.82 6.04 -3.06 -0.02 1.80 16 5 N -0.61 -9.58 3.32 -170.38 -0.57 -10.15 16 6 C 0.53 8.55 5.70 -10.99 -0.06 8.49 16 7 O -0.54 -10.30 16.15 5.56 0.09 -10.21 16 8 C -0.06 -0.87 2.03 -93.10 -0.19 -1.06 16 9 H 0.10 1.36 7.09 -51.93 -0.37 0.99 16 10 C -0.11 -1.28 5.24 -26.70 -0.14 -1.42 16 11 C -0.12 -1.14 5.98 -26.70 -0.16 -1.30 16 12 C -0.08 -0.77 5.68 -28.05 -0.16 -0.93 16 13 C -0.07 -0.85 5.74 -104.62 -0.60 -1.45 16 14 C -0.13 -1.36 9.61 -39.44 -0.38 -1.74 16 15 C -0.12 -1.30 10.05 -39.69 -0.40 -1.70 16 16 C -0.12 -1.50 10.05 -39.68 -0.40 -1.90 16 17 C -0.10 -1.35 8.52 -39.44 -0.34 -1.68 16 18 C -0.05 -0.75 5.11 -104.62 -0.53 -1.28 16 19 C 0.07 1.15 5.54 -2.41 -0.01 1.14 16 20 C 0.18 3.30 2.97 -65.66 -0.20 3.11 16 21 H 0.07 1.28 7.99 -51.93 -0.41 0.87 16 22 N -0.71 -15.96 5.15 -51.23 -0.26 -16.22 16 23 C -0.25 -6.34 9.96 -15.06 -0.15 -6.49 16 24 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 25 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 26 N -0.93 -26.33 13.06 55.49 0.72 -25.60 16 27 Si 0.91 21.19 29.55 -169.99 -5.02 16.17 16 28 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 29 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 30 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.05 0.73 8.13 -51.93 -0.42 0.30 16 34 H 0.05 0.88 7.44 -51.93 -0.39 0.50 16 35 H 0.07 1.26 6.76 -51.93 -0.35 0.91 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.97 7.82 -51.93 -0.41 0.56 16 38 H 0.06 0.91 7.85 -51.93 -0.41 0.51 16 39 H 0.08 0.89 7.80 -51.93 -0.41 0.49 16 40 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 41 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 44 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.12 0.99 8.05 -52.48 -0.42 0.57 16 46 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 47 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 48 H 0.12 1.68 7.23 -52.49 -0.38 1.30 16 49 H 0.07 1.20 7.71 -51.93 -0.40 0.80 16 50 H 0.07 1.11 7.32 -51.93 -0.38 0.73 16 51 H 0.39 9.29 5.46 -40.82 -0.22 9.07 16 52 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 403.05 15.07 6.07 6.07 Total: -1.00 -29.75 403.05 -11.06 -40.82 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -8.73 Total: 10.61 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -3.36 Total: -11.48 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: -0.11 Total: -51.98 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -29.75 -11.06 -40.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995960404.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.908 kcal (2) G-P(sol) polarization free energy of solvation -29.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds